Wall clock time and date at job start Tue Mar 31 2020 10:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35906 * 116.99678 * 2 1 4 4 C 1.38755 * 120.06022 * 0.24807 * 3 2 1 5 5 C 1.38122 * 119.94119 * 180.32546 * 4 3 2 6 6 C 1.38290 * 120.05584 * 359.67204 * 5 4 3 7 7 C 1.38243 * 120.11318 * 0.03391 * 6 5 4 8 8 C 1.38162 * 120.05439 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.02642 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.47198 * 267.88309 * 9 8 7 11 11 C 1.46899 * 110.99737 * 292.70954 * 10 9 8 12 12 C 1.50705 * 109.46869 * 153.92832 * 11 10 9 13 13 H 1.08000 * 119.99906 * 122.81391 * 12 11 10 14 14 C 1.37876 * 120.00004 * 302.81506 * 12 11 10 15 15 N 1.31519 * 120.00066 * 3.20534 * 14 12 11 16 16 Si 1.86802 * 119.99978 * 183.20612 * 14 12 11 17 17 H 1.48505 * 109.47013 * 174.98567 * 16 14 12 18 18 H 1.48497 * 109.46838 * 54.98840 * 16 14 12 19 19 H 1.48496 * 109.47207 * 294.98716 * 16 14 12 20 20 C 1.46902 * 110.99738 * 168.75870 * 10 9 8 21 21 C 1.53004 * 109.46546 * 203.23100 * 20 10 9 22 22 H 1.09000 * 109.87124 * 49.20664 * 21 20 10 23 23 C 1.54103 * 109.87731 * 170.20761 * 21 20 10 24 24 C 1.54812 * 104.18462 * 121.45341 * 23 21 20 25 25 C 1.54993 * 102.09330 * 20.88630 * 24 23 21 26 26 O 1.43739 * 109.88139 * 288.04067 * 21 20 10 27 27 H 1.08997 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47436 * 300.00560 * 1 2 3 29 29 H 1.09003 * 109.46799 * 60.00450 * 1 2 3 30 30 H 1.07998 * 120.02597 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.96789 * 179.70532 * 5 4 3 32 32 H 1.08005 * 119.93892 * 180.02562 * 6 5 4 33 33 H 1.07993 * 119.97229 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47131 * 147.88309 * 9 8 7 35 35 H 1.09004 * 109.47057 * 27.88357 * 9 8 7 36 36 H 1.09002 * 109.47096 * 33.93202 * 11 10 9 37 37 H 1.08996 * 109.47524 * 273.92563 * 11 10 9 38 38 H 0.97000 * 119.99618 * 0.02562 * 15 14 12 39 39 H 1.08994 * 109.47026 * 323.22726 * 20 10 9 40 40 H 1.08996 * 109.47134 * 83.23457 * 20 10 9 41 41 H 1.08993 * 110.49168 * 240.12797 * 23 21 20 42 42 H 1.09001 * 110.48748 * 2.65448 * 23 21 20 43 43 H 1.09001 * 110.90574 * 139.07915 * 24 23 21 44 44 H 1.08997 * 110.90932 * 262.68724 * 24 23 21 45 45 H 1.08990 * 110.62333 * 81.47514 * 25 24 23 46 46 H 1.09005 * 110.61897 * 204.32228 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3754 0.0052 5 6 1.9209 3.6048 -0.0016 6 6 3.3020 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 0.0002 10 7 4.4732 -0.4198 -1.3835 11 6 3.2141 -0.8539 -2.0034 12 6 3.3064 -0.6867 -3.4982 13 1 3.1512 -1.5359 -4.1472 14 6 3.5891 0.5504 -4.0374 15 7 3.8404 1.5706 -3.2464 16 14 3.6152 0.7773 -5.8914 17 1 3.8220 2.2127 -6.2115 18 1 2.3223 0.3238 -6.4638 19 1 4.7222 -0.0239 -6.4727 20 6 5.4834 -1.4847 -1.4419 21 6 6.1051 -1.5216 -2.8395 22 1 6.4076 -0.5175 -3.1370 23 6 7.3274 -2.4601 -2.8446 24 6 6.9848 -3.5232 -3.9166 25 6 5.9091 -2.7960 -4.7630 26 8 5.1572 -2.0492 -3.7824 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2128 2.3204 0.0097 31 1 1.3340 4.5114 -0.0024 32 1 3.7922 4.6381 -0.0117 33 1 5.1343 2.5751 -0.0102 34 1 3.7247 -0.7559 0.5506 35 1 5.2149 0.2149 0.4769 36 1 2.3927 -0.2484 -1.6201 37 1 3.0345 -1.9023 -1.7655 38 1 3.8271 1.4526 -2.2837 39 1 6.2608 -1.2890 -0.7035 40 1 5.0125 -2.4443 -1.2283 41 1 8.2275 -1.9128 -3.1242 42 1 7.4537 -2.9273 -1.8679 43 1 7.8598 -3.7618 -4.5213 44 1 6.5751 -4.4221 -3.4559 45 1 6.3765 -2.1234 -5.4820 46 1 5.2698 -3.5169 -5.2728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045944923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:34 Heat of formation + Delta-G solvation = -28.825379 kcal Electronic energy + Delta-G solvation = -27309.732271 eV Core-core repulsion = 23779.788729 eV Total energy + Delta-G solvation = -3529.943542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.85335 -38.54177 -36.90751 -35.95958 -32.16608 -31.47728 -31.06660 -29.57016 -28.93321 -27.14579 -26.35444 -25.07349 -23.13056 -21.83240 -21.43602 -21.11245 -20.00495 -19.68917 -17.42303 -16.65636 -15.71692 -15.64949 -15.42581 -15.22241 -14.80724 -14.49036 -13.99901 -13.88027 -13.53180 -13.43734 -13.15559 -12.91432 -12.72700 -12.30648 -12.03535 -11.83844 -11.57546 -11.37423 -11.12552 -11.01928 -10.93572 -10.72649 -10.64385 -10.48982 -10.41810 -10.14386 -10.06032 -9.90064 -9.74288 -9.37678 -8.46826 -8.34726 -8.08987 -7.82937 -7.52408 -6.90390 -5.69310 -3.39728 1.96584 2.09689 3.64353 3.66302 3.80383 3.84551 4.35522 4.83370 4.90884 5.16716 5.21044 5.27693 5.35038 5.41033 5.45570 5.55314 5.59333 5.63975 5.79556 5.82548 5.91090 5.94373 5.96470 6.08026 6.12988 6.15646 6.18838 6.21856 6.27056 6.34132 6.39535 6.44273 6.55246 6.63563 6.74323 6.89499 7.02261 7.08536 7.17715 7.27147 7.40626 7.52379 7.96764 8.12380 8.34185 8.51488 8.86456 9.08321 9.56932 10.30298 11.71355 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.006055 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.655581 B = 4623.253136 C = 5191.186468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.305 6.305 3 C 0.138 3.862 4 C -0.211 4.211 5 C -0.089 4.089 6 C -0.153 4.153 7 C -0.053 4.053 8 C -0.085 4.085 9 C 0.094 3.906 10 N -0.514 5.514 11 C 0.168 3.832 12 C -0.549 4.549 13 H 0.047 0.953 14 C 0.038 3.962 15 N -0.907 5.907 16 Si 1.048 2.952 17 H -0.291 1.291 18 H -0.297 1.297 19 H -0.293 1.293 20 C 0.071 3.929 21 C 0.093 3.907 22 H 0.067 0.933 23 C -0.154 4.154 24 C -0.151 4.151 25 C 0.019 3.981 26 O -0.291 6.291 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.027 0.973 35 H 0.060 0.940 36 H 0.046 0.954 37 H -0.018 1.018 38 H 0.299 0.701 39 H 0.055 0.945 40 H 0.024 0.976 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -2.162 6.919 7.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.219 6.219 3 C 0.093 3.907 4 C -0.229 4.229 5 C -0.107 4.107 6 C -0.171 4.171 7 C -0.072 4.072 8 C -0.086 4.086 9 C -0.034 4.034 10 N -0.240 5.240 11 C 0.045 3.955 12 C -0.588 4.588 13 H 0.065 0.935 14 C -0.171 4.171 15 N -0.545 5.545 16 Si 0.880 3.120 17 H -0.217 1.217 18 H -0.224 1.224 19 H -0.220 1.220 20 C -0.058 4.058 21 C 0.034 3.966 22 H 0.085 0.915 23 C -0.192 4.192 24 C -0.189 4.189 25 C -0.059 4.059 26 O -0.209 6.209 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.000 1.000 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.883 -0.818 5.488 5.618 hybrid contribution -0.343 -1.782 1.272 2.216 sum 0.540 -2.600 6.760 7.263 Atomic orbital electron populations 1.22935 0.79724 1.03233 1.00737 1.86221 1.20363 1.27062 1.88227 1.18695 0.91904 0.83908 0.96211 1.21018 0.99234 0.92595 1.10089 1.20711 0.94666 0.96386 0.98970 1.20853 0.93790 0.97989 1.04499 1.20676 0.99439 0.90957 0.96132 1.19075 0.90150 0.95805 1.03575 1.20890 0.96751 0.92977 0.92757 1.62966 1.12586 1.36605 1.11813 1.20338 0.86861 0.92484 0.95846 1.21644 1.51041 0.96040 0.90062 0.93452 1.25163 0.94282 0.92800 1.04806 1.70501 1.42318 1.32933 1.08791 0.83899 0.75850 0.75118 0.77106 1.21744 1.22417 1.22029 1.22068 0.95119 0.93381 0.95201 1.22439 0.87107 0.96394 0.90620 0.91462 1.23046 0.99458 0.97583 0.99116 1.23095 0.99358 0.98641 0.97834 1.23561 0.93622 0.94579 0.94112 1.90155 1.25646 1.67919 1.37170 0.88918 0.93520 0.92704 0.86397 0.86793 0.86703 0.86099 0.95504 0.92112 0.93649 0.99998 0.88518 0.92686 0.95803 0.91700 0.91661 0.91825 0.91550 0.93687 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -6.03 7.24 -19.45 -0.14 -6.17 16 3 C 0.14 2.81 5.60 -39.21 -0.22 2.59 16 4 C -0.21 -3.83 9.04 -39.43 -0.36 -4.18 16 5 C -0.09 -1.53 10.04 -39.61 -0.40 -1.93 16 6 C -0.15 -2.72 10.04 -39.56 -0.40 -3.12 16 7 C -0.05 -1.04 8.87 -39.61 -0.35 -1.39 16 8 C -0.08 -1.77 3.51 -104.47 -0.37 -2.14 16 9 C 0.09 1.96 4.93 -4.97 -0.02 1.93 16 10 N -0.51 -12.20 2.87 -237.51 -0.68 -12.88 16 11 C 0.17 4.44 4.26 -4.97 -0.02 4.42 16 12 C -0.55 -15.70 5.76 -34.44 -0.20 -15.90 16 13 H 0.05 1.41 6.82 -52.49 -0.36 1.05 16 14 C 0.04 1.11 5.39 -17.82 -0.10 1.02 16 15 N -0.91 -27.26 13.49 55.43 0.75 -26.51 16 16 Si 1.05 26.70 29.90 -169.99 -5.08 21.62 16 17 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 C 0.07 1.50 4.61 -3.82 -0.02 1.48 16 21 C 0.09 1.98 3.31 -26.15 -0.09 1.89 16 22 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 23 C -0.15 -2.53 6.63 -25.20 -0.17 -2.69 16 24 C -0.15 -2.35 7.15 -24.72 -0.18 -2.53 16 25 C 0.02 0.35 7.72 38.21 0.29 0.65 16 26 O -0.29 -6.83 6.40 -35.23 -0.23 -7.05 16 27 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 29 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 30 H 0.12 1.83 6.30 -52.49 -0.33 1.50 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 36 H 0.05 1.23 3.56 -51.93 -0.19 1.05 16 37 H -0.02 -0.50 7.55 -51.93 -0.39 -0.89 16 38 H 0.30 8.45 3.40 -40.82 -0.14 8.31 16 39 H 0.05 1.01 7.62 -51.93 -0.40 0.62 16 40 H 0.02 0.52 7.58 -51.93 -0.39 0.12 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -33.21 350.21 -8.90 -42.11 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.21 Total: 2.07 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.59 Total: -18.48 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.07 Total: -39.39 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.37 Total: -13.22 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -5.08 Total: 21.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.21 -8.90 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045944923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.289 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds