Wall clock time and date at job start Tue Mar 31 2020 09:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00134 * 2 1 4 4 C 1.53004 * 109.47244 * 124.72287 * 3 2 1 5 5 H 1.09002 * 109.47002 * 305.00420 * 4 3 2 6 6 C 1.53003 * 109.46646 * 65.00311 * 4 3 2 7 7 O 1.42904 * 109.46517 * 184.99905 * 6 4 3 8 8 C 1.52999 * 109.47148 * 185.00516 * 4 3 2 9 9 N 1.46900 * 109.47221 * 175.00410 * 8 4 3 10 10 C 1.46894 * 111.00047 * 179.97438 * 9 8 4 11 11 H 1.08995 * 109.47368 * 34.99851 * 10 9 8 12 12 C 1.53002 * 109.47170 * 274.99347 * 10 9 8 13 13 C 1.50709 * 109.46808 * 154.99923 * 10 9 8 14 14 C 1.38293 * 119.93190 * 39.72671 * 13 10 9 15 15 C 1.38106 * 120.06824 * 179.72364 * 14 13 10 16 16 C 1.38877 * 119.92572 * 0.54889 * 15 14 13 17 17 O 1.35758 * 120.06478 * 179.74543 * 16 15 14 18 18 C 1.34826 * 116.99780 * 174.43748 * 17 16 15 19 19 H 1.08001 * 120.00261 * 5.06021 * 18 17 16 20 20 C 1.38648 * 119.99884 * 185.05478 * 18 17 16 21 21 N 1.31552 * 120.00326 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47450 * 90.00344 * 22 20 18 24 24 H 1.48499 * 109.47468 * 210.00112 * 22 20 18 25 25 H 1.48500 * 109.47363 * 330.00406 * 22 20 18 26 26 C 1.38872 * 119.86550 * 359.72545 * 16 15 14 27 27 C 1.38104 * 119.93190 * 0.02562 * 26 16 15 28 28 H 1.08001 * 119.99781 * 180.27099 * 1 2 3 29 29 H 1.07992 * 120.00075 * 0.27363 * 1 2 3 30 30 H 1.08002 * 120.00077 * 179.72639 * 2 1 3 31 31 H 1.08991 * 109.47491 * 244.72884 * 3 2 1 32 32 H 1.09000 * 109.46727 * 4.72773 * 3 2 1 33 33 H 1.08992 * 109.47185 * 305.00013 * 6 4 3 34 34 H 1.08998 * 109.46992 * 65.00254 * 6 4 3 35 35 H 0.96702 * 113.99078 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.46979 * 295.00026 * 8 4 3 37 37 H 1.08998 * 109.47245 * 55.00226 * 8 4 3 38 38 H 1.00903 * 110.99613 * 303.95574 * 9 8 4 39 39 H 1.09000 * 109.46373 * 60.00569 * 12 10 9 40 40 H 1.08997 * 109.47095 * 179.97438 * 12 10 9 41 41 H 1.08995 * 109.47386 * 300.00492 * 12 10 9 42 42 H 1.08002 * 119.96980 * 0.02562 * 14 13 10 43 43 H 1.08003 * 120.03363 * 180.27046 * 15 14 13 44 44 H 0.97005 * 120.00754 * 179.97438 * 21 20 18 45 45 H 1.08003 * 120.03447 * 179.97438 * 26 16 15 46 46 H 1.07995 * 119.96410 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3359 1.1856 5 1 2.4795 1.1519 2.1082 6 6 4.0958 0.2533 1.0030 7 8 4.9284 0.2041 2.1634 8 6 3.7039 2.7076 1.2588 9 7 4.5405 2.7786 2.4642 10 6 5.2051 4.0845 2.5676 11 1 4.5439 4.8603 2.1818 12 6 6.4988 4.0644 1.7508 13 6 5.5273 4.3713 4.0116 14 6 5.9832 3.3554 4.8318 15 6 6.2846 3.6163 6.1541 16 6 6.1186 4.8979 6.6627 17 8 6.4092 5.1563 7.9634 18 6 6.3364 6.4420 8.3630 19 1 5.9786 7.1998 7.6818 20 6 6.7210 6.7911 9.6485 21 7 7.1573 5.8682 10.4782 22 14 6.6196 8.5722 10.2024 23 1 5.2843 8.8299 10.7989 24 1 7.6732 8.8366 11.2149 25 1 6.8205 9.4663 9.0339 26 6 5.6552 5.9146 5.8380 27 6 5.3604 5.6485 4.5153 28 1 -0.5400 -0.9353 0.0044 29 1 -0.5400 0.9352 -0.0045 30 1 1.8500 -0.9353 0.0045 31 1 2.6251 1.4004 -0.9292 32 1 1.3582 2.1318 0.0847 33 1 3.6116 -0.7129 0.8620 34 1 4.7040 0.4859 0.1290 35 1 5.6284 -0.4614 2.1171 36 1 4.3258 2.8545 0.3758 37 1 2.9412 3.4853 1.2995 38 1 3.9987 2.5816 3.2924 39 1 6.2657 3.8570 0.7064 40 1 6.9917 5.0335 1.8271 41 1 7.1600 3.2886 2.1366 42 1 6.1083 2.3581 4.4367 43 1 6.6448 2.8235 6.7930 44 1 7.4267 6.1124 11.3775 45 1 5.5247 6.9121 6.2308 46 1 5.0003 6.4388 3.8733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776170106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:38 Heat of formation + Delta-G solvation = -60.196954 kcal Electronic energy + Delta-G solvation = -24426.626019 eV Core-core repulsion = 20895.322103 eV Total energy + Delta-G solvation = -3531.303915 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86323 -39.41056 -38.49079 -36.50178 -36.03215 -34.28868 -33.18463 -31.80194 -30.69119 -29.28746 -27.35632 -26.52777 -25.88799 -23.78774 -23.28230 -21.44607 -21.25665 -20.34055 -19.72920 -18.80611 -18.02632 -16.97980 -16.80265 -16.40040 -16.22718 -15.89267 -15.53164 -15.49521 -15.45199 -14.97656 -14.69535 -14.41050 -14.02254 -13.94747 -13.78308 -13.50382 -13.43362 -13.38073 -12.98302 -12.86887 -12.59197 -12.43475 -12.36537 -12.22715 -12.16200 -12.10644 -11.59713 -11.51782 -11.31358 -11.15998 -10.78050 -10.49634 -10.18272 -9.74853 -9.05848 -8.88678 -8.46468 -6.14651 0.62543 0.71480 1.34547 1.42896 1.44137 1.52323 2.18023 2.82959 3.15985 3.30964 3.54223 3.60544 3.84151 3.96546 4.07322 4.14740 4.25709 4.34827 4.37731 4.44107 4.52613 4.63182 4.65852 4.68449 4.77688 4.78559 4.81644 4.88361 4.97446 4.99917 5.03815 5.06697 5.16044 5.18043 5.20635 5.32404 5.39349 5.49384 5.61281 5.72764 5.77148 5.80167 5.91802 6.03921 6.24710 6.39062 6.61616 6.98123 7.21385 7.79994 8.76920 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.002436 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.303613 B =11492.898090 C =11524.042612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.082 4.082 4 C -0.078 4.078 5 H 0.059 0.941 6 C 0.092 3.908 7 O -0.566 6.566 8 C 0.069 3.931 9 N -0.661 5.661 10 C 0.145 3.855 11 H 0.047 0.953 12 C -0.124 4.124 13 C -0.162 4.162 14 C -0.041 4.041 15 C -0.206 4.206 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.243 4.243 27 C -0.066 4.066 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.380 0.620 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.336 0.664 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.145 0.855 43 H 0.110 0.890 44 H 0.272 0.728 45 H 0.118 0.882 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 -8.530 -24.497 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.179 4.179 3 C -0.119 4.119 4 C -0.097 4.097 5 H 0.078 0.922 6 C 0.014 3.986 7 O -0.371 6.371 8 C -0.060 4.060 9 N -0.292 5.292 10 C 0.035 3.965 11 H 0.065 0.935 12 C -0.182 4.182 13 C -0.163 4.163 14 C -0.059 4.059 15 C -0.226 4.226 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.262 4.262 27 C -0.084 4.084 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.227 0.773 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.154 0.846 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.163 0.837 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.715 -8.517 -24.231 27.122 hybrid contribution -0.295 0.729 0.993 1.266 sum -9.010 -7.788 -23.238 26.112 Atomic orbital electron populations 1.24016 0.96143 1.02390 1.01126 1.23066 0.96184 0.98730 0.99906 1.20672 0.97518 0.95773 0.97962 1.21094 0.95269 0.94629 0.98712 0.92204 1.22057 0.91559 0.96933 0.88010 1.86691 1.47615 1.62285 1.40487 1.22022 0.94536 0.95467 0.94017 1.60509 1.34958 1.28689 1.05045 1.20176 0.96045 0.90397 0.89852 0.93541 1.21686 0.96192 1.01109 0.99214 1.19781 1.06902 0.93216 0.96421 1.20770 0.94832 0.99769 0.90550 1.20490 1.10373 0.94274 0.97438 1.19941 0.93948 0.95173 0.84621 1.83946 1.78639 1.29751 1.21695 1.21809 1.45578 0.82443 0.99089 0.88204 1.26603 0.95538 1.05268 0.94780 1.70187 1.42710 1.35901 1.07183 0.84579 0.78781 0.74085 0.78702 1.18785 1.19548 1.17697 1.21202 1.09832 0.99420 0.95773 1.20940 0.97151 0.96963 0.93390 0.87865 0.88412 0.86807 0.89639 0.90912 0.93759 0.93704 0.77282 0.90632 0.95700 0.84552 0.91772 0.93066 0.92961 0.83703 0.87234 0.91860 0.86457 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.16 -1.96 9.03 25.65 0.23 -1.73 16 3 C -0.08 -0.97 5.13 29.85 0.15 -0.82 16 4 C -0.08 -1.22 2.32 -10.79 -0.02 -1.25 16 5 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 6 C 0.09 1.36 6.32 71.98 0.45 1.81 16 7 O -0.57 -10.61 11.98 -148.98 -1.78 -12.39 16 8 C 0.07 1.22 4.87 86.30 0.42 1.64 16 9 N -0.66 -14.93 4.00 -495.46 -1.98 -16.91 16 10 C 0.14 3.56 2.82 44.17 0.12 3.69 16 11 H 0.05 1.08 7.66 -2.39 -0.02 1.07 16 12 C -0.12 -2.81 9.39 71.98 0.68 -2.14 16 13 C -0.16 -5.24 4.72 -19.83 -0.09 -5.33 16 14 C -0.04 -1.46 8.99 22.25 0.20 -1.26 16 15 C -0.21 -9.21 9.99 22.39 0.22 -8.98 16 16 C 0.11 5.83 6.65 22.57 0.15 5.98 16 17 O -0.23 -14.45 9.76 -22.79 -0.22 -14.67 16 18 C -0.41 -24.59 9.49 67.92 0.64 -23.95 16 19 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 20 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 21 N -0.92 -57.59 13.67 21.61 0.30 -57.30 16 22 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 26 C -0.24 -10.89 9.17 22.39 0.21 -10.69 16 27 C -0.07 -2.34 9.66 22.25 0.21 -2.13 16 28 H 0.10 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.10 1.11 7.84 -2.91 -0.02 1.09 16 30 H 0.11 1.24 6.86 -2.91 -0.02 1.22 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.87 7.79 -2.39 -0.02 0.85 16 33 H 0.04 0.56 6.54 -2.39 -0.02 0.54 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.38 4.53 9.12 -74.06 -0.68 3.86 16 36 H 0.08 1.24 7.43 -2.39 -0.02 1.22 16 37 H 0.02 0.44 8.06 -2.39 -0.02 0.42 16 38 H 0.34 8.68 7.98 -89.69 -0.72 7.96 16 39 H 0.06 1.21 7.45 -2.39 -0.02 1.19 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.15 4.59 7.70 -2.91 -0.02 4.57 16 43 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 44 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 45 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 46 H 0.14 3.94 8.03 -2.91 -0.02 3.92 16 Total: -1.00 -71.52 377.09 2.94 -68.59 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.41 Total: 34.61 kcal Atomic # 6 Polarization: -52.57 SS G_CDS: 5.02 Total: -47.55 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.69 Total: -74.21 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -2.01 Total: -27.06 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.52 2.94 -68.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776170106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.389 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds