Wall clock time and date at job start Tue Mar 31 2020 08:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47072 * 2 1 4 4 C 1.46500 * 119.99688 * 269.99424 * 3 2 1 5 5 C 1.50700 * 109.47395 * 270.00080 * 4 3 2 6 6 H 1.08002 * 119.99822 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00017 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46947 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47180 * 120.00198 * 9 7 5 12 12 H 1.48502 * 109.46868 * 240.00011 * 9 7 5 13 13 C 1.34779 * 120.00193 * 90.00117 * 3 2 1 14 14 O 1.21278 * 119.99957 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99862 * 359.97438 * 13 3 2 16 16 C 1.53004 * 109.47132 * 180.02562 * 15 13 3 17 17 H 1.08998 * 109.46845 * 54.99785 * 16 15 13 18 18 C 1.52997 * 109.46913 * 295.00114 * 16 15 13 19 19 C 1.50697 * 109.47165 * 174.99796 * 16 15 13 20 20 C 1.38271 * 119.94043 * 60.32604 * 19 16 15 21 21 C 1.38147 * 120.05186 * 180.27986 * 20 19 16 22 22 C 1.38736 * 119.94540 * 359.41290 * 21 20 19 23 23 O 1.35892 * 120.05957 * 180.26040 * 22 21 20 24 24 C 1.42899 * 117.00396 * 180.02562 * 23 22 21 25 25 C 1.38740 * 119.88595 * 0.28283 * 22 21 20 26 26 C 1.38146 * 119.94197 * 359.97438 * 25 22 21 27 27 H 1.08997 * 109.46717 * 60.00553 * 1 2 3 28 28 H 1.08997 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46910 * 300.00086 * 1 2 3 30 30 H 1.08995 * 109.47562 * 239.99535 * 2 1 3 31 31 H 1.09008 * 109.47152 * 119.99427 * 2 1 3 32 32 H 1.08997 * 109.46992 * 30.00461 * 4 3 2 33 33 H 1.09003 * 109.46975 * 150.00122 * 4 3 2 34 34 H 0.97003 * 119.99883 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47454 * 60.00520 * 15 13 3 36 36 H 1.09005 * 109.46965 * 300.00256 * 15 13 3 37 37 H 1.09000 * 109.47122 * 59.99763 * 18 16 15 38 38 H 1.08999 * 109.47351 * 179.97438 * 18 16 15 39 39 H 1.09009 * 109.47314 * 299.99911 * 18 16 15 40 40 H 1.07995 * 119.98029 * 359.96940 * 20 19 16 41 41 H 1.08002 * 120.03108 * 179.69762 * 21 20 19 42 42 H 1.08997 * 109.47463 * 300.00468 * 24 23 22 43 43 H 1.09002 * 109.46662 * 59.99805 * 24 23 22 44 44 H 1.09005 * 109.47349 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.02463 * 180.02562 * 25 22 21 46 46 H 1.08006 * 119.96944 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3430 1.2309 -1.0956 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6181 9 14 5.9133 2.0953 -3.4175 10 1 6.6005 1.2394 -2.4174 11 1 5.9204 1.4160 -4.7380 12 1 6.6211 3.3963 -3.5263 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 6 2.3223 2.2440 3.6352 17 1 1.7567 3.1696 3.5279 18 6 3.8198 2.5576 3.6272 19 6 1.9552 1.5790 4.9367 20 6 2.5547 0.3856 5.2951 21 6 2.2156 -0.2289 6.4850 22 6 1.2818 0.3584 7.3263 23 8 0.9505 -0.2415 8.4998 24 6 -0.0186 0.4198 9.3156 25 6 0.6864 1.5590 6.9673 26 6 1.0250 2.1668 5.7738 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6753 3.5159 -4.4441 35 1 2.6212 0.4188 2.5303 36 1 0.9432 1.0126 2.5298 37 1 4.0852 3.0385 2.6858 38 1 4.0555 3.2258 4.4554 39 1 4.3854 1.6319 3.7344 40 1 3.2848 -0.0690 4.6420 41 1 2.6805 -1.1635 6.7623 42 1 0.3488 1.4097 9.5862 43 1 -0.9529 0.5178 8.7627 44 1 -0.1915 -0.1638 10.2199 45 1 -0.0404 2.0184 7.6207 46 1 0.5615 3.1013 5.4937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078388340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:47 Heat of formation + Delta-G solvation = -62.606554 kcal Electronic energy + Delta-G solvation = -24962.100141 eV Core-core repulsion = 21430.691737 eV Total energy + Delta-G solvation = -3531.408404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 5.38 seconds Orbital eigenvalues (eV) -40.38431 -39.28185 -37.90194 -35.41574 -34.24860 -32.75042 -31.25232 -30.07490 -29.40819 -28.22060 -27.38908 -26.35799 -23.41066 -22.93978 -22.81499 -22.22719 -20.05083 -18.34958 -18.10921 -16.70698 -16.36506 -16.28974 -15.96280 -15.46471 -15.15510 -14.77181 -14.52307 -14.20019 -13.94838 -13.64819 -13.35968 -13.23415 -13.17305 -12.81800 -12.54176 -12.45995 -12.23572 -12.00000 -11.67818 -11.65762 -11.30690 -11.19010 -11.12553 -10.85826 -10.82158 -10.78968 -10.62006 -10.54726 -10.37231 -10.08813 -9.58391 -9.10166 -8.75782 -8.41896 -8.16796 -7.60334 -6.02338 -4.06714 1.23867 1.32652 3.06181 3.30667 3.38033 3.41528 3.51003 3.64316 4.00740 4.46316 4.60973 4.72423 4.81180 4.84275 4.84525 5.12057 5.15096 5.24938 5.28611 5.30956 5.34094 5.37636 5.43262 5.53366 5.66211 5.73585 5.82437 5.89074 5.89797 6.01308 6.11323 6.14161 6.20948 6.26827 6.29427 6.37503 6.52858 6.64678 6.69047 6.78894 7.11854 7.21752 7.48599 7.60661 7.94798 8.26724 8.49394 8.93800 9.16833 9.58528 11.05704 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025048 B = 0.002870 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.594292 B = 9752.487282 C =10113.127510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.245 3.755 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.540 6.540 15 C -0.133 4.133 16 C -0.032 4.032 17 H 0.084 0.916 18 C -0.149 4.149 19 C -0.103 4.103 20 C -0.075 4.075 21 C -0.149 4.149 22 C 0.115 3.885 23 O -0.321 6.321 24 C 0.028 3.972 25 C -0.206 4.206 26 C -0.077 4.077 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -7.514 21.515 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.126 3.874 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.418 6.418 15 C -0.173 4.173 16 C -0.050 4.050 17 H 0.102 0.898 18 C -0.206 4.206 19 C -0.103 4.103 20 C -0.093 4.093 21 C -0.168 4.168 22 C 0.070 3.930 23 O -0.235 6.235 24 C -0.067 4.067 25 C -0.225 4.225 26 C -0.096 4.096 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.143 0.857 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.257 -6.982 21.400 23.652 hybrid contribution 0.671 -0.044 -0.348 0.757 sum -6.586 -7.027 21.052 23.151 Atomic orbital electron populations 1.22217 0.96917 1.01337 1.02260 1.21396 0.93429 0.84339 1.02578 1.48274 1.63735 1.13198 1.07844 1.19251 0.96179 0.93640 0.78308 1.21473 0.96936 1.31648 1.06094 0.92468 1.24941 0.97799 0.95007 0.96457 1.69945 1.35557 1.33612 1.14345 0.86461 0.84742 0.78031 0.78296 1.19810 1.21023 1.20908 1.20308 0.78339 0.86970 0.85123 1.90624 1.45851 1.18179 1.87169 1.21810 1.02959 0.99477 0.93068 1.19829 0.98300 0.97786 0.89118 0.89784 1.21968 0.93757 1.01200 1.03651 1.19939 0.97584 0.95769 0.97021 1.20874 0.98532 0.94594 0.95267 1.20410 0.99844 1.01773 0.94770 1.19022 0.95584 0.92238 0.86164 1.86049 1.58611 1.49106 1.29708 1.23022 0.90985 0.98301 0.94380 1.21190 1.04572 0.96950 0.99782 1.20906 0.96325 0.99290 0.93035 0.92124 0.92264 0.93061 0.90116 0.91719 0.95185 0.93940 0.92832 0.89563 0.89673 0.89573 0.93263 0.93398 0.85246 0.85395 0.92740 0.92714 0.88424 0.85726 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.53 2.46 -175.06 -0.43 -12.96 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.51 10.23 7.39 -10.99 -0.08 10.15 16 14 O -0.54 -13.07 13.55 5.56 0.08 -13.00 16 15 C -0.13 -1.95 3.47 -27.88 -0.10 -2.05 16 16 C -0.03 -0.44 2.21 -91.77 -0.20 -0.64 16 17 H 0.08 1.26 7.68 -51.93 -0.40 0.87 16 18 C -0.15 -2.22 8.74 37.16 0.32 -1.89 16 19 C -0.10 -1.25 4.78 -104.60 -0.50 -1.75 16 20 C -0.07 -0.84 8.75 -39.60 -0.35 -1.19 16 21 C -0.15 -1.65 9.99 -39.43 -0.39 -2.04 16 22 C 0.11 1.27 6.69 -39.21 -0.26 1.01 16 23 O -0.32 -3.32 10.50 -19.40 -0.20 -3.52 16 24 C 0.03 0.18 9.81 101.05 0.99 1.17 16 25 C -0.21 -2.13 9.04 -39.43 -0.36 -2.49 16 26 C -0.08 -0.87 9.66 -39.61 -0.38 -1.25 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.06 0.87 6.44 -51.92 -0.33 0.53 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 35 H 0.09 1.14 6.84 -51.93 -0.36 0.78 16 36 H 0.08 1.12 7.18 -51.93 -0.37 0.74 16 37 H 0.09 1.59 5.95 -51.93 -0.31 1.28 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.64 7.37 -51.92 -0.38 0.26 16 40 H 0.13 1.32 7.15 -52.49 -0.38 0.94 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 43 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.12 1.01 6.30 -52.49 -0.33 0.68 16 46 H 0.12 1.24 7.94 -52.48 -0.42 0.82 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -33.18 373.07 -7.95 -41.13 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.33 Total: 0.10 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.40 Total: -8.32 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.31 Total: -38.93 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.13 Total: -16.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.18 -7.95 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078388340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.475 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.38 seconds