Wall clock time and date at job start Tue Mar 31 2020 10:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35906 * 116.99678 * 2 1 4 4 C 1.38755 * 120.06022 * 0.24807 * 3 2 1 5 5 C 1.38122 * 119.94119 * 180.32546 * 4 3 2 6 6 C 1.38290 * 120.05584 * 359.67204 * 5 4 3 7 7 C 1.38243 * 120.11318 * 0.03391 * 6 5 4 8 8 C 1.38162 * 120.05439 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.02642 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.47198 * 267.88309 * 9 8 7 11 11 C 1.46899 * 110.99737 * 292.70954 * 10 9 8 12 12 C 1.50705 * 109.46869 * 153.92832 * 11 10 9 13 13 H 1.08000 * 119.99906 * 122.81391 * 12 11 10 14 14 C 1.37876 * 120.00004 * 302.81506 * 12 11 10 15 15 N 1.31519 * 120.00066 * 3.20534 * 14 12 11 16 16 Si 1.86802 * 119.99978 * 183.20612 * 14 12 11 17 17 H 1.48505 * 109.47013 * 174.98567 * 16 14 12 18 18 H 1.48497 * 109.46838 * 54.98840 * 16 14 12 19 19 H 1.48496 * 109.47207 * 294.98716 * 16 14 12 20 20 C 1.46902 * 110.99738 * 168.75870 * 10 9 8 21 21 C 1.53004 * 109.46546 * 203.23100 * 20 10 9 22 22 H 1.09000 * 109.87124 * 49.20664 * 21 20 10 23 23 C 1.54103 * 109.87731 * 170.20761 * 21 20 10 24 24 C 1.54812 * 104.18462 * 121.45341 * 23 21 20 25 25 C 1.54993 * 102.09330 * 20.88630 * 24 23 21 26 26 O 1.43739 * 109.88139 * 288.04067 * 21 20 10 27 27 H 1.08997 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47436 * 300.00560 * 1 2 3 29 29 H 1.09003 * 109.46799 * 60.00450 * 1 2 3 30 30 H 1.07998 * 120.02597 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.96789 * 179.70532 * 5 4 3 32 32 H 1.08005 * 119.93892 * 180.02562 * 6 5 4 33 33 H 1.07993 * 119.97229 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47131 * 147.88309 * 9 8 7 35 35 H 1.09004 * 109.47057 * 27.88357 * 9 8 7 36 36 H 1.09002 * 109.47096 * 33.93202 * 11 10 9 37 37 H 1.08996 * 109.47524 * 273.92563 * 11 10 9 38 38 H 0.97000 * 119.99618 * 0.02562 * 15 14 12 39 39 H 1.08994 * 109.47026 * 323.22726 * 20 10 9 40 40 H 1.08996 * 109.47134 * 83.23457 * 20 10 9 41 41 H 1.08993 * 110.49168 * 240.12797 * 23 21 20 42 42 H 1.09001 * 110.48748 * 2.65448 * 23 21 20 43 43 H 1.09001 * 110.90574 * 139.07915 * 24 23 21 44 44 H 1.08997 * 110.90932 * 262.68724 * 24 23 21 45 45 H 1.08990 * 110.62333 * 81.47514 * 25 24 23 46 46 H 1.09005 * 110.61897 * 204.32228 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3754 0.0052 5 6 1.9209 3.6048 -0.0016 6 6 3.3020 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0222 0.0002 10 7 4.4732 -0.4198 -1.3835 11 6 3.2141 -0.8539 -2.0034 12 6 3.3064 -0.6867 -3.4982 13 1 3.1512 -1.5359 -4.1472 14 6 3.5891 0.5504 -4.0374 15 7 3.8404 1.5706 -3.2464 16 14 3.6152 0.7773 -5.8914 17 1 3.8220 2.2127 -6.2115 18 1 2.3223 0.3238 -6.4638 19 1 4.7222 -0.0239 -6.4727 20 6 5.4834 -1.4847 -1.4419 21 6 6.1051 -1.5216 -2.8395 22 1 6.4076 -0.5175 -3.1370 23 6 7.3274 -2.4601 -2.8446 24 6 6.9848 -3.5232 -3.9166 25 6 5.9091 -2.7960 -4.7630 26 8 5.1572 -2.0492 -3.7824 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2128 2.3204 0.0097 31 1 1.3340 4.5114 -0.0024 32 1 3.7922 4.6381 -0.0117 33 1 5.1343 2.5751 -0.0102 34 1 3.7247 -0.7559 0.5506 35 1 5.2149 0.2149 0.4769 36 1 2.3927 -0.2484 -1.6201 37 1 3.0345 -1.9023 -1.7655 38 1 3.8271 1.4526 -2.2837 39 1 6.2608 -1.2890 -0.7035 40 1 5.0125 -2.4443 -1.2283 41 1 8.2275 -1.9128 -3.1242 42 1 7.4537 -2.9273 -1.8679 43 1 7.8598 -3.7618 -4.5213 44 1 6.5751 -4.4221 -3.4559 45 1 6.3765 -2.1234 -5.4820 46 1 5.2698 -3.5169 -5.2728 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045944923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:33 Heat of formation + Delta-G solvation = -48.169515 kcal Electronic energy + Delta-G solvation = -27310.571096 eV Core-core repulsion = 23779.788729 eV Total energy + Delta-G solvation = -3530.782367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30760 -40.12720 -38.35982 -37.64943 -34.21939 -33.00763 -32.59130 -30.99468 -30.49895 -28.77508 -27.95817 -26.60612 -25.04652 -23.48255 -22.88630 -22.55406 -21.52019 -21.43190 -18.81978 -18.70794 -17.28008 -17.11544 -16.92048 -16.70229 -16.35192 -16.05819 -15.63019 -15.52007 -15.26103 -15.05755 -14.82817 -14.33679 -14.29799 -14.02636 -13.50133 -13.30883 -13.12233 -12.92282 -12.76964 -12.68691 -12.41466 -12.32182 -12.19498 -12.07683 -11.96056 -11.85497 -11.63755 -11.51852 -11.45752 -11.21338 -10.33829 -10.18963 -9.98196 -9.64708 -8.98736 -8.79481 -7.87930 -5.62626 0.53120 0.66472 1.56244 1.63719 1.81612 2.48095 2.81616 2.90527 3.29017 3.53621 3.79147 3.85792 3.95789 3.96120 4.08320 4.19970 4.28925 4.29698 4.33756 4.38058 4.45080 4.48441 4.53999 4.61156 4.62505 4.67690 4.68843 4.76446 4.88319 4.91496 4.94738 4.97915 5.10333 5.15652 5.21748 5.26962 5.41643 5.45588 5.54460 5.62945 5.75547 6.02346 6.35034 6.51600 6.53260 6.60160 6.85425 6.92457 7.39399 8.12901 9.54521 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.006055 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.655581 B = 4623.253136 C = 5191.186468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.332 6.332 3 C 0.119 3.881 4 C -0.219 4.219 5 C -0.089 4.089 6 C -0.160 4.160 7 C -0.067 4.067 8 C -0.114 4.114 9 C 0.097 3.903 10 N -0.528 5.528 11 C 0.182 3.818 12 C -0.552 4.552 13 H 0.026 0.974 14 C 0.003 3.997 15 N -0.938 5.938 16 Si 1.082 2.918 17 H -0.294 1.294 18 H -0.287 1.287 19 H -0.285 1.285 20 C 0.070 3.930 21 C 0.091 3.909 22 H 0.028 0.972 23 C -0.144 4.144 24 C -0.137 4.137 25 C 0.008 3.992 26 O -0.332 6.332 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.021 0.979 35 H 0.081 0.919 36 H 0.041 0.959 37 H -0.041 1.041 38 H 0.305 0.695 39 H 0.084 0.916 40 H 0.016 0.984 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.254 -2.090 7.282 7.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.246 6.246 3 C 0.073 3.927 4 C -0.238 4.238 5 C -0.107 4.107 6 C -0.178 4.178 7 C -0.086 4.086 8 C -0.115 4.115 9 C -0.030 4.030 10 N -0.253 5.253 11 C 0.057 3.943 12 C -0.591 4.591 13 H 0.044 0.956 14 C -0.201 4.201 15 N -0.578 5.578 16 Si 0.910 3.090 17 H -0.220 1.220 18 H -0.214 1.214 19 H -0.212 1.212 20 C -0.058 4.058 21 C 0.033 3.967 22 H 0.046 0.954 23 C -0.182 4.182 24 C -0.175 4.175 25 C -0.069 4.069 26 O -0.251 6.251 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.059 0.941 37 H -0.023 1.023 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.509 -0.761 5.862 6.101 hybrid contribution -0.577 -1.836 1.211 2.274 sum 0.932 -2.597 7.073 7.592 Atomic orbital electron populations 1.23201 0.77537 1.04813 1.01703 1.86148 1.22754 1.27388 1.88305 1.18973 0.92191 0.84762 0.96757 1.21383 1.00527 0.92347 1.09516 1.21177 0.94859 0.97380 0.97267 1.21228 0.94343 0.98555 1.03699 1.20879 0.99973 0.91296 0.96463 1.19228 0.90823 0.96072 1.05427 1.20909 0.97887 0.93131 0.91071 1.62685 1.11573 1.37299 1.13695 1.20073 0.88221 0.90901 0.95091 1.21643 1.51026 0.95412 0.91011 0.95554 1.25981 0.94031 0.92715 1.07409 1.70521 1.44213 1.33426 1.09647 0.83431 0.76482 0.74863 0.74189 1.22019 1.21352 1.21190 1.22187 0.95136 0.92273 0.96217 1.22427 0.88701 0.95672 0.89948 0.95386 1.22989 0.97557 0.96931 1.00742 1.23030 0.99229 0.98093 0.97110 1.23742 0.94671 0.94664 0.93816 1.90008 1.27792 1.68793 1.38467 0.87202 0.90776 0.93336 0.84089 0.83358 0.84112 0.85701 0.96091 0.90089 0.94113 1.02280 0.87962 0.89824 0.96580 0.90100 0.89591 0.88670 0.90599 0.94350 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.75 16 2 O -0.33 -13.26 7.24 -92.49 -0.67 -13.93 16 3 C 0.12 4.83 5.60 22.51 0.13 4.95 16 4 C -0.22 -7.71 9.04 22.37 0.20 -7.50 16 5 C -0.09 -2.88 10.04 22.25 0.22 -2.65 16 6 C -0.16 -5.47 10.04 22.28 0.22 -5.24 16 7 C -0.07 -2.61 8.87 22.25 0.20 -2.41 16 8 C -0.11 -4.80 3.51 -19.77 -0.07 -4.87 16 9 C 0.10 4.11 4.93 85.56 0.42 4.53 16 10 N -0.53 -25.48 2.87 -905.35 -2.59 -28.07 16 11 C 0.18 9.91 4.26 85.56 0.36 10.27 16 12 C -0.55 -32.46 5.76 25.60 0.15 -32.32 16 13 H 0.03 1.63 6.82 -2.91 -0.02 1.61 16 14 C 0.00 0.19 5.39 84.65 0.46 0.65 16 15 N -0.94 -57.13 13.49 21.45 0.29 -56.84 16 16 Si 1.08 54.66 29.90 68.60 2.05 56.71 16 17 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 18 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 C 0.07 2.97 4.61 86.30 0.40 3.37 16 21 C 0.09 3.88 3.31 30.97 0.10 3.98 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 C -0.14 -4.40 6.63 31.59 0.21 -4.19 16 24 C -0.14 -3.89 7.15 31.89 0.23 -3.66 16 25 C 0.01 0.30 7.72 72.66 0.56 0.86 16 26 O -0.33 -15.81 6.40 -148.98 -0.95 -16.76 16 27 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.07 1.71 7.65 -2.39 -0.02 1.69 16 29 H 0.05 1.45 7.67 -2.39 -0.02 1.43 16 30 H 0.14 4.12 6.30 -2.91 -0.02 4.11 16 31 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 33 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 35 H 0.08 2.98 7.70 -2.38 -0.02 2.96 16 36 H 0.04 2.29 3.56 -2.39 -0.01 2.28 16 37 H -0.04 -2.34 7.55 -2.39 -0.02 -2.36 16 38 H 0.30 17.46 3.40 -92.71 -0.32 17.14 16 39 H 0.08 2.98 7.62 -2.39 -0.02 2.96 16 40 H 0.02 0.70 7.58 -2.39 -0.02 0.68 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.09 2.29 7.69 -2.39 -0.02 2.27 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 Total: -1.00 -73.87 350.21 4.43 -69.43 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.41 Total: 21.94 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 4.90 Total: -32.49 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.30 Total: -84.91 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.62 Total: -30.69 kcal Atomic # 14 Polarization: 54.66 SS G_CDS: 2.05 Total: 56.71 kcal Total: -73.87 4.43 -69.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045944923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.265 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds