Wall clock time and date at job start Tue Mar 31 2020 10:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99402 * 2 1 4 4 C 1.38736 * 120.05525 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94888 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05370 * 0.02698 * 5 4 3 7 7 C 1.50699 * 119.94318 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47079 * 89.99990 * 7 6 5 9 9 C 1.52999 * 109.46796 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46806 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.46806 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46870 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99938 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99979 * 0.02562 * 14 12 11 16 16 C 1.37096 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.08002 * 119.99608 * 322.83527 * 16 14 12 18 18 C 1.38942 * 120.00077 * 142.82524 * 16 14 12 19 19 N 1.31420 * 119.99801 * 158.41024 * 18 16 14 20 20 Si 1.86800 * 120.00318 * 338.41518 * 18 16 14 21 21 H 1.48498 * 109.47231 * 95.71969 * 20 18 16 22 22 H 1.48501 * 109.46970 * 215.71589 * 20 18 16 23 23 H 1.48502 * 109.46845 * 335.71512 * 20 18 16 24 24 C 1.38271 * 120.11023 * 0.24877 * 6 5 4 25 25 C 1.38145 * 120.05267 * 359.45001 * 24 6 5 26 26 H 1.09002 * 109.47242 * 60.00521 * 1 2 3 27 27 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47782 * 300.00225 * 1 2 3 29 29 H 1.08005 * 120.02347 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.97378 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46722 * 209.99862 * 7 6 5 32 32 H 1.09000 * 109.46879 * 329.99838 * 7 6 5 33 33 H 1.08998 * 109.46798 * 299.99536 * 8 7 6 34 34 H 1.09004 * 109.47229 * 59.99683 * 8 7 6 35 35 H 1.08991 * 109.47387 * 299.99853 * 9 8 7 36 36 H 1.09004 * 109.47289 * 59.99966 * 9 8 7 37 37 H 1.08998 * 109.47111 * 299.99981 * 10 9 8 38 38 H 1.09000 * 109.47065 * 60.00599 * 10 9 8 39 39 H 1.09003 * 109.47739 * 299.99975 * 11 10 9 40 40 H 1.09004 * 109.47289 * 60.00357 * 11 10 9 41 41 H 1.08996 * 109.47474 * 85.12671 * 15 14 12 42 42 H 1.09003 * 109.46806 * 205.13295 * 15 14 12 43 43 H 1.09004 * 109.47186 * 325.12617 * 15 14 12 44 44 H 0.96992 * 119.99817 * 180.02562 * 19 18 16 45 45 H 1.08000 * 119.96908 * 179.70578 * 24 6 5 46 46 H 1.08008 * 120.02392 * 180.25016 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2850 0.0005 5 6 4.0559 2.5171 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 4.2178 5.4741 -1.4393 9 6 4.9118 6.8377 -1.4381 10 6 5.1444 7.2928 -2.8802 11 6 5.8389 8.6561 -2.8789 12 6 6.0686 9.1041 -4.2994 13 8 5.7114 8.4023 -5.2219 14 7 6.6699 10.2851 -4.5447 15 6 7.1008 11.1330 -3.4304 16 6 6.8784 10.6930 -5.8368 17 1 7.1455 9.9711 -6.5945 18 6 6.7459 12.0349 -6.1717 19 7 7.3329 12.5041 -7.2499 20 14 5.7336 13.1722 -5.0895 21 1 6.6298 13.8791 -4.1396 22 1 5.0292 14.1663 -5.9386 23 1 4.7369 12.3752 -4.3300 24 6 1.9208 3.6048 0.0069 25 6 1.2914 2.3751 0.0001 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 4.0208 0.3801 0.0005 30 1 5.1343 2.5752 0.0011 31 1 3.3575 5.7461 0.5169 32 1 4.9435 4.9380 0.5169 33 1 4.8461 4.7468 -1.9534 34 1 3.2600 5.5547 -1.9535 35 1 4.2833 7.5648 -0.9241 36 1 5.8695 6.7575 -0.9238 37 1 5.7732 6.5656 -3.3938 38 1 4.1868 7.3730 -3.3948 39 1 5.2105 9.3837 -2.3652 40 1 6.7965 8.5755 -2.3645 41 1 8.0900 10.8197 -3.0967 42 1 7.1401 12.1718 -3.7584 43 1 6.3928 11.0385 -2.6070 44 1 7.2407 13.4410 -7.4834 45 1 1.3339 4.5114 0.0121 46 1 0.2127 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066644051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:32 Heat of formation + Delta-G solvation = -81.987798 kcal Electronic energy + Delta-G solvation = -23517.204243 eV Core-core repulsion = 19984.955405 eV Total energy + Delta-G solvation = -3532.248837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06619 -40.54432 -38.82252 -37.00902 -36.41508 -34.20853 -33.65926 -32.00936 -30.80843 -28.69296 -28.11505 -27.48227 -26.09048 -23.79637 -23.47647 -21.91248 -21.61374 -20.34289 -19.08142 -19.04429 -17.81799 -17.33267 -17.21985 -16.80074 -16.64259 -16.29269 -15.93481 -15.56794 -15.23386 -14.91277 -14.61992 -14.47894 -14.37861 -14.24392 -14.12951 -13.78767 -13.48798 -13.40700 -13.13722 -12.83109 -12.72049 -12.59605 -12.52175 -12.22310 -12.01266 -11.84546 -11.81704 -11.70555 -11.57835 -11.48897 -11.27195 -11.05474 -10.33339 -9.93779 -9.69207 -8.99975 -8.52003 -6.14775 0.40712 0.46741 1.19882 1.33069 1.45982 1.99224 2.18081 2.39720 2.76485 2.81587 2.96852 3.82533 3.86437 3.95464 3.98376 4.10554 4.18806 4.25205 4.32629 4.36765 4.37876 4.42622 4.48474 4.53336 4.60971 4.67289 4.69529 4.75164 4.82925 4.85558 4.86976 4.98480 5.07033 5.09055 5.11163 5.19484 5.35939 5.41342 5.43597 5.49843 5.54453 5.61544 5.77660 5.87517 6.02440 6.45943 6.57869 6.95406 7.32256 7.91195 8.65870 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.034147 B = 0.001887 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.784768 B =14837.328182 C =14896.443954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.102 3.898 4 C -0.166 4.166 5 C -0.085 4.085 6 C -0.125 4.125 7 C -0.069 4.069 8 C -0.111 4.111 9 C -0.107 4.107 10 C -0.098 4.098 11 C -0.122 4.122 12 C 0.449 3.551 13 O -0.624 6.624 14 N -0.489 5.489 15 C 0.058 3.942 16 C -0.340 4.340 17 H 0.037 0.963 18 C 0.005 3.995 19 N -0.915 5.915 20 Si 0.960 3.040 21 H -0.236 1.236 22 H -0.291 1.291 23 H -0.257 1.257 24 C -0.087 4.087 25 C -0.212 4.212 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.280 0.720 45 H 0.139 0.861 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.769 -16.962 24.653 32.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.057 3.943 4 C -0.185 4.185 5 C -0.103 4.103 6 C -0.125 4.125 7 C -0.106 4.106 8 C -0.149 4.149 9 C -0.144 4.144 10 C -0.136 4.136 11 C -0.162 4.162 12 C 0.240 3.760 13 O -0.510 6.510 14 N -0.212 5.212 15 C -0.084 4.084 16 C -0.468 4.468 17 H 0.055 0.945 18 C -0.196 4.196 19 N -0.552 5.552 20 Si 0.783 3.217 21 H -0.161 1.161 22 H -0.219 1.219 23 H -0.180 1.180 24 C -0.105 4.105 25 C -0.231 4.231 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.161 0.839 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.089 0.911 45 H 0.157 0.843 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.797 -17.335 24.075 31.926 hybrid contribution -0.403 0.528 -0.890 1.111 sum -12.200 -16.807 23.185 31.127 Atomic orbital electron populations 1.23303 0.76672 1.05443 1.02082 1.86031 1.23314 1.27122 1.88913 1.19273 0.92827 0.84666 0.97555 1.20660 0.91724 0.99305 1.06806 1.21127 1.00779 0.90877 0.97499 1.20095 0.93853 0.96029 1.02517 1.20540 1.01015 0.92424 0.96639 1.21532 1.00320 0.96594 0.96428 1.21553 1.01779 0.96696 0.94383 1.21266 0.99609 0.94775 0.97996 1.21679 1.03970 0.99207 0.91317 1.21716 0.78630 0.82710 0.92926 1.90510 1.55027 1.56295 1.49141 1.43915 1.52705 1.18941 1.05601 1.22250 1.01800 0.94814 0.89556 1.18673 1.48182 0.93433 0.86541 0.94458 1.26277 0.96354 0.98712 0.98307 1.69889 1.40317 1.16244 1.28778 0.85676 0.79582 0.77828 0.78620 1.16108 1.21863 1.18038 1.21138 0.94369 0.97630 0.97345 1.21461 1.00931 0.92163 1.08512 0.92128 0.86428 0.91707 0.84799 0.83924 0.89917 0.89860 0.92859 0.92918 0.90302 0.90246 0.93727 0.93767 0.87211 0.87121 0.90675 0.92827 0.88111 0.91056 0.84322 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.27 10.50 -92.40 -0.97 -7.24 16 3 C 0.10 1.98 6.69 22.51 0.15 2.13 16 4 C -0.17 -3.16 9.99 22.37 0.22 -2.93 16 5 C -0.08 -1.48 9.69 22.25 0.22 -1.26 16 6 C -0.12 -2.14 5.14 -19.85 -0.10 -2.24 16 7 C -0.07 -0.99 5.34 29.85 0.16 -0.83 16 8 C -0.11 -2.04 5.20 30.60 0.16 -1.88 16 9 C -0.11 -1.98 5.21 30.59 0.16 -1.82 16 10 C -0.10 -2.83 4.50 30.59 0.14 -2.69 16 11 C -0.12 -3.70 4.32 29.85 0.13 -3.57 16 12 C 0.45 21.12 7.63 87.66 0.67 21.79 16 13 O -0.62 -36.05 15.85 -3.05 -0.05 -36.10 16 14 N -0.49 -24.03 2.59 -658.88 -1.70 -25.73 16 15 C 0.06 2.06 8.78 127.77 1.12 3.18 16 16 C -0.34 -20.66 9.37 84.04 0.79 -19.88 16 17 H 0.04 2.68 7.90 -2.91 -0.02 2.65 16 18 C 0.00 0.29 5.29 84.92 0.45 0.74 16 19 N -0.91 -55.63 13.96 21.66 0.30 -55.33 16 20 Si 0.96 42.11 24.96 68.60 1.71 43.82 16 21 H -0.24 -8.88 6.69 99.48 0.67 -8.21 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 C -0.09 -1.45 9.69 22.26 0.22 -1.24 16 25 C -0.21 -3.60 9.04 22.36 0.20 -3.40 16 26 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 27 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 38 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.11 2.70 7.41 -2.39 -0.02 2.68 16 40 H 0.11 2.70 8.11 -2.39 -0.02 2.68 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.05 2.03 3.42 -2.39 -0.01 2.02 16 43 H 0.10 2.66 6.64 -2.38 -0.02 2.65 16 44 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 46 H 0.14 1.78 6.30 -2.91 -0.02 1.76 16 Total: -1.00 -81.14 373.26 5.99 -75.15 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.91 Total: 18.02 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.79 Total: -12.59 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.40 Total: -81.06 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.02 Total: -43.34 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.71 Total: 43.82 kcal Total: -81.14 5.99 -75.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.840 kcal (2) G-P(sol) polarization free energy of solvation -81.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds