Wall clock time and date at job start Tue Mar 31 2020 08:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.46890 * 2 1 4 4 C 1.46900 * 111.00085 * 74.83664 * 3 2 1 5 5 C 1.53005 * 109.47206 * 189.99877 * 4 3 2 6 6 H 1.09004 * 109.46720 * 304.99514 * 5 4 3 7 7 O 1.42897 * 109.47175 * 64.99365 * 5 4 3 8 8 C 1.52994 * 109.47146 * 184.99893 * 5 4 3 9 9 O 1.42902 * 109.47297 * 174.99918 * 8 5 4 10 10 C 1.35677 * 117.00346 * 179.97438 * 9 8 5 11 11 C 1.39311 * 119.81387 * 359.72449 * 10 9 8 12 12 C 1.36444 * 120.18325 * 179.76237 * 11 10 9 13 13 C 1.40826 * 119.81021 * 0.51116 * 12 11 10 14 14 C 1.41212 * 120.18151 * 179.72294 * 13 12 11 15 15 H 1.08003 * 119.99968 * 29.00762 * 14 13 12 16 16 C 1.39891 * 120.00027 * 209.01013 * 14 13 12 17 17 N 1.30879 * 120.00012 * 11.16534 * 16 14 13 18 18 Si 1.86800 * 120.00091 * 191.15927 * 16 14 13 19 19 H 1.48502 * 109.47172 * 90.00204 * 18 16 14 20 20 H 1.48497 * 109.47454 * 210.00243 * 18 16 14 21 21 H 1.48504 * 109.47212 * 330.00437 * 18 16 14 22 22 C 1.40839 * 119.64314 * 359.74297 * 13 12 11 23 23 C 1.36437 * 119.80874 * 359.97438 * 22 13 12 24 24 C 1.46901 * 110.99765 * 198.78365 * 3 2 1 25 25 C 1.53007 * 117.49773 * 131.30200 * 24 3 2 26 26 C 1.52999 * 117.49730 * 62.64379 * 24 3 2 27 27 H 1.09002 * 109.47115 * 294.52734 * 1 2 3 28 28 H 1.08999 * 109.47212 * 54.52397 * 1 2 3 29 29 H 1.08997 * 109.47228 * 174.52097 * 1 2 3 30 30 H 1.09000 * 109.46735 * 120.00157 * 2 1 3 31 31 H 1.08995 * 109.47021 * 239.99590 * 2 1 3 32 32 H 1.08997 * 109.46914 * 309.99418 * 4 3 2 33 33 H 1.08997 * 109.47430 * 69.99767 * 4 3 2 34 34 H 0.96709 * 113.99538 * 60.00487 * 7 5 4 35 35 H 1.09007 * 109.47311 * 294.99475 * 8 5 4 36 36 H 1.09001 * 109.47338 * 54.99665 * 8 5 4 37 37 H 1.08000 * 119.90880 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.09532 * 180.25057 * 12 11 10 39 39 H 0.97008 * 119.99992 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.09825 * 179.97438 * 22 13 12 41 41 H 1.08006 * 119.90603 * 179.97438 * 23 22 13 42 42 H 1.08999 * 115.55265 * 276.96889 * 24 3 2 43 43 H 1.08995 * 117.49677 * 359.97438 * 25 24 3 44 44 H 1.08991 * 117.49902 * 145.02327 * 25 24 3 45 45 H 1.09004 * 117.49777 * 214.97822 * 26 24 3 46 46 H 1.09008 * 117.50053 * 359.97357 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8569 2.0009 1.3237 5 6 2.1400 3.5013 1.2263 6 1 3.1280 3.6572 0.7930 7 8 1.1535 4.1195 0.3977 8 6 2.0929 4.1210 2.6244 9 8 2.4711 5.4969 2.5486 10 6 2.4810 6.1980 3.7102 11 6 2.1259 5.5693 4.9016 12 6 2.1379 6.2659 6.0748 13 6 2.5002 7.6267 6.0774 14 6 2.5097 8.3566 7.2862 15 1 2.7066 7.8516 8.2204 16 6 2.2640 9.7337 7.2738 17 7 1.8129 10.3081 6.1877 18 14 2.5794 10.7527 8.8073 19 1 3.9773 11.2534 8.7899 20 1 1.6417 11.9037 8.8384 21 1 2.3701 9.9109 10.0127 22 6 2.8527 8.2560 4.8677 23 6 2.8411 7.5437 3.7041 24 6 3.4192 1.4485 -0.4416 25 6 3.7750 2.4783 -1.5159 26 6 3.7318 0.9889 -1.8671 27 1 -0.3633 0.4266 0.9349 28 1 -0.3633 0.5964 -0.8369 29 1 -0.3633 -1.0229 -0.0981 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 0.8363 1.8457 1.6735 33 1 2.5549 1.5442 2.0253 34 1 0.2483 4.0205 0.7234 35 1 1.0809 4.0438 3.0221 36 1 2.7827 3.5901 3.2806 37 1 1.8445 4.5267 4.8973 38 1 1.8663 5.7760 6.9983 39 1 1.6421 11.2630 6.1792 40 1 3.1313 9.2994 4.8612 41 1 3.1108 8.0248 2.7755 42 1 4.1646 1.2456 0.3274 43 1 2.9705 3.1082 -1.8952 44 1 4.7544 2.9523 -1.4539 45 1 4.6829 0.4839 -2.0360 46 1 2.8989 0.6390 -2.4771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044381271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:38 Heat of formation + Delta-G solvation = -41.338576 kcal Electronic energy + Delta-G solvation = -24545.424028 eV Core-core repulsion = 21014.937874 eV Total energy + Delta-G solvation = -3530.486155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.45185 -38.65886 -37.02217 -35.92655 -34.77854 -33.26174 -31.42756 -29.95874 -29.20967 -28.74639 -25.76260 -24.53727 -22.93063 -22.22864 -22.07696 -20.72952 -20.54662 -20.27890 -17.33550 -17.32043 -16.65379 -16.31192 -15.92803 -15.33450 -15.21262 -14.97439 -14.63125 -14.04184 -13.95667 -13.88989 -13.33361 -13.15521 -12.82913 -12.46595 -12.26312 -12.18067 -12.12369 -11.94098 -11.72518 -11.64631 -11.39263 -11.15219 -11.08044 -10.96003 -10.79412 -10.64609 -10.48584 -10.31440 -9.93642 -9.84303 -9.79025 -9.29726 -9.07196 -8.53389 -7.63894 -6.95938 -6.65599 -4.26358 2.79375 2.95113 3.10294 3.13447 3.21638 3.33814 3.59734 3.97587 4.00986 4.51648 4.67071 4.71143 4.74812 4.79206 4.91390 4.97692 5.03429 5.12297 5.22633 5.27987 5.34843 5.41342 5.44017 5.51921 5.59287 5.62510 5.67326 5.71842 5.85433 5.98120 6.06169 6.08709 6.11760 6.23191 6.72464 6.78782 6.88702 6.98310 7.12457 7.21205 7.47391 7.57419 7.78643 7.81971 8.02496 8.22403 8.46547 8.67069 8.92806 8.99778 10.29476 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.033536 B = 0.002387 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.715224 B =11726.363545 C =12060.573267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 N -0.499 5.499 4 C 0.029 3.971 5 C 0.119 3.881 6 H 0.106 0.894 7 O -0.539 6.539 8 C 0.037 3.963 9 O -0.316 6.316 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.193 4.193 13 C 0.086 3.914 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.808 5.808 18 Si 0.911 3.089 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.001 4.001 25 C -0.157 4.157 26 C -0.174 4.174 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.368 0.632 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.279 0.721 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -17.017 -11.279 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 N -0.223 5.223 4 C -0.099 4.099 5 C 0.059 3.941 6 H 0.124 0.876 7 O -0.342 6.342 8 C -0.040 4.040 9 O -0.232 6.232 10 C -0.045 4.045 11 C -0.191 4.191 12 C -0.213 4.213 13 C 0.084 3.916 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.144 4.144 17 N -0.435 5.435 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.110 4.110 25 C -0.194 4.194 26 C -0.212 4.212 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.215 0.785 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.404 -16.301 -12.227 20.381 hybrid contribution -0.033 -0.333 1.985 2.013 sum 0.372 -16.633 -10.242 19.537 Atomic orbital electron populations 1.21789 0.94777 1.01442 1.02536 1.22082 0.96093 0.88574 1.00908 1.61717 1.17176 1.17198 1.26253 1.22761 1.02089 0.95429 0.89644 1.21823 0.94232 0.88780 0.89302 0.87619 1.86634 1.18086 1.78307 1.51198 1.23144 0.99712 0.83778 0.97364 1.85898 1.85514 1.20838 1.30916 1.18668 1.09963 0.92121 0.83780 1.20400 1.07317 0.98134 0.93286 1.20614 1.08708 0.96239 0.95745 1.17607 0.89557 0.90910 0.93529 1.19442 1.43500 0.92432 0.94213 0.90692 1.25853 0.92587 0.98392 0.97525 1.69799 1.32932 1.12312 1.28463 0.86279 0.78979 0.79249 0.81942 1.19435 1.20392 1.18824 1.21034 1.02020 1.00074 0.91329 1.19871 1.04997 0.91009 0.98282 1.22434 0.89797 1.06678 0.92080 1.23110 1.02888 0.91913 1.01538 1.23037 1.02618 0.98527 0.96981 0.92850 0.91621 0.92424 0.94896 0.90678 0.89931 0.93723 0.78543 0.92970 0.92724 0.88972 0.88741 0.91033 0.85502 0.88371 0.89632 0.87528 0.88836 0.88913 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.92 37.16 0.37 -0.74 16 2 C 0.05 0.42 5.66 -3.83 -0.02 0.40 16 3 N -0.50 -4.96 4.52 -226.65 -1.03 -5.99 16 4 C 0.03 0.30 4.43 -3.82 -0.02 0.28 16 5 C 0.12 1.55 3.22 -26.73 -0.09 1.46 16 6 H 0.11 1.50 6.67 -51.93 -0.35 1.15 16 7 O -0.54 -7.61 13.25 -40.08 -0.53 -8.14 16 8 C 0.04 0.58 4.37 37.15 0.16 0.74 16 9 O -0.32 -6.57 10.09 -23.58 -0.24 -6.81 16 10 C 0.00 -0.05 6.71 -38.79 -0.26 -0.31 16 11 C -0.17 -3.91 8.96 -39.83 -0.36 -4.27 16 12 C -0.19 -4.78 9.74 -39.25 -0.38 -5.16 16 13 C 0.09 2.32 5.55 -106.81 -0.59 1.73 16 14 C -0.47 -12.46 9.05 -37.83 -0.34 -12.80 16 15 H 0.07 1.93 7.87 -52.48 -0.41 1.51 16 16 C 0.07 1.83 5.24 -17.34 -0.09 1.74 16 17 N -0.81 -21.25 10.87 55.54 0.60 -20.65 16 18 Si 0.91 18.98 29.57 -169.99 -5.03 13.95 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 22 C -0.13 -3.31 8.60 -39.25 -0.34 -3.65 16 23 C -0.12 -3.02 9.92 -39.83 -0.40 -3.42 16 24 C 0.00 -0.01 4.18 -67.71 -0.28 -0.30 16 25 C -0.16 -1.56 9.76 -26.69 -0.26 -1.82 16 26 C -0.17 -1.45 9.58 -26.69 -0.26 -1.70 16 27 H 0.05 0.41 6.93 -51.93 -0.36 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.27 8.01 -51.93 -0.42 -0.15 16 31 H 0.07 0.58 6.87 -51.93 -0.36 0.22 16 32 H 0.08 0.77 6.67 -51.93 -0.35 0.42 16 33 H 0.04 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.37 4.07 9.05 45.56 0.41 4.48 16 35 H 0.05 0.77 7.63 -51.93 -0.40 0.38 16 36 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 37 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.13 3.43 6.24 -52.49 -0.33 3.11 16 41 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 42 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.80 7.76 -51.92 -0.40 0.40 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -29.55 373.46 -10.36 -39.90 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.61 Total: 9.91 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -3.15 Total: -27.81 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: -0.42 Total: -26.63 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.77 Total: -14.95 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.55 -10.36 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044381271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.434 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds