Wall clock time and date at job start Tue Mar 31 2020 10:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46494 * 120.00094 * 2 1 4 4 C 1.50701 * 109.47012 * 269.99841 * 3 2 1 5 5 H 1.08000 * 120.00237 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00217 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00195 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99638 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47157 * 90.00321 * 8 6 4 10 10 H 1.48503 * 109.47099 * 209.99834 * 8 6 4 11 11 H 1.48499 * 109.47338 * 329.99875 * 8 6 4 12 12 C 1.34773 * 119.99746 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00180 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00082 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.47310 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47523 * 180.02562 * 15 14 12 17 17 O 1.42893 * 109.47460 * 179.97438 * 16 15 14 18 18 C 1.42896 * 114.00368 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47376 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.09000 * 109.47019 * 270.00280 * 1 2 3 27 27 H 1.09001 * 109.46933 * 29.99800 * 1 2 3 28 28 H 1.08997 * 109.47140 * 149.99698 * 1 2 3 29 29 H 1.08998 * 109.47539 * 29.99538 * 3 2 1 30 30 H 1.08997 * 109.47528 * 150.00191 * 3 2 1 31 31 H 0.96996 * 120.00000 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47228 * 60.00405 * 14 12 2 33 33 H 1.09004 * 109.47564 * 300.00176 * 14 12 2 34 34 H 1.08998 * 109.47484 * 59.99590 * 15 14 12 35 35 H 1.09001 * 109.46810 * 299.99854 * 15 14 12 36 36 H 1.09006 * 109.46948 * 59.99612 * 16 15 14 37 37 H 1.08998 * 109.47057 * 300.00511 * 16 15 14 38 38 H 1.08995 * 109.47430 * 59.99865 * 18 17 16 39 39 H 1.09004 * 109.46934 * 300.00059 * 18 17 16 40 40 H 1.09005 * 109.47610 * 60.00060 * 19 18 17 41 41 H 1.09000 * 109.47256 * 299.99402 * 19 18 17 42 42 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6729 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9291 -0.2531 9 1 5.1066 3.5081 0.1228 10 1 3.7479 5.3559 -0.6646 11 1 2.8272 3.7592 0.9113 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 6 1.6146 -4.9603 -0.0012 17 8 2.5431 -6.0464 -0.0018 18 6 1.9286 -7.3365 -0.0030 19 6 3.0115 -8.4173 -0.0029 20 6 2.3633 -9.7779 -0.0035 21 6 2.0666 -10.4015 -1.2010 22 6 1.4725 -11.6497 -1.2016 23 6 1.1759 -12.2746 -0.0048 24 6 1.4677 -11.6486 1.1927 25 6 2.0660 -10.4024 1.1933 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0284 0.5137 30 1 3.1500 1.1384 0.5138 31 1 3.8211 4.0840 -3.0900 32 1 0.7584 -2.5298 -0.8902 33 1 0.7590 -2.5303 0.8897 34 1 3.0063 -3.5776 0.8894 35 1 3.0062 -3.5775 -0.8905 36 1 0.9881 -5.0177 -0.8914 37 1 0.9876 -5.0182 0.8885 38 1 1.3087 -7.4429 -0.8932 39 1 1.3081 -7.4442 0.8868 40 1 3.6311 -8.3109 0.8876 41 1 3.6322 -8.3098 -0.8924 42 1 2.2988 -9.9135 -2.1361 43 1 1.2403 -12.1367 -2.1372 44 1 0.7121 -13.2500 -0.0053 45 1 1.2320 -12.1349 2.1277 46 1 2.2985 -9.9155 2.1288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077570378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:24 Heat of formation + Delta-G solvation = -70.677375 kcal Electronic energy + Delta-G solvation = -23279.761883 eV Core-core repulsion = 19748.003502 eV Total energy + Delta-G solvation = -3531.758381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.72056 -39.15466 -38.07127 -34.99014 -34.21097 -33.04570 -32.42170 -31.26206 -29.26776 -28.53369 -26.62593 -25.62206 -23.72452 -22.94724 -22.66554 -21.43405 -20.94635 -18.42533 -17.26626 -16.96305 -16.67423 -16.57624 -16.22883 -15.61181 -15.41276 -15.17822 -15.02989 -14.56820 -14.18703 -13.82809 -13.67075 -13.35997 -13.14783 -12.90515 -12.75505 -12.38946 -12.17812 -12.02334 -11.93744 -11.72521 -11.66813 -11.46772 -11.31515 -11.27569 -11.01598 -10.85895 -10.69715 -10.50026 -10.13188 -9.72045 -9.53168 -9.29449 -9.09785 -8.98722 -8.57719 -7.68416 -6.07535 -4.06230 0.95116 1.02458 3.25686 3.30409 3.36307 3.37810 3.38350 3.53089 3.96637 4.40841 4.45797 4.53511 4.65466 4.77226 4.79306 4.86806 5.00629 5.01816 5.13615 5.16443 5.17184 5.24736 5.25803 5.37531 5.44251 5.50694 5.53023 5.58629 5.60761 5.71141 5.78448 5.80627 5.85534 6.09012 6.14206 6.16337 6.24782 6.27148 6.42202 6.62924 6.71423 6.96274 7.09402 7.35643 7.62541 8.26923 8.48455 8.94306 9.01420 9.52814 11.05894 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.036716 B = 0.001770 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.432778 B =15819.253419 C =15940.631221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.600 5.600 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.506 3.494 13 O -0.540 6.540 14 C -0.135 4.135 15 C -0.103 4.103 16 C 0.065 3.935 17 O -0.387 6.387 18 C 0.069 3.931 19 C -0.081 4.081 20 C -0.080 4.080 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.902 -28.280 7.982 30.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.332 5.332 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.417 6.417 14 C -0.175 4.175 15 C -0.141 4.141 16 C -0.011 4.011 17 O -0.306 6.306 18 C -0.008 4.008 19 C -0.119 4.119 20 C -0.081 4.081 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.981 -28.070 7.874 30.227 hybrid contribution -0.143 0.614 0.499 0.804 sum -8.125 -27.456 8.373 29.832 Atomic orbital electron populations 1.21659 0.80995 1.02994 1.00385 1.47853 1.06260 1.07190 1.71942 1.19655 0.92481 0.80133 0.98327 1.21344 1.36984 1.07127 0.91310 0.90797 1.24869 0.95239 0.97375 0.95608 1.69896 1.41524 1.23544 1.18657 0.86831 0.80137 0.79696 0.82896 1.19895 1.21071 1.19098 1.20303 0.88110 0.85096 0.77227 1.90676 1.13972 1.87244 1.49814 1.21559 0.99145 0.93156 1.03680 1.21218 0.97911 0.89924 1.05038 1.22539 0.91857 0.86779 0.99936 1.87880 1.33794 1.13510 1.95426 1.22391 0.95040 0.83014 1.00312 1.20494 0.97472 0.89370 1.04527 1.19778 0.99025 0.95889 0.93363 1.21136 0.99003 0.95390 0.97738 1.21174 0.98983 0.95366 0.98190 1.21179 1.00410 1.00033 0.92666 1.21167 0.99033 0.95392 0.98166 1.21120 0.99067 0.95427 0.97699 0.93702 0.90628 0.92107 0.95285 0.94556 0.92573 0.89208 0.89521 0.90426 0.90177 0.93319 0.93441 0.93283 0.93361 0.89968 0.89902 0.85853 0.86003 0.86151 0.86034 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.24 59.85 0.61 1.87 16 2 N -0.60 -12.44 2.86 -182.96 -0.52 -12.96 16 3 C 0.21 5.34 4.23 -5.20 -0.02 5.31 16 4 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 5 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 8 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 12 C 0.51 10.32 7.67 -10.99 -0.08 10.23 16 13 O -0.54 -13.48 15.56 5.56 0.09 -13.40 16 14 C -0.14 -1.89 4.25 -27.88 -0.12 -2.01 16 15 C -0.10 -1.45 4.87 -26.73 -0.13 -1.58 16 16 C 0.07 0.73 5.94 37.16 0.22 0.95 16 17 O -0.39 -4.78 10.34 -35.23 -0.36 -5.15 16 18 C 0.07 0.65 5.92 37.15 0.22 0.87 16 19 C -0.08 -0.69 5.71 -27.88 -0.16 -0.85 16 20 C -0.08 -0.66 5.13 -104.62 -0.54 -1.19 16 21 C -0.11 -0.88 9.70 -39.58 -0.38 -1.27 16 22 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 23 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 25 C -0.12 -0.87 9.70 -39.58 -0.38 -1.26 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 33 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 41 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -35.52 383.60 -9.10 -44.62 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.78 Total: -2.51 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.40 Total: -6.36 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.25 Total: -40.15 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.28 Total: -18.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.52 -9.10 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077570378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.055 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds