Wall clock time and date at job start Tue Mar 31 2020 10:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 117.00059 * 2 1 4 4 C 1.38367 * 120.16302 * 359.97438 * 3 2 1 5 5 C 1.38693 * 120.38908 * 180.02562 * 4 3 2 6 6 C 1.37906 * 119.96003 * 359.87508 * 5 4 3 7 7 C 1.38735 * 119.85487 * 359.92587 * 6 5 4 8 8 C 1.38355 * 120.41134 * 0.40747 * 7 6 5 9 9 O 1.35994 * 120.14337 * 179.73151 * 8 7 6 10 10 C 1.42893 * 117.00037 * 359.72720 * 9 8 7 11 11 C 1.50656 * 121.82307 * 180.20676 * 6 5 4 12 12 N 1.46620 * 110.50386 * 342.53867 * 11 6 5 13 13 C 1.46900 * 110.99971 * 289.14843 * 12 11 6 14 14 C 1.53004 * 109.46744 * 293.95119 * 13 12 11 15 15 C 1.53002 * 109.47070 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47228 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00145 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99661 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00040 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47124 * 89.99905 * 20 18 16 22 22 H 1.48503 * 109.46881 * 209.99497 * 20 18 16 23 23 H 1.48492 * 109.47171 * 329.99887 * 20 18 16 24 24 C 1.47166 * 110.23347 * 52.55394 * 12 11 6 25 25 C 1.50735 * 118.39557 * 179.78097 * 5 4 3 26 26 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47014 * 300.00213 * 1 2 3 28 28 H 1.08997 * 109.46949 * 60.00188 * 1 2 3 29 29 H 1.07998 * 119.80986 * 0.03087 * 4 3 2 30 30 H 1.07995 * 119.79488 * 180.13796 * 7 6 5 31 31 H 1.09004 * 109.46996 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47409 * 299.99546 * 10 9 8 33 33 H 1.09004 * 109.47200 * 60.00225 * 10 9 8 34 34 H 1.09000 * 109.26476 * 102.80257 * 11 6 5 35 35 H 1.09001 * 109.26698 * 222.30540 * 11 6 5 36 36 H 1.08992 * 109.47296 * 53.95073 * 13 12 11 37 37 H 1.09001 * 109.47228 * 173.95414 * 13 12 11 38 38 H 1.09002 * 109.47311 * 299.99992 * 14 13 12 39 39 H 1.09001 * 109.47017 * 60.00166 * 14 13 12 40 40 H 1.09002 * 109.46884 * 300.00054 * 15 14 13 41 41 H 1.09001 * 109.47228 * 60.00095 * 15 14 13 42 42 H 0.97000 * 119.99280 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.63227 * 48.37406 * 24 12 11 44 44 H 1.09001 * 109.63430 * 168.97302 * 24 12 11 45 45 H 1.09006 * 109.38774 * 43.14177 * 25 5 4 46 46 H 1.08995 * 109.30366 * 283.39716 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2961 2.3743 -0.0005 5 6 1.9209 3.6125 -0.0011 6 6 3.2978 3.6892 0.0015 7 6 4.0542 2.5262 0.0062 8 6 3.4359 1.2885 -0.0001 9 8 4.1827 0.1520 -0.0010 10 6 5.6030 0.3090 -0.0011 11 6 4.0199 5.0114 0.0057 12 7 3.1169 6.0909 -0.4056 13 6 2.8024 5.9972 -1.8375 14 6 4.0700 6.2513 -2.6558 15 6 3.7423 6.1544 -4.1472 16 6 4.9909 6.4040 -4.9531 17 1 5.9248 6.6115 -4.4518 18 6 4.9409 6.3685 -6.3305 19 7 3.8036 6.1163 -6.9410 20 14 6.4888 6.6773 -7.3296 21 1 7.1882 5.3894 -7.5695 22 1 6.1235 7.2921 -8.6310 23 1 7.3852 7.5956 -6.5824 24 6 1.8900 6.0655 0.4066 25 6 1.0600 4.8499 -0.0067 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2176 2.3173 -0.0004 30 1 5.1324 2.5873 0.0105 31 1 6.0771 -0.6725 -0.0014 32 1 5.9076 0.8602 -0.8908 33 1 5.9078 0.8591 0.8892 34 1 4.3906 5.2156 1.0102 35 1 4.8614 4.9639 -0.6855 36 1 2.4192 5.0017 -2.0609 37 1 2.0492 6.7424 -2.0936 38 1 4.4532 7.2470 -2.4324 39 1 4.8232 5.5062 -2.3997 40 1 3.3588 5.1589 -4.3709 41 1 2.9892 6.8998 -4.4029 42 1 3.7684 6.0918 -7.9100 43 1 2.1511 5.9890 1.4621 44 1 1.3170 6.9764 0.2332 45 1 0.2350 4.7199 0.6939 46 1 0.6620 5.0073 -1.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042312821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:25 Heat of formation + Delta-G solvation = -53.928893 kcal Electronic energy + Delta-G solvation = -25504.029082 eV Core-core repulsion = 21972.996970 eV Total energy + Delta-G solvation = -3531.032112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94212 -39.19099 -38.49433 -36.02807 -33.82078 -32.53516 -31.53418 -30.30406 -28.78048 -27.68545 -27.32164 -26.65364 -24.22420 -23.27851 -22.16815 -22.03094 -20.35881 -19.11366 -18.28319 -16.98877 -16.80377 -16.16033 -16.13937 -15.34343 -15.27116 -14.97566 -14.94526 -14.60523 -14.43741 -14.39804 -14.02279 -13.45225 -13.11778 -12.56132 -12.46533 -12.29343 -12.25894 -12.19592 -11.77068 -11.62997 -11.38544 -11.34294 -11.22982 -11.12509 -10.86830 -10.75185 -10.50193 -10.46763 -10.31703 -9.56449 -9.29449 -9.02062 -8.62027 -8.30757 -8.09375 -7.69406 -5.96238 -3.98053 1.24511 1.39408 3.18621 3.22928 3.34048 3.40135 3.43781 3.62534 4.19627 4.49870 4.60091 4.71541 4.85618 4.93102 5.01961 5.04194 5.05206 5.12428 5.16759 5.28123 5.32978 5.39592 5.41826 5.44442 5.45610 5.60215 5.63375 5.72568 5.85180 5.88486 6.02507 6.05415 6.15127 6.19282 6.38615 6.54247 6.68263 6.76866 6.81438 6.97867 7.15642 7.34294 7.40692 7.52849 7.72594 7.88329 8.04596 8.47960 9.09164 9.65679 11.15280 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003737 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.772196 B = 7491.440274 C = 8243.440623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.096 3.904 4 C -0.171 4.171 5 C -0.072 4.072 6 C -0.099 4.099 7 C -0.165 4.165 8 C 0.098 3.902 9 O -0.309 6.309 10 C 0.026 3.974 11 C 0.089 3.911 12 N -0.526 5.526 13 C 0.050 3.950 14 C -0.104 4.104 15 C 0.023 3.977 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.053 3.947 25 C -0.115 4.115 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.012 0.988 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -9.296 18.814 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.050 3.950 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.101 4.101 7 C -0.184 4.184 8 C 0.053 3.947 9 O -0.223 6.223 10 C -0.070 4.070 11 C -0.039 4.039 12 N -0.246 5.246 13 C -0.077 4.077 14 C -0.142 4.142 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.076 4.076 25 C -0.154 4.154 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.975 -9.216 18.714 21.446 hybrid contribution 0.284 -0.510 -0.905 1.077 sum -4.691 -9.726 17.809 20.827 Atomic orbital electron populations 1.23031 0.78844 1.03740 1.01185 1.86153 1.20802 1.25993 1.89265 1.18116 0.89111 0.85042 1.02694 1.20935 0.99657 0.90967 1.07426 1.19231 0.93004 0.94153 1.00885 1.20164 0.93233 0.96379 1.00288 1.20980 1.00364 0.90471 1.06603 1.18146 0.88163 0.86082 1.02326 1.86140 1.18585 1.28370 1.89180 1.23067 0.78706 1.03709 1.01468 1.21195 0.96058 0.84814 1.01873 1.62731 1.13809 1.42964 1.05137 1.22367 0.99864 1.00011 0.85489 1.21655 0.94727 1.00555 0.97280 1.19055 0.96877 0.96955 0.88596 1.21252 0.95358 1.47759 0.91199 0.92716 1.25024 0.95966 0.95442 0.98042 1.69972 1.24989 1.49785 1.08852 0.86618 0.83556 0.78365 0.79614 1.20737 1.21247 1.19842 1.22218 0.90843 0.96652 0.97871 1.21102 0.98010 0.93347 1.02919 0.88372 0.92930 0.92686 0.85032 0.84668 0.88352 0.92360 0.92816 0.89848 0.88706 0.94496 0.91269 0.92650 0.93575 0.96922 0.96665 0.93087 0.90855 0.90090 0.90661 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.25 10.29 -34.04 -0.35 -4.60 16 3 C 0.10 1.39 6.70 -39.19 -0.26 1.13 16 4 C -0.17 -2.25 8.66 -39.37 -0.34 -2.59 16 5 C -0.07 -0.99 5.05 -104.56 -0.53 -1.52 16 6 C -0.10 -1.40 5.21 -104.58 -0.54 -1.95 16 7 C -0.16 -2.28 8.65 -39.35 -0.34 -2.62 16 8 C 0.10 1.45 6.69 -39.20 -0.26 1.19 16 9 O -0.31 -4.39 10.29 -34.03 -0.35 -4.74 16 10 C 0.03 0.25 9.81 101.05 0.99 1.25 16 11 C 0.09 1.23 5.42 -5.15 -0.03 1.21 16 12 N -0.53 -7.80 5.02 -236.18 -1.19 -8.99 16 13 C 0.05 0.88 3.95 -3.82 -0.02 0.86 16 14 C -0.10 -2.20 5.10 -26.73 -0.14 -2.33 16 15 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 17 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.05 0.63 6.03 -3.73 -0.02 0.61 16 25 C -0.12 -1.37 5.16 -27.92 -0.14 -1.51 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.13 1.40 6.29 -52.49 -0.33 1.07 16 30 H 0.14 1.58 6.28 -52.49 -0.33 1.25 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 33 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.41 6.03 -51.93 -0.31 1.09 16 36 H 0.04 0.69 5.86 -51.93 -0.30 0.38 16 37 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.96 6.35 -51.93 -0.33 0.63 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.05 7.03 -51.93 -0.37 0.68 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -33.34 361.36 -9.24 -42.58 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.33 Total: -1.72 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.19 Total: -18.26 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.45 Total: -35.62 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.70 Total: -9.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.34 -9.24 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042312821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.347 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds