Wall clock time and date at job start Tue Mar 31 2020 09:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47536 * 2 1 4 4 C 1.37096 * 119.99662 * 264.65346 * 3 2 1 5 5 H 1.08005 * 119.99472 * 191.50653 * 4 3 2 6 6 C 1.38945 * 120.00284 * 11.51279 * 4 3 2 7 7 N 1.31415 * 120.00217 * 23.89890 * 6 4 3 8 8 Si 1.86807 * 119.99929 * 203.90226 * 6 4 3 9 9 H 1.48501 * 109.47118 * 59.99897 * 8 6 4 10 10 H 1.48503 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46826 * 299.99647 * 8 6 4 12 12 C 1.34778 * 120.00070 * 84.65676 * 3 2 1 13 13 O 1.21290 * 120.00035 * 2.56280 * 12 3 2 14 14 C 1.50698 * 119.99967 * 182.57337 * 12 3 2 15 15 H 1.09001 * 109.47007 * 48.94605 * 14 12 3 16 16 C 1.53003 * 109.47107 * 288.95259 * 14 12 3 17 17 O 1.42898 * 109.47140 * 168.95152 * 14 12 3 18 18 C 1.35901 * 116.99776 * 206.03689 * 17 14 12 19 19 C 1.38749 * 120.05847 * 354.57986 * 18 17 14 20 20 C 1.38122 * 119.94847 * 180.02562 * 19 18 17 21 21 C 1.38293 * 120.05513 * 359.97438 * 20 19 18 22 22 C 1.38251 * 120.10827 * 0.03691 * 21 20 19 23 23 C 1.50698 * 119.97026 * 179.97438 * 22 21 20 24 24 C 1.52991 * 109.47415 * 300.00505 * 23 22 21 25 25 C 1.53005 * 109.46787 * 60.00722 * 23 22 21 26 26 C 1.38165 * 120.05415 * 359.68279 * 22 21 20 27 27 H 1.08995 * 109.46707 * 301.20161 * 1 2 3 28 28 H 1.09007 * 109.46434 * 61.19408 * 1 2 3 29 29 H 1.08997 * 109.47438 * 181.19692 * 1 2 3 30 30 H 1.09003 * 109.47278 * 239.99480 * 2 1 3 31 31 H 1.09001 * 109.47319 * 119.99866 * 2 1 3 32 32 H 0.96997 * 119.99785 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46772 * 303.68573 * 16 14 12 34 34 H 1.08996 * 109.47452 * 63.68255 * 16 14 12 35 35 H 1.09003 * 109.47171 * 183.68752 * 16 14 12 36 36 H 1.08001 * 120.02576 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.97600 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.94977 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47108 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47333 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47320 * 299.99577 * 24 23 22 42 42 H 1.08999 * 109.47593 * 60.00070 * 24 23 22 43 43 H 1.08999 * 109.47418 * 59.99735 * 25 23 22 44 44 H 1.09001 * 109.46932 * 179.97438 * 25 23 22 45 45 H 1.08999 * 109.46987 * 299.99695 * 25 23 22 46 46 H 1.08001 * 120.02702 * 180.29007 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3512 1.9905 -1.1822 5 1 2.8819 2.9312 -1.1741 6 6 2.0058 1.3980 -2.3905 7 7 0.9999 0.5541 -2.4448 8 14 2.9715 1.8009 -3.9381 9 1 4.3944 1.4218 -3.7464 10 1 2.4080 1.0434 -5.0844 11 1 2.8799 3.2572 -4.2135 12 6 2.1406 2.0528 1.1621 13 8 1.8907 1.4989 2.2118 14 6 2.5876 3.4919 1.1573 15 1 2.0020 4.0518 0.4281 16 6 4.0698 3.5644 0.7848 17 8 2.3950 4.0549 2.4565 18 6 2.2157 5.4003 2.5255 19 6 2.3367 6.1770 1.3822 20 6 2.1546 7.5443 1.4550 21 6 1.8514 8.1391 2.6661 22 6 1.7305 7.3674 3.8068 23 6 1.4006 8.0188 5.1250 24 6 2.4890 9.0342 5.4787 25 6 0.0520 8.7335 5.0172 26 6 1.9060 5.9986 3.7380 27 1 -0.3632 0.5324 0.8790 28 1 -0.3632 0.4952 -0.9006 29 1 -0.3634 -1.0274 0.0215 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.7586 0.1408 -3.2885 33 1 4.6484 2.9510 1.4756 34 1 4.2075 3.1952 -0.2315 35 1 4.4095 4.5984 0.8450 36 1 2.5739 5.7130 0.4362 37 1 2.2482 8.1492 0.5653 38 1 1.7089 9.2082 2.7210 39 1 1.3475 7.2576 5.9033 40 1 2.2501 9.5057 6.4319 41 1 3.4497 8.5250 5.5555 42 1 2.5425 9.7955 4.7005 43 1 -0.7235 8.0102 4.7652 44 1 -0.1869 9.2044 5.9708 45 1 0.1054 9.4948 4.2390 46 1 1.8069 5.3956 4.6285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:57 Heat of formation + Delta-G solvation = -46.010321 kcal Electronic energy + Delta-G solvation = -25544.067612 eV Core-core repulsion = 22013.378875 eV Total energy + Delta-G solvation = -3530.688737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.18523 -38.84086 -37.50387 -35.11286 -34.73843 -32.05085 -31.56920 -30.21519 -29.15480 -28.92574 -27.25818 -25.13119 -24.09170 -23.19768 -22.36522 -21.66484 -19.85699 -19.06694 -17.57660 -17.39597 -16.15245 -15.65640 -15.34344 -15.09246 -14.81292 -14.45955 -14.28103 -13.91947 -13.69569 -13.43056 -13.34359 -13.18545 -12.82820 -12.51802 -12.40918 -12.20641 -12.05634 -11.85674 -11.61292 -11.52057 -11.32989 -11.26088 -11.14734 -10.99162 -10.81657 -10.77273 -10.56004 -10.43884 -10.28933 -10.20072 -9.68930 -9.01801 -8.65688 -8.40286 -7.88211 -7.83155 -6.48215 -3.99838 1.49249 1.67314 3.02246 3.13733 3.14303 3.41126 3.78019 3.94550 4.00214 4.61894 4.75122 4.87315 4.91054 5.04536 5.09850 5.28475 5.31083 5.42509 5.48859 5.51055 5.58129 5.65963 5.69365 5.70734 5.78807 5.84933 5.95849 6.09966 6.12563 6.16217 6.19157 6.27364 6.50963 6.54735 6.60982 6.65311 6.70672 6.74451 6.81882 6.97861 7.00815 7.23274 7.31983 7.63251 7.77451 7.85215 8.33934 8.95743 9.41349 9.82690 10.48237 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.003553 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.967759 B = 7877.911734 C = 8553.979406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 N -0.432 5.432 4 C -0.353 4.353 5 H 0.104 0.896 6 C 0.042 3.958 7 N -0.848 5.848 8 Si 0.914 3.086 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.458 3.542 13 O -0.591 6.591 14 C 0.083 3.917 15 H 0.091 0.909 16 C -0.176 4.176 17 O -0.287 6.287 18 C 0.146 3.854 19 C -0.217 4.217 20 C -0.078 4.078 21 C -0.164 4.164 22 C -0.042 4.042 23 C -0.057 4.057 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.156 4.156 27 H 0.026 0.974 28 H 0.096 0.904 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.271 0.729 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 13.448 5.996 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 N -0.151 5.151 4 C -0.480 4.480 5 H 0.122 0.878 6 C -0.164 4.164 7 N -0.485 5.485 8 Si 0.740 3.260 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.245 3.755 13 O -0.476 6.476 14 C 0.024 3.976 15 H 0.109 0.891 16 C -0.233 4.233 17 O -0.199 6.199 18 C 0.099 3.901 19 C -0.235 4.235 20 C -0.096 4.096 21 C -0.182 4.182 22 C -0.042 4.042 23 C -0.075 4.075 24 C -0.200 4.200 25 C -0.200 4.200 26 C -0.174 4.174 27 H 0.045 0.955 28 H 0.114 0.886 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.741 12.854 6.491 14.504 hybrid contribution 0.415 0.186 -1.280 1.358 sum 2.156 13.040 5.211 14.207 Atomic orbital electron populations 1.22120 0.96586 0.99541 1.02428 1.21110 0.94619 0.82473 1.00025 1.43681 1.55364 1.11395 1.04655 1.19778 1.36837 1.08561 0.82798 0.87815 1.25215 0.95106 0.96857 0.99210 1.70110 1.22089 1.29149 1.27178 0.86204 0.80287 0.78815 0.80699 1.19713 1.20751 1.19731 1.19433 0.84601 0.86948 0.84561 1.90558 1.56456 1.69299 1.31326 1.22096 0.97663 0.94961 0.82870 0.89138 1.22383 0.94535 1.02135 1.04275 1.86198 1.85344 1.17371 1.31022 1.19149 0.93484 0.83371 0.94060 1.21403 1.08752 0.94925 0.98464 1.20878 0.97200 0.93973 0.97527 1.20744 1.05721 0.99408 0.92361 1.19551 0.97355 0.92299 0.95013 1.20120 0.95589 0.97669 0.94133 1.21840 0.98371 0.98592 1.01152 1.21848 0.96204 1.00381 1.01600 1.20305 1.06641 0.93977 0.96502 0.95511 0.88561 0.94798 0.89322 0.94253 0.91863 0.91752 0.88660 0.92296 0.85037 0.86123 0.86494 0.90370 0.92541 0.92476 0.92456 0.92390 0.92534 0.92442 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.71 37.16 0.36 -3.12 16 2 C 0.14 3.43 5.27 -4.04 -0.02 3.41 16 3 N -0.43 -10.78 2.64 -114.81 -0.30 -11.09 16 4 C -0.35 -8.45 8.49 -14.94 -0.13 -8.58 16 5 H 0.10 2.29 4.67 -52.48 -0.25 2.04 16 6 C 0.04 1.00 4.88 -17.47 -0.09 0.91 16 7 N -0.85 -20.62 8.44 55.50 0.47 -20.15 16 8 Si 0.91 18.23 29.62 -169.99 -5.03 13.19 16 9 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 12 C 0.46 11.47 6.97 -10.99 -0.08 11.40 16 13 O -0.59 -16.61 16.19 -14.11 -0.23 -16.84 16 14 C 0.08 1.75 1.80 -27.88 -0.05 1.70 16 15 H 0.09 1.84 5.69 -51.93 -0.30 1.55 16 16 C -0.18 -3.16 8.82 37.16 0.33 -2.83 16 17 O -0.29 -6.08 9.35 -39.09 -0.37 -6.44 16 18 C 0.15 2.60 6.60 -39.22 -0.26 2.34 16 19 C -0.22 -3.42 8.27 -39.44 -0.33 -3.75 16 20 C -0.08 -1.03 10.04 -39.60 -0.40 -1.43 16 21 C -0.16 -2.04 8.71 -39.56 -0.34 -2.38 16 22 C -0.04 -0.55 4.78 -104.64 -0.50 -1.05 16 23 C -0.06 -0.58 3.09 -91.77 -0.28 -0.86 16 24 C -0.14 -1.24 9.01 37.15 0.33 -0.91 16 25 C -0.14 -1.30 9.01 37.16 0.33 -0.96 16 26 C -0.16 -2.45 9.61 -39.43 -0.38 -2.83 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 2.40 5.96 -51.92 -0.31 2.09 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.19 6.10 -51.93 -0.32 1.87 16 31 H 0.04 0.96 7.55 -51.93 -0.39 0.57 16 32 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.70 5.59 -51.93 -0.29 1.41 16 35 H 0.06 0.91 7.09 -51.93 -0.37 0.54 16 36 H 0.13 2.03 5.52 -52.49 -0.29 1.74 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.18 7.09 -52.49 -0.37 0.81 16 39 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 46 H 0.13 1.94 7.94 -52.49 -0.42 1.52 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -28.54 361.82 -8.49 -37.03 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.99 Total: 7.79 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.49 Total: -8.95 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.17 Total: -31.24 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.59 Total: -23.28 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.54 -8.49 -37.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.978 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds