Wall clock time and date at job start Tue Mar 31 2020 08:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47072 * 2 1 4 4 C 1.46500 * 119.99688 * 269.99424 * 3 2 1 5 5 C 1.50700 * 109.47395 * 270.00080 * 4 3 2 6 6 H 1.08002 * 119.99822 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00017 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46947 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47180 * 120.00198 * 9 7 5 12 12 H 1.48502 * 109.46868 * 240.00011 * 9 7 5 13 13 C 1.34779 * 120.00193 * 90.00117 * 3 2 1 14 14 O 1.21278 * 119.99957 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99862 * 359.97438 * 13 3 2 16 16 C 1.53004 * 109.47132 * 180.02562 * 15 13 3 17 17 H 1.08998 * 109.46845 * 54.99785 * 16 15 13 18 18 C 1.52997 * 109.46913 * 295.00114 * 16 15 13 19 19 C 1.50697 * 109.47165 * 174.99796 * 16 15 13 20 20 C 1.38271 * 119.94043 * 60.32604 * 19 16 15 21 21 C 1.38147 * 120.05186 * 180.27986 * 20 19 16 22 22 C 1.38736 * 119.94540 * 359.41290 * 21 20 19 23 23 O 1.35892 * 120.05957 * 180.26040 * 22 21 20 24 24 C 1.42899 * 117.00396 * 180.02562 * 23 22 21 25 25 C 1.38740 * 119.88595 * 0.28283 * 22 21 20 26 26 C 1.38146 * 119.94197 * 359.97438 * 25 22 21 27 27 H 1.08997 * 109.46717 * 60.00553 * 1 2 3 28 28 H 1.08997 * 109.46839 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46910 * 300.00086 * 1 2 3 30 30 H 1.08995 * 109.47562 * 239.99535 * 2 1 3 31 31 H 1.09008 * 109.47152 * 119.99427 * 2 1 3 32 32 H 1.08997 * 109.46992 * 30.00461 * 4 3 2 33 33 H 1.09003 * 109.46975 * 150.00122 * 4 3 2 34 34 H 0.97003 * 119.99883 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47454 * 60.00520 * 15 13 3 36 36 H 1.09005 * 109.46965 * 300.00256 * 15 13 3 37 37 H 1.09000 * 109.47122 * 59.99763 * 18 16 15 38 38 H 1.08999 * 109.47351 * 179.97438 * 18 16 15 39 39 H 1.09009 * 109.47314 * 299.99911 * 18 16 15 40 40 H 1.07995 * 119.98029 * 359.96940 * 20 19 16 41 41 H 1.08002 * 120.03108 * 179.69762 * 21 20 19 42 42 H 1.08997 * 109.47463 * 300.00468 * 24 23 22 43 43 H 1.09002 * 109.46662 * 59.99805 * 24 23 22 44 44 H 1.09005 * 109.47349 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.02463 * 180.02562 * 25 22 21 46 46 H 1.08006 * 119.96944 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3430 1.2309 -1.0956 7 6 4.1492 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6181 9 14 5.9133 2.0953 -3.4175 10 1 6.6005 1.2394 -2.4174 11 1 5.9204 1.4160 -4.7380 12 1 6.6211 3.3963 -3.5263 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 6 2.3223 2.2440 3.6352 17 1 1.7567 3.1696 3.5279 18 6 3.8198 2.5576 3.6272 19 6 1.9552 1.5790 4.9367 20 6 2.5547 0.3856 5.2951 21 6 2.2156 -0.2289 6.4850 22 6 1.2818 0.3584 7.3263 23 8 0.9505 -0.2415 8.4998 24 6 -0.0186 0.4198 9.3156 25 6 0.6864 1.5590 6.9673 26 6 1.0250 2.1668 5.7738 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6753 3.5159 -4.4441 35 1 2.6212 0.4188 2.5303 36 1 0.9432 1.0126 2.5298 37 1 4.0852 3.0385 2.6858 38 1 4.0555 3.2258 4.4554 39 1 4.3854 1.6319 3.7344 40 1 3.2848 -0.0690 4.6420 41 1 2.6805 -1.1635 6.7623 42 1 0.3488 1.4097 9.5862 43 1 -0.9529 0.5178 8.7627 44 1 -0.1915 -0.1638 10.2199 45 1 -0.0404 2.0184 7.6207 46 1 0.5615 3.1013 5.4937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078388340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:36 Heat of formation + Delta-G solvation = -81.660676 kcal Electronic energy + Delta-G solvation = -24962.926390 eV Core-core repulsion = 21430.691737 eV Total energy + Delta-G solvation = -3532.234652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 7.95 seconds Orbital eigenvalues (eV) -41.28193 -40.67164 -38.82415 -36.99578 -35.43373 -34.83020 -32.04263 -31.61640 -30.44329 -29.55388 -28.08409 -28.03330 -25.06275 -24.24251 -23.67622 -23.48411 -21.12773 -19.63232 -19.07737 -18.60948 -17.98016 -17.35701 -16.91847 -16.59110 -16.40189 -16.15374 -15.93884 -15.47378 -14.94267 -14.66831 -14.53000 -14.44943 -14.28327 -14.19302 -13.89914 -13.63586 -13.32586 -13.28894 -13.10019 -12.94006 -12.79138 -12.66034 -12.53398 -12.25868 -12.09866 -12.01851 -11.96841 -11.75573 -11.68272 -11.62553 -11.45775 -10.64119 -10.41161 -9.90112 -9.37494 -9.00100 -8.21158 -6.35771 0.43930 0.48138 1.36195 1.38495 1.50411 1.92442 2.33345 2.43073 2.49076 2.83729 3.08057 3.64664 3.79734 3.97477 4.07719 4.11501 4.14016 4.24520 4.34488 4.42244 4.44870 4.49805 4.51882 4.59315 4.65653 4.72026 4.74679 4.81051 4.87731 4.97600 5.01041 5.06365 5.08064 5.13886 5.25178 5.27948 5.33108 5.41094 5.42357 5.53839 5.61556 5.79366 5.85646 5.90874 6.09062 6.49749 6.72768 6.87538 7.30710 7.57350 8.85887 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025048 B = 0.002870 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.594292 B = 9752.487282 C =10113.127510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.590 6.590 15 C -0.117 4.117 16 C -0.024 4.024 17 H 0.067 0.933 18 C -0.145 4.145 19 C -0.112 4.112 20 C -0.075 4.075 21 C -0.158 4.158 22 C 0.109 3.891 23 O -0.336 6.336 24 C 0.019 3.981 25 C -0.206 4.206 26 C -0.084 4.084 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.018 0.982 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.146 0.854 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 -9.770 23.602 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.140 3.860 5 C -0.576 4.576 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.471 6.471 15 C -0.157 4.157 16 C -0.043 4.043 17 H 0.085 0.915 18 C -0.202 4.202 19 C -0.113 4.113 20 C -0.093 4.093 21 C -0.176 4.176 22 C 0.064 3.936 23 O -0.250 6.250 24 C -0.076 4.076 25 C -0.225 4.225 26 C -0.102 4.102 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.036 0.964 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.164 0.836 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.364 -9.282 23.512 26.329 hybrid contribution 0.628 0.670 -0.907 1.290 sum -6.736 -8.612 22.605 25.111 Atomic orbital electron populations 1.22150 0.94801 1.03399 1.01565 1.21721 0.95159 0.81535 1.03817 1.48318 1.64043 1.15051 1.06350 1.18673 0.95192 0.91485 0.80637 1.21732 0.97838 1.31678 1.06322 0.92856 1.25874 1.02375 0.94583 0.96524 1.70066 1.37687 1.34411 1.14840 0.85373 0.79086 0.77981 0.78403 1.18991 1.19494 1.20843 1.21342 0.76949 0.86620 0.86534 1.90604 1.47871 1.20637 1.88006 1.21791 1.04880 0.99531 0.89474 1.19677 0.97251 0.97224 0.90148 0.91488 1.21889 0.94931 1.01730 1.01641 1.19709 0.98866 0.96436 0.96258 1.20971 0.98512 0.94206 0.95606 1.20610 1.00001 1.02313 0.94710 1.19229 0.95461 0.92393 0.86525 1.86035 1.59532 1.49853 1.29604 1.23312 0.90544 0.99007 0.94701 1.21392 1.04731 0.96726 0.99639 1.21058 0.96194 0.99649 0.93296 0.94431 0.88733 0.92176 0.91196 0.88118 0.96370 0.98644 0.92494 0.87170 0.87241 0.93686 0.92445 0.91856 0.84177 0.84226 0.91953 0.91846 0.86405 0.83639 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.33 16 2 C 0.10 3.07 5.93 86.38 0.51 3.58 16 3 N -0.61 -25.83 2.46 -826.15 -2.03 -27.86 16 4 C 0.26 14.35 5.16 85.63 0.44 14.79 16 5 C -0.54 -31.30 9.39 25.60 0.24 -31.06 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.29 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 9 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 C 0.50 20.40 7.39 87.65 0.65 21.05 16 14 O -0.59 -30.07 13.55 -3.02 -0.04 -30.11 16 15 C -0.12 -3.25 3.47 29.85 0.10 -3.15 16 16 C -0.02 -0.66 2.21 -11.54 -0.03 -0.68 16 17 H 0.07 2.04 7.68 -2.39 -0.02 2.03 16 18 C -0.14 -4.30 8.74 71.98 0.63 -3.68 16 19 C -0.11 -2.51 4.78 -19.85 -0.09 -2.60 16 20 C -0.08 -1.50 8.75 22.26 0.19 -1.30 16 21 C -0.16 -3.08 9.99 22.37 0.22 -2.86 16 22 C 0.11 2.15 6.69 22.51 0.15 2.30 16 23 O -0.34 -6.11 10.50 -92.33 -0.97 -7.08 16 24 C 0.02 0.19 9.81 113.37 1.11 1.30 16 25 C -0.21 -3.76 9.04 22.37 0.20 -3.56 16 26 C -0.08 -1.72 9.66 22.25 0.22 -1.50 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.41 7.22 -2.39 -0.02 1.39 16 30 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 31 H 0.10 2.37 6.44 -2.38 -0.02 2.35 16 32 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 33 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.11 2.56 6.84 -2.39 -0.02 2.55 16 36 H 0.11 2.55 7.18 -2.38 -0.02 2.53 16 37 H 0.04 1.72 5.95 -2.39 -0.01 1.71 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.63 7.37 -2.38 -0.02 1.62 16 40 H 0.14 2.42 7.15 -2.91 -0.02 2.40 16 41 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 43 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 44 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.15 1.93 6.30 -2.91 -0.02 1.91 16 46 H 0.13 2.43 7.94 -2.91 -0.02 2.41 16 Total: -1.00 -75.67 373.07 5.98 -69.69 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.96 Total: 14.61 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.75 Total: -9.94 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -1.74 Total: -84.65 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.01 Total: -37.19 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -75.67 5.98 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078388340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.967 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.95 seconds