Wall clock time and date at job start Tue Mar 31 2020 09:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 110.64172 * 2 1 4 4 C 1.54938 * 110.72567 * 123.14935 * 2 1 3 5 5 N 1.48535 * 103.22395 * 155.77404 * 4 2 1 6 6 C 1.46903 * 110.99954 * 200.27896 * 5 4 2 7 7 C 1.50696 * 109.47057 * 170.00412 * 6 5 4 8 8 C 1.38285 * 119.97337 * 90.00202 * 7 6 5 9 9 C 1.38247 * 120.11130 * 179.72052 * 8 7 6 10 10 C 1.38162 * 120.05352 * 0.27883 * 9 8 7 11 11 C 1.38706 * 119.94729 * 359.97438 * 10 9 8 12 12 O 1.35905 * 120.05552 * 179.97438 * 11 10 9 13 13 C 1.42892 * 117.00215 * 359.97438 * 12 11 10 14 14 C 1.52998 * 109.47235 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47223 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99938 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00173 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00000 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47463 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46891 * 120.00582 * 19 17 15 22 22 H 1.48509 * 109.46852 * 240.00073 * 19 17 15 23 23 C 1.38123 * 119.97059 * 270.27262 * 7 6 5 24 24 C 1.47898 * 105.82624 * 320.79534 * 5 4 2 25 25 C 1.53992 * 107.05445 * 25.32819 * 24 5 4 26 26 H 1.09004 * 110.39237 * 117.73783 * 25 24 5 27 27 O 1.42900 * 110.31328 * 239.85916 * 25 24 5 28 28 H 1.08996 * 109.47309 * 298.29693 * 1 2 3 29 29 H 1.08997 * 109.47576 * 58.30638 * 1 2 3 30 30 H 1.09008 * 109.46548 * 178.30218 * 1 2 3 31 31 H 1.08997 * 110.66959 * 37.34423 * 4 2 1 32 32 H 1.09000 * 110.80857 * 274.27731 * 4 2 1 33 33 H 1.08999 * 109.46671 * 49.99934 * 6 5 4 34 34 H 1.09007 * 109.47171 * 290.00368 * 6 5 4 35 35 H 1.08002 * 119.94679 * 0.02562 * 8 7 6 36 36 H 1.07998 * 119.97068 * 180.25510 * 9 8 7 37 37 H 1.08007 * 120.02848 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47658 * 300.00365 * 13 12 11 39 39 H 1.09001 * 109.47030 * 60.00039 * 13 12 11 40 40 H 1.09004 * 109.47364 * 299.99822 * 14 13 12 41 41 H 1.08996 * 109.47188 * 60.00492 * 14 13 12 42 42 H 0.96994 * 120.00261 * 180.02562 * 18 17 15 43 43 H 1.08006 * 120.03140 * 0.02562 * 23 7 6 44 44 H 1.08998 * 109.91709 * 144.68120 * 24 5 4 45 45 H 1.09006 * 109.91572 * 265.98250 * 24 5 4 46 46 H 0.96704 * 113.99870 * 295.72322 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0783 -0.7924 1.2133 5 7 3.4318 -1.2078 0.7642 6 6 3.9213 -2.3470 1.5520 7 6 5.1739 -2.8948 0.9181 8 6 6.4103 -2.4016 1.2927 9 6 7.5616 -2.9061 0.7172 10 6 7.4791 -3.9008 -0.2380 11 6 6.2398 -4.3936 -0.6193 12 8 6.1560 -5.3717 -1.5591 13 6 7.3848 -5.8458 -2.1134 14 6 7.0914 -6.9359 -3.1462 15 6 8.3874 -7.4364 -3.7302 16 1 9.3263 -7.0184 -3.3984 17 6 8.3744 -8.4278 -4.6883 18 7 7.2311 -8.9363 -5.0929 19 14 9.9808 -9.0476 -5.4128 20 1 11.1168 -8.3181 -4.7945 21 1 10.1188 -10.5007 -5.1398 22 1 9.9836 -8.8172 -6.8799 23 6 5.0857 -3.8853 -0.0405 24 6 3.2894 -1.5719 -0.6622 25 6 2.0771 -0.7948 -1.2079 26 1 2.3879 -0.1133 -1.9997 27 8 1.0856 -1.7010 -1.6955 28 1 -0.3634 0.4871 0.9048 29 1 -0.3634 0.5399 -0.8744 30 1 -0.3633 -1.0273 -0.0305 31 1 1.4561 -1.6640 1.4165 32 1 2.1442 -0.1545 2.0946 33 1 3.1579 -3.1245 1.5794 34 1 4.1418 -2.0184 2.5677 35 1 6.4770 -1.6243 2.0396 36 1 8.5263 -2.5221 1.0144 37 1 8.3788 -4.2944 -0.6877 38 1 7.9084 -5.0204 -2.5956 39 1 8.0075 -6.2561 -1.3184 40 1 6.5677 -7.7615 -2.6643 41 1 6.4689 -6.5252 -3.9411 42 1 7.2219 -9.6340 -5.7666 43 1 4.1196 -4.2669 -0.3362 44 1 4.1887 -1.2889 -1.2092 45 1 3.1162 -2.6440 -0.7562 46 1 1.3729 -2.2274 -2.4541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897683253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:48 Heat of formation + Delta-G solvation = -69.543663 kcal Electronic energy + Delta-G solvation = -24617.713577 eV Core-core repulsion = 21086.004358 eV Total energy + Delta-G solvation = -3531.709219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.25837 -39.40788 -37.41190 -35.88580 -33.53820 -33.33688 -31.04225 -30.75510 -29.39584 -28.78638 -26.63698 -25.13178 -24.58760 -22.34195 -22.13633 -21.17053 -20.47734 -19.90354 -17.85898 -17.43158 -16.26195 -16.23073 -15.74716 -15.69782 -15.33288 -15.04183 -14.86289 -14.53730 -14.47137 -13.92502 -13.58333 -13.18245 -13.06362 -12.76751 -12.66917 -12.48536 -12.34618 -12.14116 -11.86829 -11.58226 -11.32640 -11.31239 -11.25581 -11.10048 -10.90192 -10.73919 -10.67306 -10.45236 -10.21572 -9.89046 -9.68790 -9.31569 -8.84927 -8.55668 -8.47889 -7.86460 -6.13295 -4.17975 1.39764 1.66721 3.24465 3.31627 3.35168 3.62333 3.79189 3.96617 4.09011 4.31495 4.37590 4.44068 4.67591 4.81778 4.93467 5.01561 5.14032 5.22257 5.23310 5.27983 5.28945 5.39429 5.44292 5.47250 5.51697 5.52328 5.64696 5.74651 5.79824 5.84217 5.86108 6.00093 6.03324 6.14647 6.15258 6.49397 6.53113 6.62699 6.65573 6.70267 6.78017 6.96043 7.42137 7.47473 7.60418 7.78445 8.02761 8.20792 8.87829 9.46616 10.98354 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.002669 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.166537 B =10488.674569 C =11606.353108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 H 0.090 0.910 4 C 0.037 3.963 5 N -0.507 5.507 6 C 0.088 3.912 7 C -0.051 4.051 8 C -0.150 4.150 9 C -0.081 4.081 10 C -0.210 4.210 11 C 0.145 3.855 12 O -0.317 6.317 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.157 4.157 24 C 0.003 3.997 25 C 0.094 3.906 26 H 0.065 0.935 27 O -0.562 6.562 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 18.210 12.874 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 H 0.108 0.892 4 C -0.090 4.090 5 N -0.231 5.231 6 C -0.039 4.039 7 C -0.051 4.051 8 C -0.169 4.169 9 C -0.099 4.099 10 C -0.229 4.229 11 C 0.098 3.902 12 O -0.230 6.230 13 C -0.008 4.008 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.176 4.176 24 C -0.125 4.125 25 C 0.034 3.966 26 H 0.083 0.917 27 O -0.368 6.368 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.743 18.639 13.222 24.843 hybrid contribution 1.055 -1.367 -1.031 2.011 sum -8.689 17.272 12.191 22.857 Atomic orbital electron populations 1.21502 0.93676 1.02764 1.01069 1.22131 0.96684 0.98847 0.92991 0.89167 1.23358 0.88848 0.98880 0.97925 1.64930 1.22993 1.32985 1.02211 1.21203 0.93782 0.91636 0.97302 1.19370 0.94530 0.95271 0.95971 1.20764 0.91628 1.01758 1.02700 1.20901 0.98283 0.95408 0.95290 1.21399 0.97274 1.01707 1.02553 1.19134 0.93463 0.88529 0.89075 1.86166 1.36151 1.49514 1.51158 1.23327 0.83029 0.97894 0.96594 1.19127 0.98046 0.91745 0.92266 1.21006 0.92154 1.20716 1.22553 0.92313 1.24993 0.96600 0.96228 0.96386 1.69981 1.24987 1.27246 1.30547 0.86432 0.83305 0.78707 0.78956 1.19632 1.20814 1.20806 1.20294 0.96979 1.00315 1.00016 1.23741 0.98879 0.99756 0.90171 1.22653 0.87339 0.90650 0.95957 0.91659 1.86503 1.41318 1.56468 1.52509 0.93006 0.92567 0.91583 0.93208 0.89876 0.93565 0.89546 0.86274 0.86124 0.85256 0.93149 0.93136 0.95419 0.95432 0.92734 0.85884 0.89759 0.91846 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.69 37.15 0.32 -0.75 16 2 C -0.09 -0.75 3.64 -88.76 -0.32 -1.08 16 3 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.04 0.33 6.00 -1.90 -0.01 0.32 16 5 N -0.51 -5.32 5.39 -231.89 -1.25 -6.57 16 6 C 0.09 0.94 5.19 -4.98 -0.03 0.91 16 7 C -0.05 -0.65 4.74 -104.65 -0.50 -1.15 16 8 C -0.15 -1.85 9.70 -39.56 -0.38 -2.23 16 9 C -0.08 -1.05 10.04 -39.61 -0.40 -1.45 16 10 C -0.21 -3.27 9.04 -39.44 -0.36 -3.63 16 11 C 0.14 2.50 6.69 -39.22 -0.26 2.24 16 12 O -0.32 -6.47 10.14 -19.44 -0.20 -6.67 16 13 C 0.07 1.40 4.68 37.16 0.17 1.57 16 14 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 15 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.16 -2.34 8.25 -39.43 -0.33 -2.67 16 24 C 0.00 0.03 5.17 -2.76 -0.01 0.02 16 25 C 0.09 0.88 4.23 -25.37 -0.11 0.77 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 O -0.56 -5.47 11.56 -35.23 -0.41 -5.87 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.63 7.29 -51.92 -0.38 0.25 16 31 H 0.05 0.47 7.76 -51.93 -0.40 0.07 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.49 7.84 -51.93 -0.41 0.09 16 34 H 0.09 0.80 8.09 -51.92 -0.42 0.38 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.99 6.30 -52.48 -0.33 1.66 16 38 H 0.05 1.02 7.66 -51.93 -0.40 0.63 16 39 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.12 1.78 7.03 -52.48 -0.37 1.41 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.75 5.62 -51.93 -0.29 0.45 16 46 H 0.38 2.62 9.12 45.56 0.42 3.04 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -30.81 368.86 -10.10 -40.90 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.75 Total: 2.05 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.77 Total: -19.93 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: -0.51 Total: -32.20 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.60 Total: -12.54 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.81 -10.10 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897683253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.642 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds