Wall clock time and date at job start Tue Mar 31 2020 08:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.46890 * 2 1 4 4 C 1.46900 * 111.00085 * 74.83664 * 3 2 1 5 5 C 1.53005 * 109.47206 * 189.99877 * 4 3 2 6 6 H 1.09004 * 109.46720 * 304.99514 * 5 4 3 7 7 O 1.42897 * 109.47175 * 64.99365 * 5 4 3 8 8 C 1.52994 * 109.47146 * 184.99893 * 5 4 3 9 9 O 1.42902 * 109.47297 * 174.99918 * 8 5 4 10 10 C 1.35677 * 117.00346 * 179.97438 * 9 8 5 11 11 C 1.39311 * 119.81387 * 359.72449 * 10 9 8 12 12 C 1.36444 * 120.18325 * 179.76237 * 11 10 9 13 13 C 1.40826 * 119.81021 * 0.51116 * 12 11 10 14 14 C 1.41212 * 120.18151 * 179.72294 * 13 12 11 15 15 H 1.08003 * 119.99968 * 29.00762 * 14 13 12 16 16 C 1.39891 * 120.00027 * 209.01013 * 14 13 12 17 17 N 1.30879 * 120.00012 * 11.16534 * 16 14 13 18 18 Si 1.86800 * 120.00091 * 191.15927 * 16 14 13 19 19 H 1.48502 * 109.47172 * 90.00204 * 18 16 14 20 20 H 1.48497 * 109.47454 * 210.00243 * 18 16 14 21 21 H 1.48504 * 109.47212 * 330.00437 * 18 16 14 22 22 C 1.40839 * 119.64314 * 359.74297 * 13 12 11 23 23 C 1.36437 * 119.80874 * 359.97438 * 22 13 12 24 24 C 1.46901 * 110.99765 * 198.78365 * 3 2 1 25 25 C 1.53007 * 117.49773 * 131.30200 * 24 3 2 26 26 C 1.52999 * 117.49730 * 62.64379 * 24 3 2 27 27 H 1.09002 * 109.47115 * 294.52734 * 1 2 3 28 28 H 1.08999 * 109.47212 * 54.52397 * 1 2 3 29 29 H 1.08997 * 109.47228 * 174.52097 * 1 2 3 30 30 H 1.09000 * 109.46735 * 120.00157 * 2 1 3 31 31 H 1.08995 * 109.47021 * 239.99590 * 2 1 3 32 32 H 1.08997 * 109.46914 * 309.99418 * 4 3 2 33 33 H 1.08997 * 109.47430 * 69.99767 * 4 3 2 34 34 H 0.96709 * 113.99538 * 60.00487 * 7 5 4 35 35 H 1.09007 * 109.47311 * 294.99475 * 8 5 4 36 36 H 1.09001 * 109.47338 * 54.99665 * 8 5 4 37 37 H 1.08000 * 119.90880 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.09532 * 180.25057 * 12 11 10 39 39 H 0.97008 * 119.99992 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.09825 * 179.97438 * 22 13 12 41 41 H 1.08006 * 119.90603 * 179.97438 * 23 22 13 42 42 H 1.08999 * 115.55265 * 276.96889 * 24 3 2 43 43 H 1.08995 * 117.49677 * 359.97438 * 25 24 3 44 44 H 1.08991 * 117.49902 * 145.02327 * 25 24 3 45 45 H 1.09004 * 117.49777 * 214.97822 * 26 24 3 46 46 H 1.09008 * 117.50053 * 359.97357 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8569 2.0009 1.3237 5 6 2.1400 3.5013 1.2263 6 1 3.1280 3.6572 0.7930 7 8 1.1535 4.1195 0.3977 8 6 2.0929 4.1210 2.6244 9 8 2.4711 5.4969 2.5486 10 6 2.4810 6.1980 3.7102 11 6 2.1259 5.5693 4.9016 12 6 2.1379 6.2659 6.0748 13 6 2.5002 7.6267 6.0774 14 6 2.5097 8.3566 7.2862 15 1 2.7066 7.8516 8.2204 16 6 2.2640 9.7337 7.2738 17 7 1.8129 10.3081 6.1877 18 14 2.5794 10.7527 8.8073 19 1 3.9773 11.2534 8.7899 20 1 1.6417 11.9037 8.8384 21 1 2.3701 9.9109 10.0127 22 6 2.8527 8.2560 4.8677 23 6 2.8411 7.5437 3.7041 24 6 3.4192 1.4485 -0.4416 25 6 3.7750 2.4783 -1.5159 26 6 3.7318 0.9889 -1.8671 27 1 -0.3633 0.4266 0.9349 28 1 -0.3633 0.5964 -0.8369 29 1 -0.3633 -1.0229 -0.0981 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 0.8363 1.8457 1.6735 33 1 2.5549 1.5442 2.0253 34 1 0.2483 4.0205 0.7234 35 1 1.0809 4.0438 3.0221 36 1 2.7827 3.5901 3.2806 37 1 1.8445 4.5267 4.8973 38 1 1.8663 5.7760 6.9983 39 1 1.6421 11.2630 6.1792 40 1 3.1313 9.2994 4.8612 41 1 3.1108 8.0248 2.7755 42 1 4.1646 1.2456 0.3274 43 1 2.9705 3.1082 -1.8952 44 1 4.7544 2.9523 -1.4539 45 1 4.6829 0.4839 -2.0360 46 1 2.8989 0.6390 -2.4771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044381271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:37 Heat of formation + Delta-G solvation = -59.571753 kcal Electronic energy + Delta-G solvation = -24546.214678 eV Core-core repulsion = 21014.937874 eV Total energy + Delta-G solvation = -3531.276805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.73959 -39.88653 -38.43007 -37.33694 -35.52118 -35.14486 -32.42422 -31.64335 -30.94055 -29.97789 -27.09099 -26.14320 -23.62482 -23.52103 -22.80062 -22.53158 -22.15377 -21.08410 -19.24563 -18.76422 -17.79603 -17.42682 -17.11192 -16.84855 -16.29225 -16.05419 -15.74126 -15.54450 -15.29369 -15.09375 -14.78059 -14.18278 -14.05929 -13.94977 -13.80447 -13.50481 -13.30627 -13.03642 -12.90224 -12.80737 -12.62086 -12.57802 -12.39400 -12.35717 -11.95202 -11.71420 -11.66184 -11.58911 -11.26765 -11.20659 -11.03564 -10.94913 -10.87380 -9.57149 -9.26674 -8.86921 -8.54906 -6.25573 0.94172 1.01748 1.40096 1.51572 1.53723 2.23862 2.33236 2.75772 2.86791 2.90819 3.54007 3.68503 3.81542 3.97659 4.03058 4.05794 4.14192 4.14883 4.23602 4.27716 4.34470 4.37250 4.44920 4.51166 4.58739 4.68554 4.77615 4.81001 4.85898 4.97266 5.05424 5.08532 5.11336 5.12501 5.20841 5.29473 5.33574 5.39963 5.57782 5.64633 5.86861 6.06060 6.07096 6.16309 6.26450 6.56907 6.80213 6.89835 6.96481 7.09198 8.42075 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.033536 B = 0.002387 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.715224 B =11726.363545 C =12060.573267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.510 5.510 4 C 0.037 3.963 5 C 0.129 3.871 6 H 0.092 0.908 7 O -0.557 6.557 8 C 0.029 3.971 9 O -0.330 6.330 10 C 0.007 3.993 11 C -0.168 4.168 12 C -0.201 4.201 13 C 0.052 3.948 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.029 3.971 17 N -0.841 5.841 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.009 4.009 25 C -0.171 4.171 26 C -0.155 4.155 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.381 0.619 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.285 0.715 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -19.004 -11.025 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 N -0.234 5.234 4 C -0.091 4.091 5 C 0.069 3.931 6 H 0.110 0.890 7 O -0.363 6.363 8 C -0.047 4.047 9 O -0.246 6.246 10 C -0.037 4.037 11 C -0.187 4.187 12 C -0.221 4.221 13 C 0.050 3.950 14 C -0.530 4.530 15 H 0.094 0.906 16 C -0.184 4.184 17 N -0.469 5.469 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.182 1.182 22 C -0.164 4.164 23 C -0.157 4.157 24 C -0.117 4.117 25 C -0.209 4.209 26 C -0.193 4.193 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.140 -18.320 -11.990 21.895 hybrid contribution 0.018 0.149 1.744 1.750 sum 0.157 -18.171 -10.247 20.862 Atomic orbital electron populations 1.21765 0.94244 1.02166 1.02017 1.22136 0.96464 0.87562 1.01437 1.61689 1.17376 1.18352 1.25992 1.22641 1.03066 0.93154 0.90221 1.21725 0.93525 0.90406 0.87458 0.89049 1.86605 1.19174 1.78784 1.51768 1.23526 1.00573 0.81120 0.99476 1.85893 1.85481 1.23491 1.29742 1.18734 1.08144 0.91872 0.84928 1.20703 1.06073 0.99755 0.92164 1.20869 1.08373 0.95678 0.97172 1.17963 0.90760 0.92314 0.93920 1.19701 1.45283 0.93715 0.94293 0.90605 1.26738 0.91667 0.99096 1.00870 1.69873 1.33540 1.12947 1.30560 0.85152 0.79012 0.77469 0.77717 1.18813 1.19513 1.18211 1.20939 1.03544 0.99659 0.92211 1.20027 1.05444 0.92159 0.98073 1.22512 0.89871 1.06674 0.92691 1.23041 1.02348 0.92731 1.02744 1.23079 1.03424 0.96961 0.95792 0.92911 0.92661 0.91000 0.94370 0.90107 0.88620 0.92908 0.77073 0.91665 0.91447 0.85268 0.87437 0.90422 0.87199 0.87596 0.89404 0.89637 0.88577 0.87197 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.92 71.98 0.71 -1.13 16 2 C 0.05 0.72 5.66 86.31 0.49 1.21 16 3 N -0.51 -9.16 4.52 -870.98 -3.94 -13.10 16 4 C 0.04 0.68 4.43 86.30 0.38 1.06 16 5 C 0.13 3.16 3.22 30.59 0.10 3.26 16 6 H 0.09 2.52 6.67 -2.39 -0.02 2.51 16 7 O -0.56 -15.13 13.25 -144.34 -1.91 -17.05 16 8 C 0.03 0.85 4.37 71.98 0.31 1.16 16 9 O -0.33 -13.34 10.09 -85.31 -0.86 -14.20 16 10 C 0.01 0.33 6.71 22.79 0.15 0.48 16 11 C -0.17 -7.37 8.96 22.11 0.20 -7.17 16 12 C -0.20 -9.88 9.74 22.48 0.22 -9.66 16 13 C 0.05 2.89 5.55 -21.28 -0.12 2.77 16 14 C -0.50 -27.32 9.05 23.40 0.21 -27.10 16 15 H 0.08 3.97 7.87 -2.91 -0.02 3.94 16 16 C 0.03 1.47 5.24 85.24 0.45 1.92 16 17 N -0.84 -45.36 10.87 21.82 0.24 -45.13 16 18 Si 0.99 39.08 29.57 68.60 2.03 41.11 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 C -0.14 -7.87 8.60 22.49 0.19 -7.68 16 23 C -0.14 -6.93 9.92 22.11 0.22 -6.71 16 24 C -0.01 -0.16 4.18 44.92 0.19 0.03 16 25 C -0.17 -3.29 9.76 30.62 0.30 -3.00 16 26 C -0.16 -2.30 9.58 30.62 0.29 -2.01 16 27 H 0.05 0.67 6.93 -2.39 -0.02 0.66 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.51 8.01 -2.39 -0.02 0.49 16 31 H 0.08 1.05 6.87 -2.39 -0.02 1.03 16 32 H 0.10 1.50 6.67 -2.39 -0.02 1.48 16 33 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.38 7.84 9.05 -74.05 -0.67 7.17 16 35 H 0.07 1.74 7.63 -2.38 -0.02 1.72 16 36 H 0.07 1.80 7.66 -2.39 -0.02 1.78 16 37 H 0.13 4.61 6.27 -2.91 -0.02 4.59 16 38 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 40 H 0.11 6.26 6.24 -2.91 -0.02 6.24 16 41 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.10 1.44 7.76 -2.38 -0.02 1.43 16 Total: -1.00 -64.33 373.46 0.16 -64.17 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.30 Total: 36.74 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 4.30 Total: -52.56 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -3.70 Total: -58.22 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -2.77 Total: -31.24 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -64.33 0.16 -64.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044381271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.601 kcal (2) G-P(sol) polarization free energy of solvation -64.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds