Wall clock time and date at job start Tue Mar 31 2020 09:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47536 * 2 1 4 4 C 1.37096 * 119.99662 * 264.65346 * 3 2 1 5 5 H 1.08005 * 119.99472 * 191.50653 * 4 3 2 6 6 C 1.38945 * 120.00284 * 11.51279 * 4 3 2 7 7 N 1.31415 * 120.00217 * 23.89890 * 6 4 3 8 8 Si 1.86807 * 119.99929 * 203.90226 * 6 4 3 9 9 H 1.48501 * 109.47118 * 59.99897 * 8 6 4 10 10 H 1.48503 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46826 * 299.99647 * 8 6 4 12 12 C 1.34778 * 120.00070 * 84.65676 * 3 2 1 13 13 O 1.21290 * 120.00035 * 2.56280 * 12 3 2 14 14 C 1.50698 * 119.99967 * 182.57337 * 12 3 2 15 15 H 1.09001 * 109.47007 * 48.94605 * 14 12 3 16 16 C 1.53003 * 109.47107 * 288.95259 * 14 12 3 17 17 O 1.42898 * 109.47140 * 168.95152 * 14 12 3 18 18 C 1.35901 * 116.99776 * 206.03689 * 17 14 12 19 19 C 1.38749 * 120.05847 * 354.57986 * 18 17 14 20 20 C 1.38122 * 119.94847 * 180.02562 * 19 18 17 21 21 C 1.38293 * 120.05513 * 359.97438 * 20 19 18 22 22 C 1.38251 * 120.10827 * 0.03691 * 21 20 19 23 23 C 1.50698 * 119.97026 * 179.97438 * 22 21 20 24 24 C 1.52991 * 109.47415 * 300.00505 * 23 22 21 25 25 C 1.53005 * 109.46787 * 60.00722 * 23 22 21 26 26 C 1.38165 * 120.05415 * 359.68279 * 22 21 20 27 27 H 1.08995 * 109.46707 * 301.20161 * 1 2 3 28 28 H 1.09007 * 109.46434 * 61.19408 * 1 2 3 29 29 H 1.08997 * 109.47438 * 181.19692 * 1 2 3 30 30 H 1.09003 * 109.47278 * 239.99480 * 2 1 3 31 31 H 1.09001 * 109.47319 * 119.99866 * 2 1 3 32 32 H 0.96997 * 119.99785 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46772 * 303.68573 * 16 14 12 34 34 H 1.08996 * 109.47452 * 63.68255 * 16 14 12 35 35 H 1.09003 * 109.47171 * 183.68752 * 16 14 12 36 36 H 1.08001 * 120.02576 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.97600 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.94977 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47108 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47333 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47320 * 299.99577 * 24 23 22 42 42 H 1.08999 * 109.47593 * 60.00070 * 24 23 22 43 43 H 1.08999 * 109.47418 * 59.99735 * 25 23 22 44 44 H 1.09001 * 109.46932 * 179.97438 * 25 23 22 45 45 H 1.08999 * 109.46987 * 299.99695 * 25 23 22 46 46 H 1.08001 * 120.02702 * 180.29007 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3512 1.9905 -1.1822 5 1 2.8819 2.9312 -1.1741 6 6 2.0058 1.3980 -2.3905 7 7 0.9999 0.5541 -2.4448 8 14 2.9715 1.8009 -3.9381 9 1 4.3944 1.4218 -3.7464 10 1 2.4080 1.0434 -5.0844 11 1 2.8799 3.2572 -4.2135 12 6 2.1406 2.0528 1.1621 13 8 1.8907 1.4989 2.2118 14 6 2.5876 3.4919 1.1573 15 1 2.0020 4.0518 0.4281 16 6 4.0698 3.5644 0.7848 17 8 2.3950 4.0549 2.4565 18 6 2.2157 5.4003 2.5255 19 6 2.3367 6.1770 1.3822 20 6 2.1546 7.5443 1.4550 21 6 1.8514 8.1391 2.6661 22 6 1.7305 7.3674 3.8068 23 6 1.4006 8.0188 5.1250 24 6 2.4890 9.0342 5.4787 25 6 0.0520 8.7335 5.0172 26 6 1.9060 5.9986 3.7380 27 1 -0.3632 0.5324 0.8790 28 1 -0.3632 0.4952 -0.9006 29 1 -0.3634 -1.0274 0.0215 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.7586 0.1408 -3.2885 33 1 4.6484 2.9510 1.4756 34 1 4.2075 3.1952 -0.2315 35 1 4.4095 4.5984 0.8450 36 1 2.5739 5.7130 0.4362 37 1 2.2482 8.1492 0.5653 38 1 1.7089 9.2082 2.7210 39 1 1.3475 7.2576 5.9033 40 1 2.2501 9.5057 6.4319 41 1 3.4497 8.5250 5.5555 42 1 2.5425 9.7955 4.7005 43 1 -0.7235 8.0102 4.7652 44 1 -0.1869 9.2044 5.9708 45 1 0.1054 9.4948 4.2390 46 1 1.8069 5.3956 4.6285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:56 Heat of formation + Delta-G solvation = -58.776814 kcal Electronic energy + Delta-G solvation = -25544.621209 eV Core-core repulsion = 22013.378875 eV Total energy + Delta-G solvation = -3531.242334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.58660 -40.43531 -38.90414 -36.97329 -35.79262 -33.73136 -33.36539 -31.57496 -30.70333 -30.12551 -27.93628 -26.98088 -25.66774 -24.51005 -23.54243 -23.20619 -21.26768 -20.67318 -19.11555 -18.90475 -17.71560 -17.00571 -16.76577 -16.57597 -16.18962 -16.01488 -15.79268 -15.33027 -15.08180 -14.57324 -14.49310 -14.40757 -14.35901 -14.18421 -13.85101 -13.39417 -13.27741 -13.20861 -13.00958 -12.87123 -12.84158 -12.66549 -12.56044 -12.29653 -12.11486 -12.05782 -12.00358 -11.74994 -11.63056 -11.61298 -11.44731 -10.91663 -10.31673 -9.80630 -9.75440 -9.09337 -8.30738 -5.89595 0.38495 0.51587 1.41600 1.52146 1.60053 1.83571 2.00637 2.34094 2.82300 3.05317 3.09206 3.74817 3.80353 3.93589 4.04128 4.05060 4.10588 4.25987 4.35032 4.39720 4.44037 4.49812 4.59763 4.65256 4.72452 4.76193 4.81066 4.86430 4.87588 5.03017 5.03818 5.04076 5.07090 5.07892 5.23171 5.32857 5.33978 5.42156 5.43644 5.44398 5.55263 5.69921 5.74380 5.82433 5.92310 6.40094 6.53546 7.08256 7.50201 7.92211 8.66635 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.003553 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.967759 B = 7877.911734 C = 8553.979406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.139 3.861 3 N -0.435 5.435 4 C -0.376 4.376 5 H 0.121 0.879 6 C 0.006 3.994 7 N -0.870 5.870 8 Si 0.984 3.016 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.261 1.261 12 C 0.436 3.564 13 O -0.636 6.636 14 C 0.095 3.905 15 H 0.093 0.907 16 C -0.164 4.164 17 O -0.319 6.319 18 C 0.110 3.890 19 C -0.227 4.227 20 C -0.075 4.075 21 C -0.155 4.155 22 C -0.038 4.038 23 C -0.058 4.058 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.175 4.175 27 H 0.008 0.992 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.274 0.726 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 16.527 4.815 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 N -0.153 5.153 4 C -0.502 4.502 5 H 0.139 0.861 6 C -0.199 4.199 7 N -0.507 5.507 8 Si 0.808 3.192 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.186 1.186 12 C 0.225 3.775 13 O -0.525 6.525 14 C 0.036 3.964 15 H 0.111 0.889 16 C -0.221 4.221 17 O -0.232 6.232 18 C 0.065 3.935 19 C -0.246 4.246 20 C -0.092 4.092 21 C -0.172 4.172 22 C -0.038 4.038 23 C -0.077 4.077 24 C -0.196 4.196 25 C -0.198 4.198 26 C -0.193 4.193 27 H 0.027 0.973 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.336 15.950 5.300 16.969 hybrid contribution 0.146 -0.733 -0.880 1.155 sum 2.482 15.217 4.420 16.039 Atomic orbital electron populations 1.21963 0.95875 1.00614 1.00765 1.21104 0.95188 0.82832 0.99300 1.43926 1.54598 1.11464 1.05300 1.20254 1.37697 1.09642 0.82618 0.86143 1.26086 0.95389 0.96518 1.01872 1.70190 1.22745 1.29591 1.28152 0.85122 0.78599 0.79017 0.76507 1.19362 1.20922 1.18559 1.20212 0.84645 0.88717 0.83944 1.90503 1.58589 1.70692 1.32703 1.21886 0.99189 0.92072 0.83300 0.88918 1.22294 0.92384 1.03628 1.03809 1.86133 1.86515 1.19658 1.30920 1.19482 0.96080 0.82206 0.95727 1.21501 1.09397 0.96067 0.97629 1.21266 0.95780 0.93051 0.99147 1.21158 1.03612 1.00954 0.91523 1.19913 0.95828 0.91172 0.96870 1.20207 0.97007 0.98048 0.92422 1.21823 0.97144 0.98162 1.02455 1.21840 0.94772 1.00147 1.03013 1.20485 1.07691 0.95390 0.95773 0.97294 0.89751 0.92435 0.89544 0.95180 0.91545 0.92738 0.88445 0.89643 0.85092 0.82994 0.83176 0.90899 0.90799 0.93363 0.91443 0.93755 0.90717 0.91427 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 9.71 71.98 0.70 -5.74 16 2 C 0.14 6.98 5.27 86.38 0.46 7.43 16 3 N -0.44 -22.32 2.64 -635.54 -1.68 -24.00 16 4 C -0.38 -18.00 8.49 84.04 0.71 -17.29 16 5 H 0.12 5.23 4.67 -2.91 -0.01 5.21 16 6 C 0.01 0.27 4.88 84.92 0.41 0.68 16 7 N -0.87 -42.10 8.44 21.66 0.18 -41.92 16 8 Si 0.98 36.26 29.62 68.60 2.03 38.30 16 9 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 10 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 12 C 0.44 22.79 6.97 87.66 0.61 23.40 16 13 O -0.64 -37.73 16.19 15.74 0.25 -37.48 16 14 C 0.09 4.08 1.80 29.85 0.05 4.13 16 15 H 0.09 3.86 5.69 -2.39 -0.01 3.85 16 16 C -0.16 -5.88 8.82 71.98 0.63 -5.25 16 17 O -0.32 -14.13 9.35 -73.63 -0.69 -14.82 16 18 C 0.11 4.02 6.60 22.51 0.15 4.17 16 19 C -0.23 -6.99 8.27 22.36 0.19 -6.80 16 20 C -0.07 -1.78 10.04 22.26 0.22 -1.56 16 21 C -0.15 -3.36 8.71 22.29 0.19 -3.16 16 22 C -0.04 -0.93 4.78 -19.88 -0.10 -1.03 16 23 C -0.06 -1.09 3.09 -11.54 -0.04 -1.12 16 24 C -0.14 -2.02 9.01 71.98 0.65 -1.38 16 25 C -0.14 -2.19 9.01 71.98 0.65 -1.54 16 26 C -0.17 -5.63 9.61 22.37 0.21 -5.41 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 4.28 5.96 -2.38 -0.01 4.26 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.09 4.35 6.10 -2.39 -0.01 4.34 16 31 H 0.03 1.54 7.55 -2.39 -0.02 1.52 16 32 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 3.42 5.59 -2.39 -0.01 3.40 16 35 H 0.08 2.57 7.09 -2.39 -0.02 2.55 16 36 H 0.13 3.94 5.52 -2.91 -0.02 3.92 16 37 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 38 H 0.15 2.29 7.09 -2.91 -0.02 2.27 16 39 H 0.07 1.42 7.87 -2.39 -0.02 1.41 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.85 7.39 -2.39 -0.02 0.84 16 43 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.91 7.38 -2.39 -0.02 0.90 16 46 H 0.12 3.85 7.94 -2.91 -0.02 3.83 16 Total: -1.00 -63.71 361.82 6.79 -56.92 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.97 Total: 33.47 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.71 Total: -10.47 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.49 Total: -65.92 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.43 Total: -52.30 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.30 kcal Total: -63.71 6.79 -56.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.861 kcal (2) G-P(sol) polarization free energy of solvation -63.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds