Wall clock time and date at job start Tue Mar 31 2020 10:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99402 * 2 1 4 4 C 1.38736 * 120.05525 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94888 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05370 * 0.02698 * 5 4 3 7 7 C 1.50699 * 119.94318 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47079 * 89.99990 * 7 6 5 9 9 C 1.52999 * 109.46796 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46806 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46806 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46870 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99938 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99979 * 0.02562 * 14 12 11 16 16 C 1.37096 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.08002 * 119.99608 * 322.83527 * 16 14 12 18 18 C 1.38942 * 120.00077 * 142.82524 * 16 14 12 19 19 N 1.31420 * 119.99801 * 158.41024 * 18 16 14 20 20 Si 1.86800 * 120.00318 * 338.41518 * 18 16 14 21 21 H 1.48498 * 109.47231 * 95.71969 * 20 18 16 22 22 H 1.48501 * 109.46970 * 215.71589 * 20 18 16 23 23 H 1.48502 * 109.46845 * 335.71512 * 20 18 16 24 24 C 1.38271 * 120.11023 * 0.24877 * 6 5 4 25 25 C 1.38145 * 120.05267 * 359.45001 * 24 6 5 26 26 H 1.09002 * 109.47242 * 60.00521 * 1 2 3 27 27 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47782 * 300.00225 * 1 2 3 29 29 H 1.08005 * 120.02347 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.97378 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46722 * 209.99862 * 7 6 5 32 32 H 1.09000 * 109.46879 * 329.99838 * 7 6 5 33 33 H 1.08998 * 109.46798 * 299.99536 * 8 7 6 34 34 H 1.09004 * 109.47229 * 59.99683 * 8 7 6 35 35 H 1.08991 * 109.47387 * 299.99853 * 9 8 7 36 36 H 1.09004 * 109.47289 * 59.99966 * 9 8 7 37 37 H 1.08998 * 109.47111 * 299.99981 * 10 9 8 38 38 H 1.09000 * 109.47065 * 60.00599 * 10 9 8 39 39 H 1.09003 * 109.47739 * 299.99975 * 11 10 9 40 40 H 1.09004 * 109.47289 * 60.00357 * 11 10 9 41 41 H 1.08996 * 109.47474 * 85.12671 * 15 14 12 42 42 H 1.09003 * 109.46806 * 205.13295 * 15 14 12 43 43 H 1.09004 * 109.47186 * 325.12617 * 15 14 12 44 44 H 0.96992 * 119.99817 * 180.02562 * 19 18 16 45 45 H 1.08000 * 119.96908 * 179.70578 * 24 6 5 46 46 H 1.08008 * 120.02392 * 180.25016 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2850 0.0005 5 6 4.0559 2.5171 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 4.2178 5.4741 -1.4393 9 6 4.9118 6.8377 -1.4381 10 6 5.1444 7.2928 -2.8802 11 6 5.8389 8.6561 -2.8789 12 6 6.0686 9.1041 -4.2994 13 8 5.7114 8.4023 -5.2219 14 7 6.6699 10.2851 -4.5447 15 6 7.1008 11.1330 -3.4304 16 6 6.8784 10.6930 -5.8368 17 1 7.1455 9.9711 -6.5945 18 6 6.7459 12.0349 -6.1717 19 7 7.3329 12.5041 -7.2499 20 14 5.7336 13.1722 -5.0895 21 1 6.6298 13.8791 -4.1396 22 1 5.0292 14.1663 -5.9386 23 1 4.7369 12.3752 -4.3300 24 6 1.9208 3.6048 0.0069 25 6 1.2914 2.3751 0.0001 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 4.0208 0.3801 0.0005 30 1 5.1343 2.5752 0.0011 31 1 3.3575 5.7461 0.5169 32 1 4.9435 4.9380 0.5169 33 1 4.8461 4.7468 -1.9534 34 1 3.2600 5.5547 -1.9535 35 1 4.2833 7.5648 -0.9241 36 1 5.8695 6.7575 -0.9238 37 1 5.7732 6.5656 -3.3938 38 1 4.1868 7.3730 -3.3948 39 1 5.2105 9.3837 -2.3652 40 1 6.7965 8.5755 -2.3645 41 1 8.0900 10.8197 -3.0967 42 1 7.1401 12.1718 -3.7584 43 1 6.3928 11.0385 -2.6070 44 1 7.2407 13.4410 -7.4834 45 1 1.3339 4.5114 0.0121 46 1 0.2127 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066644051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:33 Heat of formation + Delta-G solvation = -61.053203 kcal Electronic energy + Delta-G solvation = -23516.296451 eV Core-core repulsion = 19984.955405 eV Total energy + Delta-G solvation = -3531.341045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.43144 -38.73989 -38.15788 -35.82129 -34.71370 -32.80236 -31.96331 -31.35467 -29.85199 -27.95157 -26.63598 -26.19634 -24.57515 -22.96861 -22.56047 -20.94828 -20.84799 -18.56668 -18.45832 -17.01711 -16.63429 -16.07960 -16.01168 -15.73769 -15.63287 -15.32637 -14.68639 -14.56210 -14.04200 -13.88502 -13.75580 -13.42718 -13.19274 -12.73235 -12.63796 -12.58903 -12.36026 -12.28909 -12.07734 -11.73118 -11.66785 -11.52634 -11.22457 -11.10566 -10.81477 -10.78081 -10.67689 -10.61077 -10.30792 -10.28824 -9.89921 -9.26903 -9.03952 -8.43539 -8.31612 -7.69320 -6.36197 -3.92595 1.07368 1.15412 2.94237 3.04257 3.23107 3.27670 3.47783 3.80955 4.17074 4.44129 4.46934 4.57249 4.65260 4.70998 4.75451 4.91940 4.97577 5.05783 5.08954 5.13723 5.15539 5.23579 5.34989 5.43819 5.56756 5.60507 5.67053 5.76310 5.79092 5.84975 5.92686 5.98835 6.05224 6.05961 6.09766 6.14907 6.23939 6.28397 6.31952 6.43546 6.50248 6.57650 6.70539 7.07672 7.59057 8.33117 8.56433 9.01849 9.36673 9.83913 10.76292 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.001887 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.784768 B =14837.328182 C =14896.443954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.117 3.883 4 C -0.149 4.149 5 C -0.078 4.078 6 C -0.113 4.113 7 C -0.077 4.077 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.101 4.101 11 C -0.136 4.136 12 C 0.462 3.538 13 O -0.567 6.567 14 N -0.475 5.475 15 C 0.065 3.935 16 C -0.316 4.316 17 H 0.104 0.896 18 C 0.056 3.944 19 N -0.867 5.867 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.078 4.078 25 C -0.206 4.206 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.273 0.727 45 H 0.124 0.876 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 -18.186 20.578 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.168 4.168 5 C -0.096 4.096 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.151 4.151 9 C -0.157 4.157 10 C -0.139 4.139 11 C -0.176 4.176 12 C 0.251 3.749 13 O -0.449 6.449 14 N -0.198 5.198 15 C -0.078 4.078 16 C -0.443 4.443 17 H 0.122 0.878 18 C -0.149 4.149 19 N -0.503 5.503 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.096 4.096 25 C -0.224 4.224 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.142 0.858 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.767 -18.561 19.963 29.308 hybrid contribution -0.754 1.036 0.491 1.372 sum -11.521 -17.525 20.454 29.295 Atomic orbital electron populations 1.23045 0.78444 1.03885 1.01377 1.86059 1.21355 1.27091 1.88887 1.19038 0.92423 0.84099 0.97227 1.20431 0.91351 0.98709 1.06314 1.20899 0.99941 0.90976 0.97784 1.19900 0.93542 0.95560 1.02345 1.20603 1.00222 0.92750 0.97901 1.21590 1.01164 0.97050 0.95305 1.21645 1.00339 0.96203 0.97494 1.21285 1.01426 0.95796 0.95343 1.21643 1.01515 0.98143 0.96326 1.20381 0.80350 0.83868 0.90342 1.90543 1.53099 1.54799 1.46497 1.43729 1.52205 1.17772 1.06070 1.21972 0.99079 0.96441 0.90342 1.19065 1.46376 0.93940 0.84919 0.87830 1.25380 0.96050 0.97163 0.96291 1.69764 1.39072 1.15232 1.26272 0.86903 0.81401 0.80550 0.80227 1.20352 1.21527 1.18988 1.20867 0.94099 0.97008 0.97635 1.21222 0.99944 0.92410 1.08866 0.92603 0.88287 0.92716 0.85305 0.85265 0.91148 0.91041 0.91739 0.91846 0.92175 0.92097 0.91461 0.91513 0.90424 0.90405 0.93120 0.91779 0.92746 0.91682 0.85760 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.02 10.50 -19.42 -0.20 -3.22 16 3 C 0.12 1.16 6.69 -39.22 -0.26 0.90 16 4 C -0.15 -1.44 9.99 -39.43 -0.39 -1.83 16 5 C -0.08 -0.72 9.69 -39.61 -0.38 -1.10 16 6 C -0.11 -1.06 5.14 -104.60 -0.54 -1.60 16 7 C -0.08 -0.66 5.34 -27.88 -0.15 -0.81 16 8 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 9 C -0.12 -1.32 5.21 -26.73 -0.14 -1.46 16 10 C -0.10 -1.53 4.50 -26.73 -0.12 -1.65 16 11 C -0.14 -2.28 4.32 -27.88 -0.12 -2.41 16 12 C 0.46 10.91 7.63 -10.98 -0.08 10.83 16 13 O -0.57 -15.67 15.85 5.55 0.09 -15.58 16 14 N -0.48 -11.80 2.59 -122.19 -0.32 -12.12 16 15 C 0.07 1.30 8.78 59.85 0.53 1.82 16 16 C -0.32 -9.21 9.37 -14.94 -0.14 -9.35 16 17 H 0.10 3.39 7.90 -52.49 -0.41 2.98 16 18 C 0.06 1.59 5.29 -17.47 -0.09 1.50 16 19 N -0.87 -25.55 13.96 55.50 0.77 -24.77 16 20 Si 0.88 20.89 24.96 -169.99 -4.24 16.65 16 21 H -0.28 -6.05 6.69 56.52 0.38 -5.67 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.08 -0.71 9.69 -39.60 -0.38 -1.10 16 25 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 26 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.08 1.17 7.41 -51.93 -0.38 0.79 16 40 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.35 3.42 -51.93 -0.18 1.17 16 43 H 0.05 0.89 6.64 -51.93 -0.34 0.54 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.13 0.87 6.30 -52.48 -0.33 0.54 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -34.19 373.26 -7.57 -41.76 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.51 Total: 0.26 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -1.78 Total: -8.60 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.46 Total: -36.89 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.12 Total: -18.81 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.24 Total: 16.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.19 -7.57 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.289 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds