Wall clock time and date at job start Tue Mar 31 2020 11:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35999 * 116.99850 * 2 1 4 4 C 1.38569 * 120.06960 * 359.97438 * 3 2 1 5 5 C 1.38243 * 119.99436 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14961 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.92841 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.46474 * 159.04049 * 7 6 5 9 9 C 1.54382 * 110.41203 * 281.45337 * 7 6 5 10 10 C 1.54257 * 105.06052 * 142.63050 * 9 7 6 11 11 C 1.54379 * 105.06256 * 0.02562 * 10 9 7 12 12 N 1.48562 * 104.69842 * 336.08765 * 11 10 9 13 13 C 1.46894 * 111.00344 * 159.09785 * 12 11 10 14 14 C 1.53003 * 109.47052 * 69.87193 * 13 12 11 15 15 C 1.50701 * 109.47171 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99601 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00347 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99532 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46983 * 60.00099 * 19 17 15 21 21 H 1.48494 * 109.46790 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47163 * 300.00036 * 19 17 15 23 23 C 1.38241 * 120.14286 * 0.23031 * 6 5 4 24 24 C 1.38566 * 120.00257 * 359.49242 * 23 6 5 25 25 O 1.35990 * 120.07407 * 180.25163 * 24 23 6 26 26 C 1.42905 * 117.00322 * 0.27902 * 25 24 23 27 27 H 1.09005 * 109.47054 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47267 * 299.99757 * 1 2 3 29 29 H 1.08997 * 109.47074 * 60.00564 * 1 2 3 30 30 H 1.07993 * 120.00137 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.92478 * 179.97438 * 5 4 3 32 32 H 1.08997 * 110.32536 * 23.73672 * 9 7 6 33 33 H 1.09002 * 110.40960 * 261.57105 * 9 7 6 34 34 H 1.08998 * 110.32238 * 241.10511 * 10 9 7 35 35 H 1.08997 * 110.41265 * 118.94038 * 10 9 7 36 36 H 1.09002 * 110.41258 * 94.92615 * 11 10 9 37 37 H 1.09002 * 110.41328 * 217.24846 * 11 10 9 38 38 H 1.09001 * 109.47519 * 189.87201 * 13 12 11 39 39 H 1.09003 * 109.46928 * 309.87844 * 13 12 11 40 40 H 1.08998 * 109.47110 * 300.00865 * 14 13 12 41 41 H 1.09003 * 109.46723 * 60.00525 * 14 13 12 42 42 H 0.97002 * 120.00097 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99725 * 179.74222 * 23 6 5 44 44 H 1.08994 * 109.47488 * 180.02562 * 26 25 24 45 45 H 1.09008 * 109.46490 * 299.99999 * 26 25 24 46 46 H 1.08998 * 109.46815 * 59.99566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 0.0000 6 6 3.3028 3.6799 0.0005 7 6 3.9835 5.0244 0.0005 8 1 5.0063 4.9337 0.3662 9 6 3.9709 5.6343 -1.4177 10 6 3.7512 7.1458 -1.2020 11 6 3.6501 7.3222 0.3283 12 7 3.2198 5.9930 0.8334 13 6 3.5462 5.8400 2.2574 14 6 2.6488 6.7597 3.0880 15 6 2.9832 6.6023 4.5490 16 1 3.7585 5.9153 4.8545 17 6 2.2993 7.3354 5.4955 18 7 1.3549 8.1716 5.1235 19 14 2.7143 7.1408 7.3065 20 1 4.1367 7.5041 7.5302 21 1 1.8425 8.0324 8.1126 22 1 2.4933 5.7306 7.7162 23 6 4.0601 2.5234 -0.0043 24 6 3.4359 1.2864 0.0010 25 8 4.1795 0.1478 0.0015 26 6 5.6003 0.3008 0.0025 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 0.2146 2.3196 -0.0005 31 1 1.3340 4.5115 -0.0008 32 1 3.1543 5.2128 -2.0038 33 1 4.9242 5.4575 -1.9159 34 1 2.8267 7.4662 -1.6823 35 1 4.5962 7.7124 -1.5930 36 1 4.6208 7.5912 0.7449 37 1 2.9078 8.0813 0.5753 38 1 3.3834 4.8051 2.5584 39 1 4.5904 6.1063 2.4215 40 1 2.8115 7.7946 2.7870 41 1 1.6046 6.4934 2.9239 42 1 0.8735 8.6870 5.7895 43 1 5.1385 2.5841 -0.0080 44 1 6.0716 -0.6820 0.0023 45 1 5.9071 0.8507 -0.8873 46 1 5.9058 0.8505 0.8927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045915168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:52 Heat of formation + Delta-G solvation = -48.703639 kcal Electronic energy + Delta-G solvation = -25414.754164 eV Core-core repulsion = 21883.948636 eV Total energy + Delta-G solvation = -3530.805528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54837 -38.90117 -38.37686 -36.42544 -33.66458 -31.83743 -31.16243 -30.20117 -28.51505 -28.12247 -27.26827 -26.35102 -24.34355 -22.58352 -21.94756 -21.36528 -20.06530 -19.66850 -18.33152 -16.99001 -16.68574 -16.26824 -16.03009 -15.49006 -15.23592 -15.02249 -14.64764 -14.47311 -14.41853 -13.94380 -13.51951 -13.27572 -12.99819 -12.74306 -12.38294 -12.22124 -12.07050 -11.84281 -11.74427 -11.58452 -11.19002 -11.17647 -11.02266 -10.92766 -10.84464 -10.79101 -10.57689 -10.46154 -10.32799 -9.79883 -9.36141 -9.12335 -8.56907 -8.32038 -7.91730 -7.60980 -5.97941 -4.00112 1.40598 1.61050 3.29837 3.31732 3.34310 3.38554 3.41181 3.83220 4.36752 4.51853 4.84694 4.87964 4.96513 5.00342 5.04245 5.11041 5.14980 5.21710 5.26628 5.29961 5.38081 5.40033 5.45527 5.46328 5.54439 5.62482 5.77825 5.80136 5.95707 5.99940 6.12572 6.18067 6.28093 6.36678 6.43166 6.51373 6.54027 6.82457 6.83950 6.99345 7.08115 7.40073 7.49803 7.64986 7.76889 7.90975 8.09229 8.45442 9.06729 9.63363 11.13381 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011349 B = 0.004013 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.486740 B = 6975.510723 C = 7997.004790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.091 3.909 4 C -0.174 4.174 5 C -0.078 4.078 6 C -0.060 4.060 7 C 0.099 3.901 8 H 0.053 0.947 9 C -0.112 4.112 10 C -0.124 4.124 11 C 0.036 3.964 12 N -0.501 5.501 13 C 0.054 3.946 14 C 0.032 3.968 15 C -0.522 4.522 16 H 0.052 0.948 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.168 4.168 24 C 0.091 3.909 25 O -0.310 6.310 26 C 0.028 3.972 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.015 0.985 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -11.929 -15.636 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.046 3.954 4 C -0.193 4.193 5 C -0.096 4.096 6 C -0.061 4.061 7 C -0.010 4.010 8 H 0.071 0.929 9 C -0.151 4.151 10 C -0.162 4.162 11 C -0.092 4.092 12 N -0.225 5.225 13 C -0.073 4.073 14 C -0.005 4.005 15 C -0.561 4.561 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.188 4.188 24 C 0.046 3.954 25 O -0.224 6.224 26 C -0.068 4.068 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.034 0.966 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.115 0.885 45 H 0.071 0.929 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.226 -12.263 -15.590 20.096 hybrid contribution 1.082 0.370 1.346 1.767 sum 4.308 -11.893 -14.244 19.050 Atomic orbital electron populations 1.23026 0.78871 1.03564 1.01343 1.86126 1.20784 1.26241 1.89363 1.18229 0.89052 0.85107 1.02987 1.21115 0.99865 0.91535 1.06804 1.20837 0.94086 0.97172 0.97520 1.19366 0.93637 0.93211 0.99908 1.21509 0.95004 0.90303 0.94160 0.92873 1.22310 1.01624 0.95503 0.95616 1.22321 1.01631 0.95649 0.96617 1.23045 0.99648 0.93176 0.93323 1.65460 1.51371 1.01348 1.04277 1.22483 0.98011 1.01413 0.85374 1.19019 0.95004 0.93751 0.92762 1.21156 1.19449 1.23673 0.91773 0.92965 1.24968 0.95065 0.95263 0.98859 1.69957 1.23356 1.26129 1.33822 0.86686 0.78249 0.78035 0.85198 1.20311 1.21253 1.20244 1.20872 0.99961 0.90695 1.07235 1.18084 0.88124 0.85786 1.03369 1.86135 1.18348 1.28467 1.89466 1.23015 0.79084 1.03455 1.01213 0.88568 0.92590 0.92873 0.84937 0.84288 0.91017 0.91802 0.91196 0.91843 0.94110 0.89662 0.92070 0.96117 0.96639 0.95784 0.92980 0.85251 0.88535 0.92948 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.44 10.28 -34.24 -0.35 -4.79 16 3 C 0.09 1.38 6.70 -39.12 -0.26 1.11 16 4 C -0.17 -2.47 9.04 -39.46 -0.36 -2.82 16 5 C -0.08 -1.18 9.27 -39.57 -0.37 -1.55 16 6 C -0.06 -0.91 4.57 -104.62 -0.48 -1.39 16 7 C 0.10 1.47 2.47 -67.07 -0.17 1.31 16 8 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 9 C -0.11 -1.39 6.54 -25.35 -0.17 -1.55 16 10 C -0.12 -1.56 7.00 -25.35 -0.18 -1.73 16 11 C 0.04 0.58 5.73 -2.18 -0.01 0.57 16 12 N -0.50 -8.94 4.24 -223.28 -0.95 -9.89 16 13 C 0.05 1.17 4.70 -3.83 -0.02 1.15 16 14 C 0.03 0.84 5.03 -27.88 -0.14 0.70 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.17 -2.37 8.67 -39.46 -0.34 -2.71 16 24 C 0.09 1.37 6.70 -39.12 -0.26 1.11 16 25 O -0.31 -4.40 10.28 -34.21 -0.35 -4.75 16 26 C 0.03 0.27 9.81 101.05 0.99 1.26 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.13 1.56 6.30 -52.49 -0.33 1.23 16 31 H 0.14 2.19 7.64 -52.49 -0.40 1.79 16 32 H 0.07 0.87 7.80 -51.93 -0.41 0.47 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 37 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 38 H 0.06 1.36 7.88 -51.93 -0.41 0.95 16 39 H 0.02 0.44 7.88 -51.93 -0.41 0.03 16 40 H 0.02 0.42 7.25 -51.93 -0.38 0.04 16 41 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 1.54 6.30 -52.48 -0.33 1.21 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.44 7.65 -51.92 -0.40 0.04 16 46 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -32.52 369.66 -9.09 -41.61 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.55 Total: -1.43 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.17 Total: -16.92 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.21 Total: -36.14 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.70 Total: -9.55 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.52 -9.09 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045915168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.094 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds