Wall clock time and date at job start Tue Mar 31 2020 10:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46494 * 120.00094 * 2 1 4 4 C 1.50701 * 109.47012 * 269.99841 * 3 2 1 5 5 H 1.08000 * 120.00237 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00217 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00195 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99638 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47157 * 90.00321 * 8 6 4 10 10 H 1.48503 * 109.47099 * 209.99834 * 8 6 4 11 11 H 1.48499 * 109.47338 * 329.99875 * 8 6 4 12 12 C 1.34773 * 119.99746 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00180 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00082 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.47310 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47523 * 180.02562 * 15 14 12 17 17 O 1.42893 * 109.47460 * 179.97438 * 16 15 14 18 18 C 1.42896 * 114.00368 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47376 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.09000 * 109.47019 * 270.00280 * 1 2 3 27 27 H 1.09001 * 109.46933 * 29.99800 * 1 2 3 28 28 H 1.08997 * 109.47140 * 149.99698 * 1 2 3 29 29 H 1.08998 * 109.47539 * 29.99538 * 3 2 1 30 30 H 1.08997 * 109.47528 * 150.00191 * 3 2 1 31 31 H 0.96996 * 120.00000 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47228 * 60.00405 * 14 12 2 33 33 H 1.09004 * 109.47564 * 300.00176 * 14 12 2 34 34 H 1.08998 * 109.47484 * 59.99590 * 15 14 12 35 35 H 1.09001 * 109.46810 * 299.99854 * 15 14 12 36 36 H 1.09006 * 109.46948 * 59.99612 * 16 15 14 37 37 H 1.08998 * 109.47057 * 300.00511 * 16 15 14 38 38 H 1.08995 * 109.47430 * 59.99865 * 18 17 16 39 39 H 1.09004 * 109.46934 * 300.00059 * 18 17 16 40 40 H 1.09005 * 109.47610 * 60.00060 * 19 18 17 41 41 H 1.09000 * 109.47256 * 299.99402 * 19 18 17 42 42 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6729 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9291 -0.2531 9 1 5.1066 3.5081 0.1228 10 1 3.7479 5.3559 -0.6646 11 1 2.8272 3.7592 0.9113 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 6 1.6146 -4.9603 -0.0012 17 8 2.5431 -6.0464 -0.0018 18 6 1.9286 -7.3365 -0.0030 19 6 3.0115 -8.4173 -0.0029 20 6 2.3633 -9.7779 -0.0035 21 6 2.0666 -10.4015 -1.2010 22 6 1.4725 -11.6497 -1.2016 23 6 1.1759 -12.2746 -0.0048 24 6 1.4677 -11.6486 1.1927 25 6 2.0660 -10.4024 1.1933 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6085 2.0284 0.5137 30 1 3.1500 1.1384 0.5138 31 1 3.8211 4.0840 -3.0900 32 1 0.7584 -2.5298 -0.8902 33 1 0.7590 -2.5303 0.8897 34 1 3.0063 -3.5776 0.8894 35 1 3.0062 -3.5775 -0.8905 36 1 0.9881 -5.0177 -0.8914 37 1 0.9876 -5.0182 0.8885 38 1 1.3087 -7.4429 -0.8932 39 1 1.3081 -7.4442 0.8868 40 1 3.6311 -8.3109 0.8876 41 1 3.6322 -8.3098 -0.8924 42 1 2.2988 -9.9135 -2.1361 43 1 1.2403 -12.1367 -2.1372 44 1 0.7121 -13.2500 -0.0053 45 1 1.2320 -12.1349 2.1277 46 1 2.2985 -9.9155 2.1288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077570378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:23 Heat of formation + Delta-G solvation = -92.766675 kcal Electronic energy + Delta-G solvation = -23280.719747 eV Core-core repulsion = 19748.003502 eV Total energy + Delta-G solvation = -3532.716245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72926 -40.25333 -38.93961 -36.67332 -35.15632 -34.67272 -33.84686 -31.76646 -30.78111 -29.58173 -27.79156 -27.07733 -24.54487 -24.23372 -23.45696 -22.55893 -21.70943 -19.94596 -19.15946 -18.07504 -17.66186 -17.45674 -17.36310 -16.91045 -16.65686 -16.11099 -15.88746 -15.79799 -15.45506 -14.94846 -14.71573 -14.28525 -14.22479 -13.95603 -13.88800 -13.64493 -13.60649 -13.40129 -13.30530 -12.89390 -12.79114 -12.51849 -12.42960 -12.39591 -12.03366 -11.97266 -11.89105 -11.85488 -11.75544 -11.67981 -10.84476 -10.65776 -10.53651 -9.81652 -9.63655 -9.37896 -8.35264 -6.40464 0.41580 0.50373 1.31595 1.36209 1.44544 1.82517 2.27387 2.30270 2.68884 2.96091 2.99171 3.70652 3.89696 3.93002 4.00937 4.11037 4.19909 4.20370 4.28993 4.32650 4.38241 4.46914 4.49214 4.53888 4.56143 4.63356 4.65360 4.68795 4.70218 4.84615 4.93710 4.95883 4.98725 5.02013 5.15252 5.18682 5.19094 5.29862 5.45434 5.58234 5.63327 5.63808 5.71747 6.12729 6.23062 6.29069 6.60806 6.72323 7.20639 7.44643 8.81726 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.036716 B = 0.001770 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.432778 B =15819.253419 C =15940.631221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.222 3.778 4 C -0.539 4.539 5 H 0.028 0.972 6 C 0.009 3.991 7 N -0.945 5.945 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.237 1.237 12 C 0.491 3.509 13 O -0.600 6.600 14 C -0.118 4.118 15 C -0.100 4.100 16 C 0.071 3.929 17 O -0.414 6.414 18 C 0.069 3.931 19 C -0.077 4.077 20 C -0.092 4.092 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.269 0.731 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 -29.522 10.088 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.341 5.341 3 C 0.099 3.901 4 C -0.577 4.577 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.585 5.585 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.160 1.160 12 C 0.281 3.719 13 O -0.482 6.482 14 C -0.158 4.158 15 C -0.138 4.138 16 C -0.005 4.005 17 O -0.334 6.334 18 C -0.007 4.007 19 C -0.115 4.115 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.144 4.144 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.387 -29.336 9.987 32.684 hybrid contribution 0.565 0.906 -0.243 1.095 sum -9.823 -28.430 9.744 31.618 Atomic orbital electron populations 1.22009 0.77340 1.04152 1.03103 1.48009 1.08625 1.05914 1.71560 1.19325 0.92757 0.82834 0.95196 1.21598 1.36871 1.06742 0.92504 0.95378 1.25891 0.95287 0.99015 0.98718 1.70049 1.42718 1.24475 1.21297 0.85684 0.79483 0.77743 0.79833 1.20378 1.19836 1.15999 1.21511 0.87885 0.86945 0.75566 1.90642 1.16899 1.88250 1.52411 1.21546 0.98694 0.88728 1.06817 1.21134 0.97904 0.92201 1.02557 1.22493 0.91279 0.84830 1.01947 1.87845 1.35158 1.14778 1.95665 1.22503 0.95285 0.81805 1.01095 1.20437 0.97299 0.89709 1.04039 1.19796 0.99748 0.95761 0.93926 1.21313 0.99449 0.96003 0.97891 1.21448 0.98649 0.95171 0.99239 1.21505 1.00022 1.00861 0.92473 1.21459 0.98572 0.95189 0.99194 1.21315 0.99306 0.95967 0.97860 0.90015 0.91831 0.88762 0.93098 0.96579 0.92255 0.86675 0.85194 0.92298 0.93510 0.91696 0.90824 0.92668 0.92227 0.90267 0.90605 0.85409 0.84366 0.84144 0.84186 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 10.24 127.77 1.31 3.35 16 2 N -0.61 -24.63 2.86 -851.14 -2.43 -27.07 16 3 C 0.22 10.97 4.23 85.63 0.36 11.33 16 4 C -0.54 -32.34 9.94 25.60 0.25 -32.08 16 5 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 6 C 0.01 0.53 5.47 84.66 0.46 0.99 16 7 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 8 Si 0.95 45.18 27.47 68.60 1.88 47.06 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 12 C 0.49 19.86 7.67 87.66 0.67 20.54 16 13 O -0.60 -31.10 15.56 -3.03 -0.05 -31.14 16 14 C -0.12 -3.01 4.25 29.85 0.13 -2.88 16 15 C -0.10 -2.76 4.87 30.59 0.15 -2.61 16 16 C 0.07 1.43 5.94 71.98 0.43 1.85 16 17 O -0.41 -9.89 10.34 -148.98 -1.54 -11.43 16 18 C 0.07 1.21 5.92 71.98 0.43 1.64 16 19 C -0.08 -1.30 5.71 29.85 0.17 -1.13 16 20 C -0.09 -1.44 5.13 -19.86 -0.10 -1.54 16 21 C -0.13 -1.89 9.70 22.27 0.22 -1.68 16 22 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 23 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 24 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 25 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 28 H 0.09 1.90 6.44 -2.39 -0.02 1.88 16 29 H 0.05 2.29 7.13 -2.39 -0.02 2.28 16 30 H 0.02 0.86 6.85 -2.39 -0.02 0.85 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.12 2.41 7.40 -2.39 -0.02 2.39 16 33 H 0.13 2.25 8.11 -2.38 -0.02 2.23 16 34 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 36 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.08 1.33 8.09 -2.38 -0.02 1.31 16 41 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 42 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 45 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -82.46 383.60 4.40 -78.06 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.87 Total: 12.58 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.36 Total: -7.73 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.13 Total: -87.41 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -1.59 Total: -42.57 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -82.46 4.40 -78.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077570378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.703 kcal (2) G-P(sol) polarization free energy of solvation -82.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds