Wall clock time and date at job start Tue Mar 31 2020 11:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35896 * 117.00093 * 2 1 4 4 C 1.38785 * 120.02805 * 0.02627 * 3 2 1 5 5 C 1.38160 * 120.05438 * 179.70400 * 4 3 2 6 6 C 1.38197 * 120.10762 * 0.54469 * 5 4 3 7 7 C 1.50698 * 119.96965 * 179.72401 * 6 5 4 8 8 H 1.09001 * 110.33366 * 217.47476 * 7 6 5 9 9 C 1.54916 * 110.37103 * 95.10308 * 7 6 5 10 10 C 1.55398 * 101.74107 * 204.18843 * 9 7 6 11 11 C 1.54322 * 102.90031 * 35.47831 * 10 9 7 12 12 N 1.47439 * 107.36952 * 337.89642 * 11 10 9 13 13 C 1.46904 * 111.00045 * 236.65966 * 12 11 10 14 14 C 1.53000 * 109.46800 * 290.12836 * 13 12 11 15 15 C 1.50704 * 109.47176 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99349 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00324 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99814 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00002 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47221 * 60.00022 * 19 17 15 21 21 H 1.48507 * 109.46998 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47117 * 299.99810 * 19 17 15 23 23 C 1.38744 * 120.05313 * 359.45344 * 6 5 4 24 24 O 1.35906 * 120.02563 * 180.29396 * 23 6 5 25 25 C 1.42898 * 117.00013 * 179.97438 * 24 23 6 26 26 C 1.38620 * 120.02640 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47238 * 299.99796 * 1 2 3 28 28 H 1.08996 * 109.47179 * 59.99695 * 1 2 3 29 29 H 1.09004 * 109.47637 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.97597 * 359.97438 * 4 3 2 31 31 H 1.08009 * 119.94432 * 180.29217 * 5 4 3 32 32 H 1.08995 * 110.98807 * 322.18723 * 9 7 6 33 33 H 1.08997 * 110.99078 * 86.00756 * 9 7 6 34 34 H 1.09005 * 110.67856 * 277.17709 * 10 9 7 35 35 H 1.08997 * 110.84583 * 153.86033 * 10 9 7 36 36 H 1.09002 * 109.89036 * 218.40745 * 11 10 9 37 37 H 1.09003 * 109.88743 * 97.38054 * 11 10 9 38 38 H 1.09004 * 109.46973 * 50.12514 * 13 12 11 39 39 H 1.08996 * 109.47528 * 170.13051 * 13 12 11 40 40 H 1.08997 * 109.47444 * 299.99462 * 14 13 12 41 41 H 1.08999 * 109.47770 * 60.00095 * 14 13 12 42 42 H 0.97001 * 119.99824 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.47002 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.46998 * 300.00353 * 25 24 23 45 45 H 1.09002 * 109.47100 * 59.99438 * 25 24 23 46 46 H 1.07996 * 120.05626 * 0.04145 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3752 0.0006 5 6 1.9173 3.6064 0.0067 6 6 3.2972 3.6820 0.0010 7 6 3.9775 5.0267 0.0015 8 1 4.8696 5.0001 -0.6243 9 6 4.3424 5.4460 1.4475 10 6 4.4100 6.9933 1.3206 11 6 3.2928 7.3046 0.3025 12 7 3.0477 6.0742 -0.4720 13 6 3.2159 6.3158 -1.9112 14 6 2.0729 7.1982 -2.4171 15 6 2.2457 7.4466 -3.8935 16 1 3.0869 7.0183 -4.4182 17 6 1.3306 8.2215 -4.5739 18 7 0.3066 8.7435 -3.9347 19 14 1.5452 8.5300 -6.4038 20 1 1.5283 7.2345 -7.1295 21 1 0.4358 9.3864 -6.8948 22 1 2.8416 9.2138 -6.6417 23 6 4.0567 2.5209 0.0005 24 8 5.4136 2.5959 0.0009 25 6 6.1317 1.3604 0.0009 26 6 3.4302 1.2840 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2121 2.3187 0.0006 31 1 1.3277 4.5114 0.0119 32 1 3.5632 5.1475 2.1489 33 1 5.3083 5.0351 1.7412 34 1 5.3805 7.3059 0.9354 35 1 4.2024 7.4704 2.2784 36 1 3.6118 8.1054 -0.3647 37 1 2.3842 7.5994 0.8276 38 1 4.1674 6.8177 -2.0867 39 1 3.2033 5.3646 -2.4433 40 1 1.1214 6.6963 -2.2418 41 1 2.0854 8.1495 -1.8852 42 1 -0.3374 9.2884 -4.4135 43 1 7.2027 1.5626 0.0017 44 1 5.8696 0.7879 0.8907 45 1 5.8701 0.7882 -0.8892 46 1 4.0196 0.3791 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050274303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:57 Heat of formation + Delta-G solvation = -48.857191 kcal Electronic energy + Delta-G solvation = -25554.136510 eV Core-core repulsion = 22023.324324 eV Total energy + Delta-G solvation = -3530.812186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55346 -39.04039 -38.49128 -36.20014 -33.58834 -31.73025 -31.29948 -30.18250 -28.43276 -27.96528 -27.28674 -26.46731 -24.26432 -22.60262 -21.82009 -21.41890 -20.09453 -19.29998 -18.61255 -16.86396 -16.38770 -16.24267 -15.93175 -15.70690 -15.51989 -15.19819 -14.76090 -14.48472 -14.33274 -13.53649 -13.32335 -13.19815 -12.87587 -12.78341 -12.42811 -12.32296 -12.20830 -11.81716 -11.73601 -11.57577 -11.33392 -11.04974 -10.99409 -10.86832 -10.77192 -10.65046 -10.50199 -10.35362 -10.33946 -9.77794 -9.31105 -9.08340 -8.44978 -8.29473 -7.77302 -7.65348 -5.95177 -3.97083 1.55634 1.57237 3.13215 3.36138 3.39645 3.40181 3.42970 3.88182 4.40590 4.56251 4.89958 4.95048 4.97621 5.03900 5.07532 5.08734 5.12128 5.21252 5.30621 5.36181 5.36778 5.40325 5.40806 5.57799 5.59717 5.71788 5.86139 5.98012 6.04775 6.13181 6.17336 6.30994 6.37053 6.42668 6.49891 6.53393 6.62919 6.78400 6.85226 7.06645 7.28435 7.50855 7.59952 7.62184 7.84690 7.96370 8.14649 8.49499 9.10092 9.66216 11.16142 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.004066 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.322364 B = 6884.939598 C = 7938.564531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.154 3.846 4 C -0.245 4.245 5 C -0.008 4.008 6 C -0.128 4.128 7 C 0.123 3.877 8 H 0.061 0.939 9 C -0.114 4.114 10 C -0.142 4.142 11 C 0.047 3.953 12 N -0.526 5.526 13 C 0.061 3.939 14 C 0.031 3.969 15 C -0.521 4.521 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.162 3.838 24 O -0.309 6.309 25 C 0.027 3.973 26 C -0.248 4.248 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.023 0.977 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -15.204 12.773 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.109 3.891 4 C -0.264 4.264 5 C -0.026 4.026 6 C -0.130 4.130 7 C 0.014 3.986 8 H 0.079 0.921 9 C -0.152 4.152 10 C -0.181 4.181 11 C -0.081 4.081 12 N -0.250 5.250 13 C -0.066 4.066 14 C -0.006 4.006 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.116 3.884 24 O -0.222 6.222 25 C -0.068 4.068 26 C -0.267 4.267 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.168 0.832 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.942 -15.268 12.802 20.792 hybrid contribution 0.586 0.235 -1.335 1.477 sum 6.528 -15.033 11.467 20.002 Atomic orbital electron populations 1.23038 0.78332 1.03557 1.01761 1.85998 1.21463 1.27315 1.88766 1.18653 0.91477 0.84075 0.94882 1.21222 1.00063 0.92207 1.12946 1.20890 0.93220 0.97524 0.90994 1.19029 0.93037 0.92279 1.08644 1.21086 0.93132 0.89049 0.95315 0.92067 1.22705 1.01275 0.95063 0.96204 1.22863 0.99353 0.95999 0.99846 1.22747 0.97445 0.92727 0.95202 1.63443 1.50026 1.05943 1.05547 1.22482 0.99268 1.00041 0.84857 1.19050 0.92882 0.93914 0.94766 1.21175 1.09539 1.30969 0.94284 0.92963 1.24968 0.95262 0.95862 0.98095 1.69965 1.13240 1.34124 1.35977 0.86692 0.77579 0.78180 0.85738 1.20283 1.21295 1.20321 1.18483 0.82123 0.92628 0.95123 1.86113 1.15428 1.32188 1.88521 1.23036 0.96643 0.85810 1.01350 1.20181 0.92589 0.97053 1.16900 0.92576 0.92357 0.88550 0.85516 0.83235 0.91029 0.91282 0.91867 0.91204 0.92130 0.90949 0.96124 0.92350 0.95864 0.96583 0.93028 0.88443 0.92758 0.92670 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.11 10.49 -19.41 -0.20 -4.31 16 3 C 0.15 2.18 6.68 -39.24 -0.26 1.92 16 4 C -0.25 -3.52 9.04 -39.41 -0.36 -3.87 16 5 C -0.01 -0.13 9.34 -39.62 -0.37 -0.50 16 6 C -0.13 -2.06 5.12 -104.45 -0.53 -2.59 16 7 C 0.12 2.00 2.28 -67.34 -0.15 1.84 16 8 H 0.06 1.07 7.49 -51.93 -0.39 0.68 16 9 C -0.11 -1.57 6.49 -24.45 -0.16 -1.73 16 10 C -0.14 -1.92 6.97 -24.77 -0.17 -2.09 16 11 C 0.05 0.79 6.20 -2.84 -0.02 0.77 16 12 N -0.53 -9.70 3.48 -224.74 -0.78 -10.48 16 13 C 0.06 1.32 4.47 -3.82 -0.02 1.31 16 14 C 0.03 0.82 5.00 -27.88 -0.14 0.68 16 15 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.16 2.40 6.66 -39.24 -0.26 2.13 16 24 O -0.31 -4.15 9.70 -19.44 -0.19 -4.34 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.25 -3.43 8.97 -39.29 -0.35 -3.78 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 28 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.13 1.56 6.29 -52.49 -0.33 1.23 16 31 H 0.15 2.53 7.18 -52.48 -0.38 2.15 16 32 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.11 6.91 -51.93 -0.36 0.75 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.45 7.96 -51.93 -0.41 0.04 16 39 H 0.06 1.31 8.07 -51.93 -0.42 0.89 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.44 7.14 -51.93 -0.37 0.07 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 45 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 46 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -31.96 368.32 -8.63 -40.59 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.50 Total: -0.48 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.22 Total: -17.11 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.05 Total: -36.83 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.39 Total: -8.65 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.96 -8.63 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050274303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.267 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds