Wall clock time and date at job start Tue Mar 31 2020 09:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47199 * 2 1 4 4 N 1.46900 * 109.47166 * 240.00235 * 2 1 3 5 5 C 1.46904 * 110.99755 * 157.74693 * 4 2 1 6 6 H 1.08994 * 109.47512 * 38.74569 * 5 4 2 7 7 C 1.52999 * 109.47215 * 278.74183 * 5 4 2 8 8 O 1.42903 * 109.46839 * 295.60438 * 7 5 4 9 9 C 1.53006 * 109.46717 * 158.74381 * 5 4 2 10 10 C 1.52992 * 109.47068 * 294.99699 * 9 5 4 11 11 C 1.53004 * 117.50088 * 243.62032 * 10 9 5 12 12 C 1.53000 * 60.00260 * 252.51235 * 11 10 9 13 13 C 1.50702 * 109.47200 * 120.00216 * 2 1 3 14 14 C 1.38297 * 119.93250 * 79.72737 * 13 2 1 15 15 C 1.38096 * 120.07025 * 179.72955 * 14 13 2 16 16 C 1.38884 * 119.92839 * 0.54138 * 15 14 13 17 17 O 1.35752 * 120.07161 * 179.74949 * 16 15 14 18 18 C 1.34826 * 117.00182 * 185.91887 * 17 16 15 19 19 H 1.07994 * 119.99983 * 354.86285 * 18 17 16 20 20 C 1.38650 * 119.99794 * 174.86464 * 18 17 16 21 21 N 1.31560 * 120.00169 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00078 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46903 * 90.00494 * 22 20 18 24 24 H 1.48501 * 109.46937 * 209.99924 * 22 20 18 25 25 H 1.48499 * 109.47170 * 330.00115 * 22 20 18 26 26 C 1.38884 * 119.86174 * 359.73215 * 16 15 14 27 27 C 1.38093 * 119.93066 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.46986 * 55.05124 * 1 2 3 29 29 H 1.08997 * 109.47563 * 295.05310 * 1 2 3 30 30 H 1.08999 * 109.47000 * 175.05131 * 1 2 3 31 31 H 1.00900 * 110.99868 * 281.69842 * 4 2 1 32 32 H 1.08998 * 109.46856 * 55.60288 * 7 5 4 33 33 H 1.08999 * 109.47111 * 175.60351 * 7 5 4 34 34 H 0.96705 * 113.99684 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.47128 * 55.00139 * 9 5 4 36 36 H 1.09005 * 109.46933 * 174.99949 * 9 5 4 37 37 H 1.08997 * 115.55587 * 29.33438 * 10 9 5 38 38 H 1.09001 * 117.49855 * 0.02562 * 11 10 9 39 39 H 1.08999 * 117.49715 * 145.02133 * 11 10 9 40 40 H 1.08995 * 117.49980 * 252.51054 * 12 11 10 41 41 H 1.09000 * 117.51655 * 107.47750 * 12 11 10 42 42 H 1.08005 * 119.96158 * 0.02562 * 14 13 2 43 43 H 1.07994 * 120.03754 * 180.27377 * 15 14 13 44 44 H 0.96993 * 120.00697 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03229 * 179.97438 * 26 16 15 46 46 H 1.07998 * 119.96810 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 3.3919 -0.2792 -1.5225 6 1 3.9621 -0.1607 -0.6012 7 6 3.3595 1.0514 -2.2770 8 8 2.7006 0.8713 -3.5322 9 6 4.0529 -1.3459 -2.3978 10 6 4.1982 -2.6427 -1.5992 11 6 5.6160 -3.1459 -1.3206 12 6 4.7330 -3.8713 -2.3379 13 6 2.0323 -0.7105 1.2304 14 6 2.0608 -2.0927 1.2659 15 6 2.5258 -2.7466 2.3898 16 6 2.9546 -2.0148 3.4896 17 8 3.4075 -2.6547 4.5979 18 6 3.6921 -1.8913 5.6721 19 1 3.6363 -0.8152 5.5999 20 6 4.0566 -2.4878 6.8695 21 7 4.3348 -1.7429 7.9176 22 14 4.1525 -4.3492 6.9945 23 1 5.5226 -4.7991 6.6401 24 1 3.8377 -4.7688 8.3838 25 1 3.1736 -4.9592 6.0592 26 6 2.9194 -0.6269 3.4530 27 6 2.4590 0.0212 2.3238 28 1 -0.3633 0.5887 -0.8424 29 1 -0.3634 0.4351 0.9309 30 1 -0.3633 -1.0238 -0.0886 31 1 1.9601 -1.6936 -1.0886 32 1 2.8196 1.7911 -1.6860 33 1 4.3791 1.3969 -2.4481 34 1 2.6431 1.6761 -4.0652 35 1 3.4354 -1.5281 -3.2774 36 1 5.0380 -0.9997 -2.7108 37 1 3.4450 -2.8073 -0.8286 38 1 6.4453 -2.5528 -1.7060 39 1 5.7958 -3.6414 -0.3665 40 1 4.3319 -4.8439 -2.0532 41 1 4.9809 -3.7556 -3.3930 42 1 1.7235 -2.6612 0.4118 43 1 2.5520 -3.8259 2.4152 44 1 4.5894 -2.1602 8.7554 45 1 3.2517 -0.0551 4.3068 46 1 2.4317 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776171018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:01 Heat of formation + Delta-G solvation = -50.722168 kcal Electronic energy + Delta-G solvation = -25445.890837 eV Core-core repulsion = 21914.997779 eV Total energy + Delta-G solvation = -3530.893058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14488 -39.90669 -38.54188 -37.57748 -36.25874 -34.47623 -33.31695 -31.93897 -29.88247 -28.97352 -27.63478 -27.26660 -23.96893 -23.64452 -23.23771 -22.13210 -21.36694 -20.88358 -19.72834 -19.18603 -18.24577 -17.53292 -16.81651 -16.45574 -16.25119 -15.85235 -15.73651 -15.59613 -15.26199 -14.98192 -14.60261 -14.45441 -14.37178 -14.15531 -14.11145 -13.89500 -13.49609 -13.33261 -13.03437 -12.73196 -12.60418 -12.46796 -12.33879 -12.13469 -12.10176 -12.04227 -11.81672 -11.64940 -11.31050 -11.03474 -10.92025 -10.83818 -10.58882 -9.86259 -9.35229 -8.99737 -8.52590 -6.25281 0.50243 0.59232 1.29027 1.33085 1.48846 2.25213 2.71980 2.90840 2.98296 3.14132 3.25742 3.57689 3.68545 3.89612 3.94496 4.04073 4.08283 4.09102 4.20444 4.37239 4.42418 4.48578 4.56405 4.58690 4.66634 4.69573 4.70565 4.79253 4.85700 4.91707 4.94623 5.04396 5.09062 5.12355 5.18627 5.22688 5.28138 5.34100 5.40675 5.46304 5.53659 5.65766 5.74697 5.87310 6.19062 6.22978 6.50540 6.81724 7.08829 7.55952 8.59025 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.003758 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.407344 B = 7448.093683 C = 8416.602596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.139 3.861 3 H 0.084 0.916 4 N -0.663 5.663 5 C 0.087 3.913 6 H 0.044 0.956 7 C 0.091 3.909 8 O -0.572 6.572 9 C -0.071 4.071 10 C -0.166 4.166 11 C -0.190 4.190 12 C -0.169 4.169 13 C -0.172 4.172 14 C -0.065 4.065 15 C -0.185 4.185 16 C 0.120 3.880 17 O -0.246 6.246 18 C -0.399 4.399 19 H 0.081 0.919 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.263 1.263 26 C -0.232 4.232 27 C -0.067 4.067 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.341 0.659 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.388 0.612 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.142 0.858 43 H 0.125 0.875 44 H 0.285 0.715 45 H 0.107 0.893 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 2.679 -23.462 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.028 3.972 3 H 0.102 0.898 4 N -0.296 5.296 5 C -0.023 4.023 6 H 0.062 0.938 7 C 0.012 3.988 8 O -0.378 6.378 9 C -0.109 4.109 10 C -0.184 4.184 11 C -0.227 4.227 12 C -0.206 4.206 13 C -0.175 4.175 14 C -0.083 4.083 15 C -0.205 4.205 16 C 0.071 3.929 17 O -0.153 6.153 18 C -0.476 4.476 19 H 0.098 0.902 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.188 1.188 26 C -0.251 4.251 27 C -0.086 4.086 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.160 0.840 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.990 2.289 -23.448 23.748 hybrid contribution 0.931 -0.229 1.712 1.962 sum -2.059 2.060 -21.736 21.930 Atomic orbital electron populations 1.21686 0.93059 1.02240 1.01596 1.20444 0.95916 0.96930 0.83869 0.89778 1.60877 1.21598 1.11803 1.35309 1.21563 0.89142 0.95143 0.96479 0.93802 1.22142 0.95738 0.95667 0.85227 1.86528 1.81102 1.39285 1.30908 1.21093 1.00600 0.91527 0.97657 1.22458 0.97401 0.95937 1.02630 1.23043 0.94205 1.04828 1.00636 1.22994 1.03412 0.96130 0.98025 1.20582 1.05011 0.93916 0.97955 1.20665 0.97337 0.94015 0.96320 1.20425 1.07106 0.99848 0.93075 1.19635 0.93634 0.91982 0.87671 1.83512 1.75312 1.36717 1.19799 1.20693 1.47357 0.91491 0.88019 0.90199 1.25262 0.95514 1.04791 0.93156 1.69723 1.46256 1.38058 1.02303 0.85235 0.79514 0.78083 0.78004 1.19078 1.19166 1.18774 1.21282 1.09062 0.94033 1.00772 1.20931 0.96098 0.99941 0.91627 0.91204 0.92663 0.92801 0.83713 0.93661 0.92687 0.76414 0.90395 0.91047 0.88703 0.88291 0.90134 0.88595 0.87742 0.84040 0.85713 0.90549 0.87514 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.49 71.98 0.68 -1.98 16 2 C 0.14 3.12 2.66 44.17 0.12 3.24 16 3 H 0.08 1.81 6.68 -2.38 -0.02 1.79 16 4 N -0.66 -14.11 5.95 -473.29 -2.82 -16.92 16 5 C 0.09 1.77 2.27 44.92 0.10 1.87 16 6 H 0.04 1.06 7.56 -2.39 -0.02 1.04 16 7 C 0.09 1.53 6.75 71.98 0.49 2.02 16 8 O -0.57 -9.65 12.84 -148.98 -1.91 -11.57 16 9 C -0.07 -1.37 4.84 30.59 0.15 -1.22 16 10 C -0.17 -3.44 5.37 -10.79 -0.06 -3.50 16 11 C -0.19 -4.02 10.18 30.60 0.31 -3.70 16 12 C -0.17 -3.08 10.25 30.60 0.31 -2.76 16 13 C -0.17 -4.98 4.45 -19.83 -0.09 -5.07 16 14 C -0.07 -1.96 8.24 22.25 0.18 -1.78 16 15 C -0.19 -7.03 9.99 22.39 0.22 -6.80 16 16 C 0.12 5.58 6.65 22.58 0.15 5.73 16 17 O -0.25 -13.40 8.59 -22.72 -0.20 -13.60 16 18 C -0.40 -23.62 9.95 67.92 0.68 -22.95 16 19 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 20 C 0.01 0.65 5.49 84.83 0.47 1.12 16 21 N -0.92 -55.25 13.96 21.61 0.30 -54.94 16 22 Si 0.97 45.62 28.62 68.60 1.96 47.58 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 26 C -0.23 -10.12 9.17 22.39 0.21 -9.92 16 27 C -0.07 -2.28 9.66 22.25 0.21 -2.06 16 28 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.34 7.37 4.46 -89.69 -0.40 6.97 16 32 H 0.05 0.75 7.07 -2.39 -0.02 0.73 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.39 3.18 9.12 -74.05 -0.68 2.51 16 35 H 0.08 1.60 7.74 -2.38 -0.02 1.58 16 36 H 0.07 1.28 7.88 -2.38 -0.02 1.26 16 37 H 0.09 2.16 5.12 -2.39 -0.01 2.15 16 38 H 0.10 1.90 8.03 -2.39 -0.02 1.88 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.14 3.40 5.96 -2.91 -0.02 3.38 16 43 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 44 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 46 H 0.13 3.80 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -66.74 368.79 1.40 -65.34 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.08 Total: 31.87 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 4.13 Total: -47.76 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -2.52 Total: -71.87 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -2.11 Total: -25.16 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.96 Total: 47.58 kcal Total: -66.74 1.40 -65.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776171018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.621 kcal (2) G-P(sol) polarization free energy of solvation -66.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds