Wall clock time and date at job start Tue Mar 31 2020 09:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00134 * 2 1 4 4 C 1.53004 * 109.47244 * 124.72287 * 3 2 1 5 5 H 1.09002 * 109.47002 * 305.00420 * 4 3 2 6 6 C 1.53003 * 109.46646 * 65.00311 * 4 3 2 7 7 O 1.42904 * 109.46517 * 184.99905 * 6 4 3 8 8 C 1.52999 * 109.47148 * 185.00516 * 4 3 2 9 9 N 1.46900 * 109.47221 * 175.00410 * 8 4 3 10 10 C 1.46894 * 111.00047 * 179.97438 * 9 8 4 11 11 H 1.08995 * 109.47368 * 34.99851 * 10 9 8 12 12 C 1.53002 * 109.47170 * 274.99347 * 10 9 8 13 13 C 1.50709 * 109.46808 * 154.99923 * 10 9 8 14 14 C 1.38293 * 119.93190 * 39.72671 * 13 10 9 15 15 C 1.38106 * 120.06824 * 179.72364 * 14 13 10 16 16 C 1.38877 * 119.92572 * 0.54889 * 15 14 13 17 17 O 1.35758 * 120.06478 * 179.74543 * 16 15 14 18 18 C 1.34826 * 116.99780 * 174.43748 * 17 16 15 19 19 H 1.08001 * 120.00261 * 5.06021 * 18 17 16 20 20 C 1.38648 * 119.99884 * 185.05478 * 18 17 16 21 21 N 1.31552 * 120.00326 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47450 * 90.00344 * 22 20 18 24 24 H 1.48499 * 109.47468 * 210.00112 * 22 20 18 25 25 H 1.48500 * 109.47363 * 330.00406 * 22 20 18 26 26 C 1.38872 * 119.86550 * 359.72545 * 16 15 14 27 27 C 1.38104 * 119.93190 * 0.02562 * 26 16 15 28 28 H 1.08001 * 119.99781 * 180.27099 * 1 2 3 29 29 H 1.07992 * 120.00075 * 0.27363 * 1 2 3 30 30 H 1.08002 * 120.00077 * 179.72639 * 2 1 3 31 31 H 1.08991 * 109.47491 * 244.72884 * 3 2 1 32 32 H 1.09000 * 109.46727 * 4.72773 * 3 2 1 33 33 H 1.08992 * 109.47185 * 305.00013 * 6 4 3 34 34 H 1.08998 * 109.46992 * 65.00254 * 6 4 3 35 35 H 0.96702 * 113.99078 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.46979 * 295.00026 * 8 4 3 37 37 H 1.08998 * 109.47245 * 55.00226 * 8 4 3 38 38 H 1.00903 * 110.99613 * 303.95574 * 9 8 4 39 39 H 1.09000 * 109.46373 * 60.00569 * 12 10 9 40 40 H 1.08997 * 109.47095 * 179.97438 * 12 10 9 41 41 H 1.08995 * 109.47386 * 300.00492 * 12 10 9 42 42 H 1.08002 * 119.96980 * 0.02562 * 14 13 10 43 43 H 1.08003 * 120.03363 * 180.27046 * 15 14 13 44 44 H 0.97005 * 120.00754 * 179.97438 * 21 20 18 45 45 H 1.08003 * 120.03447 * 179.97438 * 26 16 15 46 46 H 1.07995 * 119.96410 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3359 1.1856 5 1 2.4795 1.1519 2.1082 6 6 4.0958 0.2533 1.0030 7 8 4.9284 0.2041 2.1634 8 6 3.7039 2.7076 1.2588 9 7 4.5405 2.7786 2.4642 10 6 5.2051 4.0845 2.5676 11 1 4.5439 4.8603 2.1818 12 6 6.4988 4.0644 1.7508 13 6 5.5273 4.3713 4.0116 14 6 5.9832 3.3554 4.8318 15 6 6.2846 3.6163 6.1541 16 6 6.1186 4.8979 6.6627 17 8 6.4092 5.1563 7.9634 18 6 6.3364 6.4420 8.3630 19 1 5.9786 7.1998 7.6818 20 6 6.7210 6.7911 9.6485 21 7 7.1573 5.8682 10.4782 22 14 6.6196 8.5722 10.2024 23 1 5.2843 8.8299 10.7989 24 1 7.6732 8.8366 11.2149 25 1 6.8205 9.4663 9.0339 26 6 5.6552 5.9146 5.8380 27 6 5.3604 5.6485 4.5153 28 1 -0.5400 -0.9353 0.0044 29 1 -0.5400 0.9352 -0.0045 30 1 1.8500 -0.9353 0.0045 31 1 2.6251 1.4004 -0.9292 32 1 1.3582 2.1318 0.0847 33 1 3.6116 -0.7129 0.8620 34 1 4.7040 0.4859 0.1290 35 1 5.6284 -0.4614 2.1171 36 1 4.3258 2.8545 0.3758 37 1 2.9412 3.4853 1.2995 38 1 3.9987 2.5816 3.2924 39 1 6.2657 3.8570 0.7064 40 1 6.9917 5.0335 1.8271 41 1 7.1600 3.2886 2.1366 42 1 6.1083 2.3581 4.4367 43 1 6.6448 2.8235 6.7930 44 1 7.4267 6.1124 11.3775 45 1 5.5247 6.9121 6.2308 46 1 5.0003 6.4388 3.8733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776170106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:39 Heat of formation + Delta-G solvation = -39.873214 kcal Electronic energy + Delta-G solvation = -24425.744715 eV Core-core repulsion = 20895.322103 eV Total energy + Delta-G solvation = -3530.422612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.19735 -38.38392 -37.08869 -35.55110 -35.06866 -32.53344 -32.03704 -30.16169 -29.59698 -27.84572 -25.91643 -25.39524 -24.93687 -22.20749 -21.78779 -20.65443 -19.99399 -19.59051 -17.86769 -17.33302 -16.92148 -15.99025 -15.72404 -15.23908 -15.02020 -14.51816 -14.37267 -13.98383 -13.91390 -13.63065 -13.41889 -13.32713 -12.76149 -12.69053 -12.57110 -12.49417 -12.23737 -12.01144 -11.68179 -11.65346 -11.57498 -11.33029 -11.16131 -10.88378 -10.73615 -10.59503 -10.54706 -10.37731 -10.18865 -9.80577 -9.63568 -9.27888 -8.78653 -8.09484 -8.04632 -7.10617 -6.41109 -3.99860 1.95849 2.30321 2.39062 3.14641 3.15568 3.20342 3.99795 4.15020 4.25491 4.57036 4.63131 4.72688 4.91354 5.06843 5.11966 5.15607 5.22281 5.29572 5.38942 5.41094 5.49353 5.54652 5.60084 5.62160 5.63059 5.77019 5.81987 5.83009 5.98356 6.04023 6.11924 6.13201 6.30216 6.31945 6.44631 6.48749 6.57531 6.82811 6.96116 7.11580 7.21290 7.35064 7.50023 7.56876 7.73898 7.77990 7.91574 8.04285 9.04685 9.76276 10.77106 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.002436 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.303613 B =11492.898090 C =11524.042612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.087 4.087 4 C -0.083 4.083 5 H 0.078 0.922 6 C 0.093 3.907 7 O -0.541 6.541 8 C 0.068 3.932 9 N -0.660 5.660 10 C 0.142 3.858 11 H 0.034 0.966 12 C -0.128 4.128 13 C -0.189 4.189 14 C -0.052 4.052 15 C -0.196 4.196 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.236 4.236 27 C -0.068 4.068 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.367 0.633 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.344 0.656 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.269 0.731 45 H 0.125 0.875 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -9.036 -21.178 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.125 4.125 4 C -0.102 4.102 5 H 0.096 0.904 6 C 0.015 3.985 7 O -0.344 6.344 8 C -0.062 4.062 9 N -0.292 5.292 10 C 0.032 3.968 11 H 0.052 0.948 12 C -0.186 4.186 13 C -0.191 4.191 14 C -0.070 4.070 15 C -0.215 4.215 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.255 4.255 27 C -0.086 4.086 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.212 0.788 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.164 0.836 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.142 0.858 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.737 -8.995 -20.841 23.982 hybrid contribution -0.514 1.082 0.295 1.234 sum -8.251 -7.913 -20.546 23.512 Atomic orbital electron populations 1.23865 0.95992 1.01852 1.01493 1.22981 0.96014 0.98517 0.99591 1.20723 0.97826 0.95656 0.98316 1.21148 0.95086 0.95214 0.98761 0.90388 1.21995 0.91709 0.96520 0.88324 1.86747 1.46789 1.61401 1.39454 1.21954 0.94625 0.94568 0.95022 1.60476 1.34339 1.29878 1.04496 1.20143 0.94932 0.89164 0.92529 0.94795 1.21732 0.97251 1.01403 0.98227 1.19291 1.10828 0.94278 0.94669 1.20559 0.96040 0.98389 0.92042 1.20274 1.10034 0.95237 0.95976 1.19431 0.92065 0.93353 0.85070 1.83982 1.75794 1.29237 1.19295 1.21307 1.45118 0.82011 0.98279 0.89173 1.25275 0.96251 0.99965 0.95087 1.70038 1.40239 1.33098 1.06519 0.85725 0.78328 0.80578 0.78863 1.19935 1.20278 1.19256 1.21100 1.09697 1.00253 0.94465 1.20587 0.98138 0.95360 0.94560 0.88582 0.88601 0.87345 0.90783 0.90962 0.94834 0.94499 0.78820 0.91527 0.95929 0.83635 0.93899 0.93068 0.91978 0.85844 0.86670 0.92084 0.85756 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 14.32 29.01 0.42 -0.94 16 2 C -0.15 -1.10 9.03 -36.03 -0.33 -1.42 16 3 C -0.09 -0.64 5.13 -27.88 -0.14 -0.78 16 4 C -0.08 -0.75 2.32 -90.62 -0.21 -0.96 16 5 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 6 C 0.09 0.80 6.32 37.16 0.23 1.04 16 7 O -0.54 -5.67 11.98 -35.23 -0.42 -6.09 16 8 C 0.07 0.71 4.87 -3.82 -0.02 0.69 16 9 N -0.66 -8.45 4.00 -107.95 -0.43 -8.88 16 10 C 0.14 2.00 2.82 -68.86 -0.19 1.81 16 11 H 0.03 0.48 7.66 -51.93 -0.40 0.08 16 12 C -0.13 -1.69 9.39 37.16 0.35 -1.35 16 13 C -0.19 -3.29 4.72 -104.57 -0.49 -3.79 16 14 C -0.05 -0.96 8.99 -39.61 -0.36 -1.31 16 15 C -0.20 -4.26 9.99 -39.39 -0.39 -4.66 16 16 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 17 O -0.18 -5.23 9.76 0.04 0.00 -5.23 16 18 C -0.39 -11.11 9.49 30.88 0.29 -10.82 16 19 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 22 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 C -0.24 -5.25 9.17 -39.40 -0.36 -5.61 16 27 C -0.07 -1.27 9.66 -39.61 -0.38 -1.66 16 28 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 29 H 0.10 0.63 7.84 -52.49 -0.41 0.22 16 30 H 0.11 0.71 6.86 -52.49 -0.36 0.35 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 33 H 0.03 0.25 6.54 -51.93 -0.34 -0.09 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.37 2.55 9.12 45.56 0.42 2.96 16 36 H 0.07 0.68 7.43 -51.93 -0.39 0.30 16 37 H 0.02 0.24 8.06 -51.93 -0.42 -0.18 16 38 H 0.34 4.86 7.98 -39.29 -0.31 4.55 16 39 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.12 2.08 7.70 -52.49 -0.40 1.68 16 43 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.12 2.78 5.64 -52.48 -0.30 2.48 16 46 H 0.10 1.67 8.03 -52.49 -0.42 1.25 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -31.26 377.09 -7.87 -39.13 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.49 Total: 9.74 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -1.94 Total: -25.23 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.33 Total: -33.82 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.42 Total: -11.32 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.26 -7.87 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776170106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.740 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds