Wall clock time and date at job start Tue Mar 31 2020 09:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46478 * 2 1 4 4 C 1.37098 * 119.99899 * 263.54931 * 3 2 1 5 5 H 1.08000 * 119.99771 * 188.38863 * 4 3 2 6 6 C 1.38951 * 120.00173 * 8.39982 * 4 3 2 7 7 N 1.31417 * 119.99833 * 25.15993 * 6 4 3 8 8 Si 1.86801 * 120.00109 * 205.16842 * 6 4 3 9 9 H 1.48500 * 109.47170 * 84.98527 * 8 6 4 10 10 H 1.48500 * 109.46871 * 204.98182 * 8 6 4 11 11 H 1.48499 * 109.46758 * 324.98503 * 8 6 4 12 12 C 1.34773 * 120.00062 * 83.56107 * 3 2 1 13 13 O 1.21295 * 119.99884 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00283 * 359.97438 * 12 3 2 15 15 C 1.52998 * 109.47456 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47118 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46861 * 179.97438 * 16 15 14 18 18 O 1.42907 * 109.46813 * 179.97438 * 17 16 15 19 19 C 1.35898 * 116.99746 * 180.02562 * 18 17 16 20 20 C 1.38754 * 120.05845 * 0.02729 * 19 18 17 21 21 C 1.38119 * 119.94526 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.05806 * 359.74388 * 21 20 19 23 23 C 1.38251 * 120.10516 * 0.50845 * 22 21 20 24 24 C 1.50710 * 119.96770 * 179.76930 * 23 22 21 25 25 C 1.38162 * 120.05870 * 359.49036 * 23 22 21 26 26 H 1.09002 * 109.47243 * 299.99687 * 1 2 3 27 27 H 1.09004 * 109.47535 * 60.00513 * 1 2 3 28 28 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47243 * 240.00313 * 2 1 3 30 30 H 1.09001 * 109.46836 * 119.99695 * 2 1 3 31 31 H 0.96998 * 119.99692 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47083 * 60.00023 * 14 12 3 33 33 H 1.09004 * 109.46879 * 300.00767 * 14 12 3 34 34 H 1.09001 * 109.47456 * 59.99639 * 15 14 12 35 35 H 1.09004 * 109.46535 * 299.99612 * 15 14 12 36 36 H 1.08997 * 109.47287 * 59.99988 * 16 15 14 37 37 H 1.08997 * 109.46989 * 299.99603 * 16 15 14 38 38 H 1.08997 * 109.46810 * 60.00149 * 17 16 15 39 39 H 1.08997 * 109.47365 * 299.99826 * 17 16 15 40 40 H 1.07998 * 120.02691 * 359.95212 * 20 19 18 41 41 H 1.08000 * 119.97276 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.95067 * 180.27896 * 22 21 20 43 43 H 1.09001 * 109.46702 * 269.72284 * 24 23 22 44 44 H 1.08998 * 109.47044 * 29.72048 * 24 23 22 45 45 H 1.08998 * 109.46836 * 149.72382 * 24 23 22 46 46 H 1.07995 * 120.02750 * 180.22970 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8578 2.9479 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1282 0.4788 -2.4732 8 14 3.1405 1.7446 -3.8944 9 1 4.3646 0.9040 -3.8873 10 1 2.3539 1.4631 -5.1221 11 1 3.5247 3.1789 -3.8706 12 6 2.1193 2.0603 1.1598 13 8 2.5240 3.2037 1.1598 14 6 1.7297 1.3989 2.4567 15 6 1.9376 2.3799 3.6122 16 6 1.5426 1.7081 4.9288 17 6 1.7511 2.6890 6.0844 18 8 1.3816 2.0618 7.3141 19 6 1.5073 2.8024 8.4466 20 6 1.9761 4.1064 8.3757 21 6 2.1024 4.8573 9.5281 22 6 1.7571 4.3122 10.7512 23 6 1.2947 3.0114 10.8251 24 6 0.9242 2.4188 12.1603 25 6 1.1665 2.2562 9.6752 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.9425 0.0385 -3.3173 32 1 2.3483 0.5153 2.6140 33 1 0.6809 1.1052 2.4139 34 1 1.3188 3.2633 3.4546 35 1 2.9864 2.6738 3.6550 36 1 2.1618 0.8250 5.0862 37 1 0.4940 1.4139 4.8863 38 1 1.1322 3.5724 5.9272 39 1 2.7999 2.9830 6.1268 40 1 2.2423 4.5338 7.4203 41 1 2.4668 5.8724 9.4734 42 1 1.8523 4.9024 11.6506 43 1 1.7977 1.9358 12.5983 44 1 0.5750 3.2095 12.8244 45 1 0.1321 1.6827 12.0238 46 1 0.8018 1.2414 9.7331 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:15 Heat of formation + Delta-G solvation = -59.576417 kcal Electronic energy + Delta-G solvation = -23915.121478 eV Core-core repulsion = 20383.844471 eV Total energy + Delta-G solvation = -3531.277007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.38 seconds Orbital eigenvalues (eV) -40.30439 -38.66707 -37.91460 -35.33865 -34.37774 -32.74011 -31.84814 -30.69471 -29.45262 -28.93182 -27.23444 -25.38880 -23.78211 -22.76547 -22.16974 -21.29953 -20.80157 -18.65461 -17.84530 -16.81262 -16.40062 -16.25401 -16.13635 -15.88650 -14.96958 -14.53137 -14.50360 -14.14914 -14.02386 -13.68332 -13.49405 -13.41350 -12.74760 -12.73500 -12.47510 -12.42317 -12.03985 -11.88418 -11.80400 -11.62777 -11.42605 -11.18490 -11.10968 -11.00989 -10.83979 -10.76949 -10.65001 -10.39050 -10.29310 -10.07816 -9.79386 -9.01301 -8.88174 -8.34981 -8.32407 -7.73868 -6.34625 -3.75595 1.09857 1.25924 3.04577 3.16554 3.26581 3.31305 3.54475 3.92161 4.14289 4.55787 4.59086 4.79215 4.87551 4.89035 4.95242 5.04325 5.08892 5.11218 5.21121 5.28058 5.29659 5.44622 5.50340 5.51009 5.62484 5.72723 5.84695 5.94577 6.00098 6.02433 6.06213 6.14440 6.23668 6.31789 6.35715 6.47276 6.58654 6.60883 6.66180 6.68534 6.78691 7.27640 7.30514 7.48425 7.74704 8.12106 8.53490 9.21062 9.48180 10.03748 10.66222 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.039023 B = 0.002023 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.359441 B =13837.867759 C =14406.166007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 N -0.443 5.443 4 C -0.307 4.307 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.867 5.867 8 Si 0.918 3.082 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.440 3.560 13 O -0.597 6.597 14 C -0.128 4.128 15 C -0.095 4.095 16 C -0.118 4.118 17 C 0.060 3.940 18 O -0.316 6.316 19 C 0.139 3.861 20 C -0.215 4.215 21 C -0.076 4.076 22 C -0.165 4.165 23 C -0.051 4.051 24 C -0.114 4.114 25 C -0.158 4.158 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 0.341 22.630 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.003 4.003 3 N -0.161 5.161 4 C -0.434 4.434 5 H 0.121 0.879 6 C -0.174 4.174 7 N -0.507 5.507 8 Si 0.745 3.255 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.229 3.771 13 O -0.483 6.483 14 C -0.168 4.168 15 C -0.133 4.133 16 C -0.155 4.155 17 C -0.015 4.015 18 O -0.229 6.229 19 C 0.093 3.907 20 C -0.234 4.234 21 C -0.094 4.094 22 C -0.183 4.183 23 C -0.051 4.051 24 C -0.171 4.171 25 C -0.176 4.176 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.089 0.564 22.408 22.442 hybrid contribution 0.425 0.187 -0.990 1.093 sum -0.664 0.752 21.419 21.442 Atomic orbital electron populations 1.22125 0.96750 0.99787 1.02013 1.21438 0.94469 0.83742 1.00687 1.43849 1.55406 1.11264 1.05629 1.19721 1.35998 1.05466 0.82258 0.87898 1.25183 0.96042 0.97250 0.98893 1.70116 1.24995 1.28925 1.26621 0.86071 0.79986 0.79144 0.80317 1.20430 1.21162 1.19552 1.19970 0.85072 0.86904 0.85146 1.90494 1.52200 1.18593 1.87053 1.21529 1.02436 0.98961 0.93907 1.21159 1.02632 0.98428 0.91095 1.21609 1.03050 0.98428 0.92440 1.22942 1.00100 0.96894 0.81582 1.86064 1.81759 1.41356 1.13757 1.19037 0.94681 0.90183 0.86796 1.21335 1.07457 0.94547 1.00080 1.20940 0.97168 0.99352 0.91962 1.20917 1.04098 0.95463 0.97817 1.19699 0.96826 0.93796 0.94770 1.20805 1.01809 1.01073 0.93393 1.20296 1.06729 1.01122 0.89481 0.95703 0.89016 0.94403 0.88132 0.94974 0.92333 0.90687 0.90204 0.91236 0.91288 0.90935 0.90890 0.91822 0.91832 0.85282 0.85821 0.86110 0.90936 0.91364 0.91334 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.64 37.16 0.36 -2.71 16 2 C 0.12 2.66 5.07 -4.04 -0.02 2.64 16 3 N -0.44 -11.24 2.64 -114.81 -0.30 -11.55 16 4 C -0.31 -8.49 9.43 -14.93 -0.14 -8.64 16 5 H 0.10 3.03 7.31 -52.49 -0.38 2.65 16 6 C 0.03 0.75 4.90 -17.46 -0.09 0.66 16 7 N -0.87 -22.10 8.65 55.50 0.48 -21.62 16 8 Si 0.92 20.47 29.62 -169.99 -5.04 15.43 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.44 10.65 7.58 -10.99 -0.08 10.57 16 13 O -0.60 -16.47 15.58 5.54 0.09 -16.38 16 14 C -0.13 -2.30 4.31 -27.88 -0.12 -2.42 16 15 C -0.10 -1.49 4.50 -26.73 -0.12 -1.61 16 16 C -0.12 -1.47 5.58 -26.73 -0.15 -1.62 16 17 C 0.06 0.71 4.74 37.16 0.18 0.88 16 18 O -0.32 -4.08 10.14 -19.42 -0.20 -4.28 16 19 C 0.14 1.68 6.69 -39.22 -0.26 1.42 16 20 C -0.22 -2.36 9.04 -39.43 -0.36 -2.72 16 21 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 22 C -0.16 -1.48 9.70 -39.56 -0.38 -1.86 16 23 C -0.05 -0.47 5.88 -104.64 -0.62 -1.08 16 24 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 25 C -0.16 -1.70 9.64 -39.44 -0.38 -2.08 16 26 H 0.02 0.47 6.45 -51.93 -0.34 0.14 16 27 H 0.09 2.19 6.38 -51.93 -0.33 1.86 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 2.41 5.83 -51.93 -0.30 2.10 16 30 H 0.03 0.61 6.71 -51.93 -0.35 0.27 16 31 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 32 H 0.07 1.22 7.42 -51.93 -0.39 0.84 16 33 H 0.08 1.35 6.41 -51.93 -0.33 1.02 16 34 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 39 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 40 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 45 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -30.50 370.23 -8.93 -39.43 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.32 Total: 3.43 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.22 Total: -10.06 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.18 Total: -33.16 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.11 Total: -20.66 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.04 Total: 15.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.50 -8.93 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.147 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.38 seconds