Wall clock time and date at job start Tue Mar 31 2020 09:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46478 * 2 1 4 4 C 1.37098 * 119.99899 * 263.54931 * 3 2 1 5 5 H 1.08000 * 119.99771 * 188.38863 * 4 3 2 6 6 C 1.38951 * 120.00173 * 8.39982 * 4 3 2 7 7 N 1.31417 * 119.99833 * 25.15993 * 6 4 3 8 8 Si 1.86801 * 120.00109 * 205.16842 * 6 4 3 9 9 H 1.48500 * 109.47170 * 84.98527 * 8 6 4 10 10 H 1.48500 * 109.46871 * 204.98182 * 8 6 4 11 11 H 1.48499 * 109.46758 * 324.98503 * 8 6 4 12 12 C 1.34773 * 120.00062 * 83.56107 * 3 2 1 13 13 O 1.21295 * 119.99884 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00283 * 359.97438 * 12 3 2 15 15 C 1.52998 * 109.47456 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47118 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46861 * 179.97438 * 16 15 14 18 18 O 1.42907 * 109.46813 * 179.97438 * 17 16 15 19 19 C 1.35898 * 116.99746 * 180.02562 * 18 17 16 20 20 C 1.38754 * 120.05845 * 0.02729 * 19 18 17 21 21 C 1.38119 * 119.94526 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.05806 * 359.74388 * 21 20 19 23 23 C 1.38251 * 120.10516 * 0.50845 * 22 21 20 24 24 C 1.50710 * 119.96770 * 179.76930 * 23 22 21 25 25 C 1.38162 * 120.05870 * 359.49036 * 23 22 21 26 26 H 1.09002 * 109.47243 * 299.99687 * 1 2 3 27 27 H 1.09004 * 109.47535 * 60.00513 * 1 2 3 28 28 H 1.09005 * 109.46872 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47243 * 240.00313 * 2 1 3 30 30 H 1.09001 * 109.46836 * 119.99695 * 2 1 3 31 31 H 0.96998 * 119.99692 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47083 * 60.00023 * 14 12 3 33 33 H 1.09004 * 109.46879 * 300.00767 * 14 12 3 34 34 H 1.09001 * 109.47456 * 59.99639 * 15 14 12 35 35 H 1.09004 * 109.46535 * 299.99612 * 15 14 12 36 36 H 1.08997 * 109.47287 * 59.99988 * 16 15 14 37 37 H 1.08997 * 109.46989 * 299.99603 * 16 15 14 38 38 H 1.08997 * 109.46810 * 60.00149 * 17 16 15 39 39 H 1.08997 * 109.47365 * 299.99826 * 17 16 15 40 40 H 1.07998 * 120.02691 * 359.95212 * 20 19 18 41 41 H 1.08000 * 119.97276 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.95067 * 180.27896 * 22 21 20 43 43 H 1.09001 * 109.46702 * 269.72284 * 24 23 22 44 44 H 1.08998 * 109.47044 * 29.72048 * 24 23 22 45 45 H 1.08998 * 109.46836 * 149.72382 * 24 23 22 46 46 H 1.07995 * 120.02750 * 180.22970 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8578 2.9479 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1282 0.4788 -2.4732 8 14 3.1405 1.7446 -3.8944 9 1 4.3646 0.9040 -3.8873 10 1 2.3539 1.4631 -5.1221 11 1 3.5247 3.1789 -3.8706 12 6 2.1193 2.0603 1.1598 13 8 2.5240 3.2037 1.1598 14 6 1.7297 1.3989 2.4567 15 6 1.9376 2.3799 3.6122 16 6 1.5426 1.7081 4.9288 17 6 1.7511 2.6890 6.0844 18 8 1.3816 2.0618 7.3141 19 6 1.5073 2.8024 8.4466 20 6 1.9761 4.1064 8.3757 21 6 2.1024 4.8573 9.5281 22 6 1.7571 4.3122 10.7512 23 6 1.2947 3.0114 10.8251 24 6 0.9242 2.4188 12.1603 25 6 1.1665 2.2562 9.6752 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.9425 0.0385 -3.3173 32 1 2.3483 0.5153 2.6140 33 1 0.6809 1.1052 2.4139 34 1 1.3188 3.2633 3.4546 35 1 2.9864 2.6738 3.6550 36 1 2.1618 0.8250 5.0862 37 1 0.4940 1.4139 4.8863 38 1 1.1322 3.5724 5.9272 39 1 2.7999 2.9830 6.1268 40 1 2.2423 4.5338 7.4203 41 1 2.4668 5.8724 9.4734 42 1 1.8523 4.9024 11.6506 43 1 1.7977 1.9358 12.5983 44 1 0.5750 3.2095 12.8244 45 1 0.1321 1.6827 12.0238 46 1 0.8018 1.2414 9.7331 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:14 Heat of formation + Delta-G solvation = -74.800547 kcal Electronic energy + Delta-G solvation = -23915.781646 eV Core-core repulsion = 20383.844471 eV Total energy + Delta-G solvation = -3531.937175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12102 -40.48777 -38.74607 -37.13107 -35.75099 -33.79350 -33.40252 -31.71540 -31.15590 -30.11040 -27.88754 -27.07931 -25.17508 -23.87258 -23.52030 -22.42043 -21.69481 -20.40674 -18.77747 -18.67418 -17.81220 -17.39748 -17.05483 -16.85267 -16.41970 -16.33041 -15.92434 -15.19137 -15.14431 -14.72232 -14.53231 -14.44285 -14.28447 -14.10095 -13.81146 -13.51678 -13.21555 -13.04994 -12.91210 -12.79788 -12.77169 -12.62631 -12.48011 -12.34431 -12.21326 -12.10826 -11.97415 -11.84025 -11.65778 -11.58407 -11.41849 -10.80937 -10.26621 -9.74014 -9.68927 -9.14631 -8.32725 -5.82013 0.35906 0.49044 1.36264 1.42562 1.52656 2.06149 2.14566 2.30485 2.79709 3.06964 3.15739 3.80198 3.90222 3.91057 3.96048 3.99676 4.17178 4.27405 4.28207 4.33245 4.42549 4.44171 4.49672 4.56999 4.70067 4.72749 4.82174 4.85615 4.87360 4.91811 4.95903 4.99121 5.05211 5.17738 5.25290 5.28821 5.37433 5.41794 5.45091 5.50405 5.52151 5.65617 5.88343 5.93144 6.11288 6.45362 6.56602 7.22021 7.55710 8.11732 8.65495 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.039023 B = 0.002023 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.359441 B =13837.867759 C =14406.166007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.120 3.880 3 N -0.456 5.456 4 C -0.352 4.352 5 H 0.069 0.931 6 C 0.004 3.996 7 N -0.868 5.868 8 Si 0.978 3.022 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.425 3.575 13 O -0.644 6.644 14 C -0.116 4.116 15 C -0.087 4.087 16 C -0.105 4.105 17 C 0.061 3.939 18 O -0.329 6.329 19 C 0.113 3.887 20 C -0.231 4.231 21 C -0.082 4.082 22 C -0.167 4.167 23 C -0.054 4.054 24 C -0.113 4.113 25 C -0.173 4.173 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.273 0.727 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.130 0.870 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -0.804 24.261 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 N -0.174 5.174 4 C -0.479 4.479 5 H 0.087 0.913 6 C -0.199 4.199 7 N -0.506 5.506 8 Si 0.803 3.197 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.215 3.785 13 O -0.533 6.533 14 C -0.156 4.156 15 C -0.125 4.125 16 C -0.142 4.142 17 C -0.013 4.013 18 O -0.243 6.243 19 C 0.068 3.932 20 C -0.250 4.250 21 C -0.100 4.100 22 C -0.185 4.185 23 C -0.054 4.054 24 C -0.169 4.169 25 C -0.191 4.191 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.442 -0.621 24.044 24.095 hybrid contribution 0.503 0.562 -1.470 1.652 sum -0.939 -0.059 22.574 22.594 Atomic orbital electron populations 1.21977 0.95624 1.01238 1.00870 1.21531 0.95359 0.82102 1.01325 1.44108 1.55436 1.12468 1.05383 1.19549 1.38542 1.05532 0.84296 0.91301 1.25829 0.96392 0.96980 1.00714 1.70194 1.24479 1.28401 1.27509 0.85187 0.78764 0.78324 0.77443 1.19535 1.19756 1.20634 1.21073 0.83954 0.86660 0.86774 1.90453 1.54044 1.20824 1.87982 1.21504 1.03587 0.99614 0.90904 1.21041 1.01731 0.97688 0.92049 1.21429 1.03597 0.98440 0.90768 1.22866 1.00384 0.96685 0.81400 1.86008 1.82252 1.41909 1.14125 1.19319 0.96153 0.90859 0.86894 1.21488 1.08051 0.94552 1.00886 1.21263 0.96765 1.00229 0.91772 1.21291 1.03035 0.95609 0.98540 1.20091 0.95895 0.93917 0.95531 1.20868 1.02415 1.01657 0.91991 1.20535 1.07191 1.01716 0.89684 0.94441 0.92505 0.91557 0.90192 0.91513 0.91699 0.88265 0.88566 0.92745 0.92417 0.89888 0.90123 0.91695 0.91532 0.85172 0.83807 0.83618 0.89934 0.89874 0.90847 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 9.64 71.98 0.69 -4.83 16 2 C 0.12 5.15 5.07 86.38 0.44 5.59 16 3 N -0.46 -23.45 2.64 -635.53 -1.68 -25.13 16 4 C -0.35 -20.11 9.43 84.04 0.79 -19.31 16 5 H 0.07 4.31 7.31 -2.91 -0.02 4.29 16 6 C 0.00 0.20 4.90 84.93 0.42 0.62 16 7 N -0.87 -43.99 8.65 21.66 0.19 -43.80 16 8 Si 0.98 42.24 29.62 68.60 2.03 44.27 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 C 0.42 20.87 7.58 87.66 0.66 21.54 16 13 O -0.64 -36.98 15.58 -3.08 -0.05 -37.03 16 14 C -0.12 -4.03 4.31 29.85 0.13 -3.90 16 15 C -0.09 -2.68 4.50 30.59 0.14 -2.54 16 16 C -0.10 -2.48 5.58 30.59 0.17 -2.31 16 17 C 0.06 1.43 4.74 71.98 0.34 1.77 16 18 O -0.33 -8.38 10.14 -92.40 -0.94 -9.31 16 19 C 0.11 2.71 6.69 22.51 0.15 2.86 16 20 C -0.23 -5.00 9.04 22.36 0.20 -4.80 16 21 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 22 C -0.17 -2.65 9.70 22.28 0.22 -2.43 16 23 C -0.05 -0.91 5.88 -19.88 -0.12 -1.03 16 24 C -0.11 -1.16 10.01 71.24 0.71 -0.44 16 25 C -0.17 -3.61 9.64 22.36 0.22 -3.39 16 26 H 0.04 1.36 6.45 -2.39 -0.02 1.34 16 27 H 0.06 2.67 6.38 -2.39 -0.02 2.66 16 28 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.08 3.77 5.83 -2.39 -0.01 3.76 16 30 H 0.07 2.38 6.71 -2.39 -0.02 2.37 16 31 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 32 H 0.10 2.97 7.42 -2.39 -0.02 2.96 16 33 H 0.10 3.04 6.41 -2.39 -0.02 3.03 16 34 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.06 1.90 8.10 -2.38 -0.02 1.88 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.46 7.66 -2.39 -0.02 1.45 16 39 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 40 H 0.13 2.65 6.30 -2.91 -0.02 2.63 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 44 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 45 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 46 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -68.24 370.23 5.90 -62.34 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.96 Total: 22.52 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.39 Total: -13.86 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.49 Total: -68.93 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.98 Total: -46.34 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -68.24 5.90 -62.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.465 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds