Wall clock time and date at job start Tue Mar 31 2020 10:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 117.00059 * 2 1 4 4 C 1.38367 * 120.16302 * 359.97438 * 3 2 1 5 5 C 1.38693 * 120.38908 * 180.02562 * 4 3 2 6 6 C 1.37906 * 119.96003 * 359.87508 * 5 4 3 7 7 C 1.38735 * 119.85487 * 359.92587 * 6 5 4 8 8 C 1.38355 * 120.41134 * 0.40747 * 7 6 5 9 9 O 1.35994 * 120.14337 * 179.73151 * 8 7 6 10 10 C 1.42893 * 117.00037 * 359.72720 * 9 8 7 11 11 C 1.50656 * 121.82307 * 180.20676 * 6 5 4 12 12 N 1.46620 * 110.50386 * 342.53867 * 11 6 5 13 13 C 1.46900 * 110.99971 * 289.14843 * 12 11 6 14 14 C 1.53004 * 109.46744 * 293.95119 * 13 12 11 15 15 C 1.53002 * 109.47070 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47228 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00272 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00145 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99661 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00040 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47124 * 89.99905 * 20 18 16 22 22 H 1.48503 * 109.46881 * 209.99497 * 20 18 16 23 23 H 1.48492 * 109.47171 * 329.99887 * 20 18 16 24 24 C 1.47166 * 110.23347 * 52.55394 * 12 11 6 25 25 C 1.50735 * 118.39557 * 179.78097 * 5 4 3 26 26 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47014 * 300.00213 * 1 2 3 28 28 H 1.08997 * 109.46949 * 60.00188 * 1 2 3 29 29 H 1.07998 * 119.80986 * 0.03087 * 4 3 2 30 30 H 1.07995 * 119.79488 * 180.13796 * 7 6 5 31 31 H 1.09004 * 109.46996 * 179.97438 * 10 9 8 32 32 H 1.08998 * 109.47409 * 299.99546 * 10 9 8 33 33 H 1.09004 * 109.47200 * 60.00225 * 10 9 8 34 34 H 1.09000 * 109.26476 * 102.80257 * 11 6 5 35 35 H 1.09001 * 109.26698 * 222.30540 * 11 6 5 36 36 H 1.08992 * 109.47296 * 53.95073 * 13 12 11 37 37 H 1.09001 * 109.47228 * 173.95414 * 13 12 11 38 38 H 1.09002 * 109.47311 * 299.99992 * 14 13 12 39 39 H 1.09001 * 109.47017 * 60.00166 * 14 13 12 40 40 H 1.09002 * 109.46884 * 300.00054 * 15 14 13 41 41 H 1.09001 * 109.47228 * 60.00095 * 15 14 13 42 42 H 0.97000 * 119.99280 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.63227 * 48.37406 * 24 12 11 44 44 H 1.09001 * 109.63430 * 168.97302 * 24 12 11 45 45 H 1.09006 * 109.38774 * 43.14177 * 25 5 4 46 46 H 1.08995 * 109.30366 * 283.39716 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2961 2.3743 -0.0005 5 6 1.9209 3.6125 -0.0011 6 6 3.2978 3.6892 0.0015 7 6 4.0542 2.5262 0.0062 8 6 3.4359 1.2885 -0.0001 9 8 4.1827 0.1520 -0.0010 10 6 5.6030 0.3090 -0.0011 11 6 4.0199 5.0114 0.0057 12 7 3.1169 6.0909 -0.4056 13 6 2.8024 5.9972 -1.8375 14 6 4.0700 6.2513 -2.6558 15 6 3.7423 6.1544 -4.1472 16 6 4.9909 6.4040 -4.9531 17 1 5.9248 6.6115 -4.4518 18 6 4.9409 6.3685 -6.3305 19 7 3.8036 6.1163 -6.9410 20 14 6.4888 6.6773 -7.3296 21 1 7.1882 5.3894 -7.5695 22 1 6.1235 7.2921 -8.6310 23 1 7.3852 7.5956 -6.5824 24 6 1.8900 6.0655 0.4066 25 6 1.0600 4.8499 -0.0067 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2176 2.3173 -0.0004 30 1 5.1324 2.5873 0.0105 31 1 6.0771 -0.6725 -0.0014 32 1 5.9076 0.8602 -0.8908 33 1 5.9078 0.8591 0.8892 34 1 4.3906 5.2156 1.0102 35 1 4.8614 4.9639 -0.6855 36 1 2.4192 5.0017 -2.0609 37 1 2.0492 6.7424 -2.0936 38 1 4.4532 7.2470 -2.4324 39 1 4.8232 5.5062 -2.3997 40 1 3.3588 5.1589 -4.3709 41 1 2.9892 6.8998 -4.4029 42 1 3.7684 6.0918 -7.9100 43 1 2.1511 5.9890 1.4621 44 1 1.3170 6.9764 0.2332 45 1 0.2350 4.7199 0.6939 46 1 0.6620 5.0073 -1.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042312821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:25 Heat of formation + Delta-G solvation = -74.890025 kcal Electronic energy + Delta-G solvation = -25504.938025 eV Core-core repulsion = 21972.996970 eV Total energy + Delta-G solvation = -3531.941055 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95443 -40.25336 -39.44484 -37.19387 -35.70509 -33.87117 -33.11318 -31.42950 -29.89868 -28.79541 -28.16516 -28.09078 -25.73380 -24.49570 -23.47317 -23.01138 -22.05606 -20.29333 -19.26186 -18.49191 -17.97221 -17.67213 -17.09027 -16.69235 -16.35893 -16.18167 -16.13263 -16.03173 -15.58516 -15.36779 -15.14965 -14.69723 -14.38026 -14.15283 -13.75567 -13.47011 -13.42029 -13.18729 -13.09261 -12.91805 -12.71205 -12.59051 -12.49718 -12.33168 -12.22795 -12.21097 -12.08854 -11.69546 -11.45606 -11.37213 -11.24198 -11.06780 -10.54551 -9.63266 -9.27600 -8.72204 -8.19660 -6.30622 0.22354 0.34496 1.39621 1.41132 1.52529 2.31531 2.32831 2.41085 2.59325 3.04284 3.13551 3.64591 3.70914 3.89491 4.06130 4.15249 4.16933 4.23350 4.30867 4.34919 4.35687 4.36945 4.40470 4.49398 4.60772 4.66084 4.68027 4.69279 4.70968 4.75642 4.85344 4.91826 4.96448 5.03679 5.12330 5.16334 5.19032 5.27836 5.52665 5.53707 5.70953 5.76301 5.86545 6.05437 6.11514 6.18094 6.28430 6.56952 6.86307 7.38606 8.92397 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003737 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.772196 B = 7491.440274 C = 8243.440623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.079 3.921 4 C -0.172 4.172 5 C -0.083 4.083 6 C -0.114 4.114 7 C -0.170 4.170 8 C 0.077 3.923 9 O -0.330 6.330 10 C 0.018 3.982 11 C 0.091 3.909 12 N -0.529 5.529 13 C 0.066 3.934 14 C -0.090 4.090 15 C 0.028 3.972 16 C -0.541 4.541 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.261 1.261 24 C 0.052 3.948 25 C -0.111 4.111 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.120 0.880 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.047 0.953 40 H -0.017 1.017 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -9.009 20.004 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.034 3.966 4 C -0.191 4.191 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.189 4.189 8 C 0.032 3.968 9 O -0.244 6.244 10 C -0.076 4.076 11 C -0.037 4.037 12 N -0.250 5.250 13 C -0.062 4.062 14 C -0.128 4.128 15 C -0.009 4.009 16 C -0.579 4.579 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.075 4.075 25 C -0.149 4.149 26 H 0.137 0.863 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.002 0.998 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.580 -8.929 19.929 22.313 hybrid contribution 0.116 -0.661 -1.252 1.421 sum -4.464 -9.590 18.677 21.465 Atomic orbital electron populations 1.23329 0.76661 1.05520 1.02073 1.86119 1.23179 1.25951 1.89258 1.18420 0.89499 0.85785 1.02898 1.21184 1.00789 0.90387 1.06702 1.19528 0.93168 0.95093 1.00596 1.20306 0.93762 0.96511 1.00989 1.21162 1.01196 0.90224 1.06352 1.18445 0.88791 0.86565 1.02986 1.86104 1.20452 1.28616 1.89273 1.23321 0.76910 1.05342 1.02014 1.21200 0.95326 0.84546 1.02618 1.62675 1.15437 1.43446 1.03433 1.22018 0.97680 0.99183 0.87278 1.21407 0.96538 1.00521 0.94288 1.18938 0.95534 0.94325 0.92148 1.21693 0.96252 1.47910 0.92087 0.92202 1.25988 0.99554 0.94908 0.99377 1.70108 1.27440 1.50583 1.09341 0.85460 0.79205 0.78659 0.77822 1.19868 1.20654 1.18554 1.22348 0.89699 0.97250 0.98229 1.21104 0.98460 0.92410 1.02974 0.86290 0.91333 0.92380 0.82811 0.83304 0.86190 0.92693 0.91313 0.87602 0.90129 0.95794 0.91263 0.92691 0.93418 0.99840 0.98964 0.92828 0.88968 0.88937 0.87900 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -9.03 10.29 -79.82 -0.82 -9.86 16 3 C 0.08 2.30 6.70 22.52 0.15 2.45 16 4 C -0.17 -4.36 8.66 22.41 0.19 -4.17 16 5 C -0.08 -2.19 5.05 -19.82 -0.10 -2.29 16 6 C -0.11 -3.15 5.21 -19.84 -0.10 -3.25 16 7 C -0.17 -4.67 8.65 22.42 0.19 -4.48 16 8 C 0.08 2.31 6.69 22.52 0.15 2.46 16 9 O -0.33 -9.44 10.29 -79.80 -0.82 -10.26 16 10 C 0.02 0.35 9.81 113.37 1.11 1.47 16 11 C 0.09 2.42 5.42 85.60 0.46 2.88 16 12 N -0.53 -14.94 5.02 -901.15 -4.53 -19.47 16 13 C 0.07 2.33 3.95 86.30 0.34 2.67 16 14 C -0.09 -3.82 5.10 30.60 0.16 -3.67 16 15 C 0.03 1.53 4.97 29.85 0.15 1.68 16 16 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 18 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 19 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 20 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 24 C 0.05 1.13 6.03 86.22 0.52 1.65 16 25 C -0.11 -2.43 5.16 29.82 0.15 -2.27 16 26 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 0.92 7.67 -2.39 -0.02 0.90 16 28 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 29 H 0.15 3.01 6.29 -2.91 -0.02 3.00 16 30 H 0.15 3.45 6.28 -2.91 -0.02 3.43 16 31 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.05 1.07 7.68 -2.39 -0.02 1.06 16 33 H 0.07 1.09 7.65 -2.38 -0.02 1.07 16 34 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.08 2.35 6.03 -2.39 -0.01 2.34 16 36 H 0.02 0.90 5.86 -2.39 -0.01 0.89 16 37 H 0.07 2.42 8.09 -2.39 -0.02 2.40 16 38 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.05 2.00 6.35 -2.39 -0.02 1.98 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.07 1.71 7.03 -2.39 -0.02 1.70 16 Total: -1.00 -72.75 361.36 2.29 -70.46 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.96 Total: 14.29 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 5.19 Total: -34.39 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -4.24 Total: -77.23 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.64 Total: -20.12 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -72.75 2.29 -70.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042312821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.432 kcal (2) G-P(sol) polarization free energy of solvation -72.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds