Wall clock time and date at job start Tue Mar 31 2020 09:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47329 * 2 1 4 4 C 1.37098 * 119.99902 * 264.76380 * 3 2 1 5 5 H 1.08000 * 119.99340 * 138.85170 * 4 3 2 6 6 C 1.38948 * 120.00149 * 318.85447 * 4 3 2 7 7 N 1.31408 * 120.00157 * 341.83076 * 6 4 3 8 8 Si 1.86804 * 119.99978 * 161.83364 * 6 4 3 9 9 H 1.48496 * 109.47255 * 59.99811 * 8 6 4 10 10 H 1.48496 * 109.46852 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46889 * 299.99710 * 8 6 4 12 12 C 1.34778 * 119.99991 * 84.76877 * 3 2 1 13 13 O 1.21296 * 119.99868 * 179.97438 * 12 3 2 14 14 C 1.50695 * 119.99938 * 359.97438 * 12 3 2 15 15 C 1.53010 * 109.47054 * 180.02562 * 14 12 3 16 16 C 1.53000 * 109.46975 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46629 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46935 * 179.97438 * 17 16 15 19 19 C 1.38267 * 119.94172 * 269.73025 * 18 17 16 20 20 C 1.38151 * 120.04989 * 179.72163 * 19 18 17 21 21 C 1.38731 * 119.94447 * 0.57156 * 20 19 18 22 22 O 1.35903 * 120.05403 * 179.68011 * 21 20 19 23 23 C 1.42902 * 117.00044 * 0.02562 * 22 21 20 24 24 C 1.38732 * 119.88839 * 359.70320 * 21 20 19 25 25 C 1.38139 * 119.94494 * 359.97438 * 24 21 20 26 26 H 1.08992 * 109.47749 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47154 * 300.00573 * 1 2 3 28 28 H 1.09000 * 109.47006 * 60.00140 * 1 2 3 29 29 H 1.08999 * 109.47512 * 239.99785 * 2 1 3 30 30 H 1.09000 * 109.47006 * 119.99859 * 2 1 3 31 31 H 0.97003 * 120.00637 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47438 * 60.00408 * 14 12 3 33 33 H 1.08999 * 109.47149 * 299.99614 * 14 12 3 34 34 H 1.08994 * 109.46777 * 59.99866 * 15 14 12 35 35 H 1.08999 * 109.46715 * 299.99742 * 15 14 12 36 36 H 1.09002 * 109.47025 * 60.00457 * 16 15 14 37 37 H 1.08993 * 109.47277 * 299.99951 * 16 15 14 38 38 H 1.09002 * 109.46887 * 60.00565 * 17 16 15 39 39 H 1.08993 * 109.47408 * 300.00063 * 17 16 15 40 40 H 1.07996 * 119.97798 * 359.97068 * 19 18 17 41 41 H 1.07999 * 120.02649 * 180.24773 * 20 19 18 42 42 H 1.08998 * 109.46812 * 60.00327 * 23 22 21 43 43 H 1.09001 * 109.46948 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47328 * 300.00204 * 23 22 21 45 45 H 1.08003 * 120.02722 * 179.97438 * 24 21 20 46 46 H 1.08001 * 119.97553 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3490 1.9913 -1.1824 5 1 2.0744 3.0217 -1.3535 6 6 3.0373 1.2841 -2.1605 7 7 3.6791 0.1816 -1.8450 8 14 3.0503 1.9004 -3.9238 9 1 3.6540 3.2563 -3.9699 10 1 3.8494 0.9744 -4.7659 11 1 1.6581 1.9606 -4.4374 12 6 2.1426 2.0520 1.1624 13 8 2.5474 3.1954 1.1624 14 6 1.7787 1.3815 2.4619 15 6 2.0097 2.3544 3.6200 16 6 1.6396 1.6738 4.9394 17 6 1.8713 2.6466 6.0974 18 6 1.5061 1.9765 7.3970 19 6 0.2160 2.0732 7.8847 20 6 -0.1227 1.4550 9.0729 21 6 0.8360 0.7467 9.7827 22 8 0.5070 0.1431 10.9550 23 6 -0.8452 0.2784 11.3973 24 6 2.1312 0.6559 9.2940 25 6 2.4631 1.2703 8.1021 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 4.1600 -0.3120 -2.5277 32 1 2.4000 0.4968 2.6008 33 1 0.7291 1.0884 2.4381 34 1 1.3881 3.2389 3.4809 35 1 3.0592 2.6480 3.6440 36 1 2.2610 0.7892 5.0787 37 1 0.5902 1.3806 4.9151 38 1 1.2502 3.5315 5.9583 39 1 2.9208 2.9394 6.1216 40 1 -0.5287 2.6291 7.3344 41 1 -1.1315 1.5275 9.4514 42 1 -1.5158 -0.1468 10.6506 43 1 -0.9728 -0.2494 12.3424 44 1 -1.0782 1.3341 11.5358 45 1 2.8794 0.1054 9.8450 46 1 3.4712 1.1996 7.7210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:59 Heat of formation + Delta-G solvation = -86.137106 kcal Electronic energy + Delta-G solvation = -24002.456897 eV Core-core repulsion = 20470.028132 eV Total energy + Delta-G solvation = -3532.428765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -41.05439 -40.44798 -38.78484 -36.99811 -36.03725 -34.05315 -32.70358 -31.96718 -31.11382 -29.65857 -28.15990 -26.94918 -25.10729 -23.85442 -23.53960 -22.41964 -21.59631 -20.39430 -19.05382 -18.67850 -17.60709 -17.28147 -16.96770 -16.61333 -16.45101 -16.33195 -15.94031 -15.44046 -15.18247 -14.73611 -14.60408 -14.48983 -14.35031 -13.92407 -13.72862 -13.63912 -13.37602 -13.17616 -13.00958 -12.84184 -12.74645 -12.65555 -12.37828 -12.17220 -12.14025 -11.98883 -11.82045 -11.75202 -11.64664 -11.61689 -11.34250 -10.85948 -10.27706 -9.92060 -9.36701 -8.98942 -8.32108 -6.08650 0.42392 0.47980 1.39799 1.40379 1.50923 2.11940 2.31375 2.41775 2.80898 3.03095 3.14644 3.84962 3.87884 3.99084 4.08117 4.12410 4.20267 4.29366 4.33340 4.40277 4.43418 4.49907 4.58361 4.61635 4.67409 4.73632 4.74263 4.80695 4.82566 4.90691 4.97432 5.02094 5.09978 5.15510 5.25635 5.32547 5.36611 5.41073 5.44351 5.46995 5.55287 5.57722 5.78769 5.87505 6.26043 6.48271 6.59724 7.22307 7.52104 8.13625 8.71415 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.033404 B = 0.002129 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.015096 B =13151.437385 C =13374.903221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.459 5.459 4 C -0.342 4.342 5 H 0.058 0.942 6 C 0.001 3.999 7 N -0.893 5.893 8 Si 0.981 3.019 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.263 1.263 12 C 0.444 3.556 13 O -0.633 6.633 14 C -0.122 4.122 15 C -0.092 4.092 16 C -0.100 4.100 17 C -0.074 4.074 18 C -0.121 4.121 19 C -0.084 4.084 20 C -0.209 4.209 21 C 0.105 3.895 22 O -0.339 6.339 23 C 0.019 3.981 24 C -0.163 4.163 25 C -0.085 4.085 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.272 0.728 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.063 0.937 45 H 0.135 0.865 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -3.889 22.406 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.178 5.178 4 C -0.470 4.470 5 H 0.076 0.924 6 C -0.201 4.201 7 N -0.531 5.531 8 Si 0.805 3.195 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.235 3.765 13 O -0.520 6.520 14 C -0.162 4.162 15 C -0.130 4.130 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.102 4.102 20 C -0.227 4.227 21 C 0.060 3.940 22 O -0.253 6.253 23 C -0.075 4.075 24 C -0.182 4.182 25 C -0.103 4.103 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.153 0.847 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.396 -3.631 22.426 24.584 hybrid contribution 0.160 0.427 -1.125 1.214 sum -9.236 -3.205 21.301 23.437 Atomic orbital electron populations 1.22108 0.95245 1.02491 1.01335 1.21543 0.94029 0.83547 1.02987 1.43801 1.56329 1.13029 1.04686 1.19290 1.36483 0.98016 0.93258 0.92380 1.26170 0.93229 0.96695 1.04010 1.69987 1.29539 1.18248 1.35289 0.85194 0.78877 0.77974 0.77477 1.20431 1.19638 1.18736 1.21559 0.80664 0.87488 0.86833 1.90457 1.52301 1.21212 1.88012 1.21620 1.03617 0.99681 0.91252 1.21226 1.01143 0.97578 0.93098 1.21494 1.02213 0.98203 0.91790 1.20519 1.02333 0.97817 0.90443 1.19953 0.94190 1.00629 0.97363 1.21103 0.96105 0.97967 0.95059 1.21446 1.00203 1.03108 0.97953 1.19239 0.94410 0.94013 0.86378 1.86034 1.32281 1.71078 1.35888 1.23312 0.79797 1.02999 1.01434 1.20622 0.94748 1.04710 0.98119 1.21086 1.00080 0.95610 0.93494 0.89683 0.92422 0.94222 0.90533 0.91475 0.91810 0.89095 0.88090 0.92838 0.93510 0.91474 0.90964 0.90704 0.91034 0.84369 0.83649 0.91900 0.86423 0.91816 0.84667 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 10.15 71.98 0.73 -4.50 16 2 C 0.10 4.39 5.41 86.38 0.47 4.85 16 3 N -0.46 -23.96 2.50 -635.55 -1.59 -25.55 16 4 C -0.34 -19.87 8.84 84.04 0.74 -19.13 16 5 H 0.06 3.60 7.82 -2.91 -0.02 3.58 16 6 C 0.00 0.07 4.95 84.93 0.42 0.49 16 7 N -0.89 -49.28 11.61 21.66 0.25 -49.03 16 8 Si 0.98 43.23 29.59 68.60 2.03 45.26 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 12 C 0.44 22.36 7.59 87.66 0.67 23.03 16 13 O -0.63 -37.28 15.89 -3.08 -0.05 -37.33 16 14 C -0.12 -4.35 4.31 29.85 0.13 -4.22 16 15 C -0.09 -2.93 4.50 30.60 0.14 -2.80 16 16 C -0.10 -2.30 5.20 30.59 0.16 -2.14 16 17 C -0.07 -1.54 5.34 29.85 0.16 -1.38 16 18 C -0.12 -2.44 5.14 -19.85 -0.10 -2.55 16 19 C -0.08 -1.56 9.69 22.26 0.22 -1.34 16 20 C -0.21 -3.67 9.04 22.37 0.20 -3.47 16 21 C 0.10 2.09 6.69 22.51 0.15 2.24 16 22 O -0.34 -6.30 10.50 -92.45 -0.97 -7.27 16 23 C 0.02 0.19 9.81 113.37 1.11 1.30 16 24 C -0.16 -3.29 9.99 22.36 0.22 -3.06 16 25 C -0.08 -1.68 9.69 22.25 0.22 -1.46 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 1.78 6.60 -2.39 -0.02 1.77 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 3.69 5.76 -2.39 -0.01 3.67 16 30 H 0.07 2.57 6.66 -2.39 -0.02 2.55 16 31 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.09 3.02 7.41 -2.39 -0.02 3.01 16 33 H 0.10 3.08 6.54 -2.39 -0.02 3.06 16 34 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.05 1.65 8.10 -2.39 -0.02 1.64 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 39 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 40 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 42 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 43 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 45 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 46 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -72.74 375.71 6.25 -66.49 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.95 Total: 21.56 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 5.63 Total: -14.13 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.34 Total: -74.58 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -1.02 Total: -44.60 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.74 6.25 -66.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.646 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds