Wall clock time and date at job start Tue Mar 31 2020 08:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00331 * 3 2 1 5 5 C 1.50702 * 109.46904 * 269.99929 * 4 3 2 6 6 H 1.07993 * 120.00490 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99735 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99825 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47614 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47277 * 119.99668 * 9 7 5 12 12 H 1.48506 * 109.47103 * 239.99349 * 9 7 5 13 13 C 1.34779 * 119.99707 * 90.00663 * 3 2 1 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 3 2 16 16 O 1.42905 * 109.46972 * 180.02562 * 15 13 3 17 17 C 1.35896 * 117.00039 * 180.02562 * 16 15 13 18 18 C 1.38732 * 120.05640 * 269.72915 * 17 16 15 19 19 C 1.50700 * 120.02398 * 359.97438 * 18 17 16 20 20 C 1.38145 * 119.94666 * 179.69826 * 18 17 16 21 21 C 1.38271 * 120.04936 * 0.59292 * 20 18 17 22 22 C 1.50703 * 119.93850 * 179.69782 * 21 20 18 23 23 C 1.38260 * 120.11838 * 359.68035 * 21 20 18 24 24 C 1.38149 * 120.04928 * 0.02562 * 23 21 20 25 25 C 1.50703 * 120.02372 * 180.02562 * 24 23 21 26 26 H 1.09001 * 109.47495 * 59.99636 * 1 2 3 27 27 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46447 * 299.99424 * 1 2 3 29 29 H 1.09002 * 109.47160 * 240.00485 * 2 1 3 30 30 H 1.09001 * 109.47495 * 120.00364 * 2 1 3 31 31 H 1.08991 * 109.47410 * 30.00046 * 4 3 2 32 32 H 1.09007 * 109.47039 * 150.00320 * 4 3 2 33 33 H 0.97004 * 119.99848 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47247 * 60.00371 * 15 13 3 35 35 H 1.09001 * 109.47358 * 299.99798 * 15 13 3 36 36 H 1.08997 * 109.46980 * 90.00923 * 19 18 17 37 37 H 1.09006 * 109.47268 * 210.00138 * 19 18 17 38 38 H 1.08999 * 109.47428 * 330.00172 * 19 18 17 39 39 H 1.07997 * 119.97554 * 180.31015 * 20 18 17 40 40 H 1.08995 * 109.47432 * 269.97706 * 22 21 20 41 41 H 1.08998 * 109.47163 * 29.98181 * 22 21 20 42 42 H 1.08999 * 109.46845 * 149.97670 * 22 21 20 43 43 H 1.08001 * 119.97642 * 180.02562 * 23 21 20 44 44 H 1.09001 * 109.46901 * 269.97262 * 25 24 23 45 45 H 1.09003 * 109.47267 * 29.97904 * 25 24 23 46 46 H 1.09008 * 109.46921 * 149.97760 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6175 9 14 5.9132 2.0966 -3.4171 10 1 6.6007 1.2405 -2.4172 11 1 5.9202 1.4184 -4.7382 12 1 6.6213 3.3975 -3.5248 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3006 2.1818 3.5585 17 6 2.1276 1.6920 4.8143 18 6 0.9087 1.8464 5.4585 19 6 -0.2251 2.5581 4.7664 20 6 0.7333 1.3422 6.7326 21 6 1.7753 0.6948 7.3706 22 6 1.5834 0.1517 8.7632 23 6 2.9929 0.5446 6.7330 24 6 3.1713 1.0418 5.4565 25 6 4.4986 0.8772 4.7618 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.5816 1.6879 -2.0283 32 1 2.0955 3.1412 -1.1383 33 1 3.6753 3.5172 -4.4435 34 1 2.6213 0.4185 2.5302 35 1 0.9433 1.0124 2.5300 36 1 -0.8195 1.8361 4.2066 37 1 -0.8543 3.0481 5.5097 38 1 0.1781 3.3050 4.0826 39 1 -0.2170 1.4577 7.2326 40 1 1.8533 0.9161 9.4917 41 1 0.5398 -0.1306 8.9024 42 1 2.2181 -0.7234 8.9025 43 1 3.8052 0.0382 7.2333 44 1 5.1350 1.7330 4.9869 45 1 4.9806 -0.0360 5.1109 46 1 4.3400 0.8156 3.6851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080113726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:09 Heat of formation + Delta-G solvation = -82.227647 kcal Electronic energy + Delta-G solvation = -25342.296501 eV Core-core repulsion = 21810.037263 eV Total energy + Delta-G solvation = -3532.259238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.49850 -40.55106 -38.40112 -36.98875 -34.94889 -34.56142 -33.66181 -31.72436 -30.51165 -28.90139 -28.39006 -27.64788 -26.61302 -24.81730 -24.08991 -21.93378 -21.61667 -20.22239 -18.96901 -18.63623 -17.91331 -17.72333 -17.23938 -16.45771 -16.35486 -15.61368 -15.40593 -14.96650 -14.92378 -14.81016 -14.61471 -14.16946 -14.05871 -14.02507 -13.91923 -13.77994 -13.60579 -13.55728 -13.30514 -13.22666 -13.07852 -12.73649 -12.70254 -12.52254 -12.25815 -12.18221 -12.13508 -11.95296 -11.92743 -11.71196 -10.92132 -10.66524 -10.64648 -9.55499 -9.52406 -9.29493 -8.24428 -6.39042 0.15524 0.36368 1.35017 1.38011 1.49427 1.67681 1.88315 2.36801 2.58180 3.02323 3.06242 3.60008 3.80479 3.81497 3.90900 3.94004 4.05131 4.16244 4.34669 4.38210 4.42439 4.49811 4.54855 4.59010 4.68520 4.70408 4.72299 4.77741 4.89478 4.91402 4.94444 4.97412 5.01973 5.09890 5.18573 5.26286 5.32407 5.35787 5.45030 5.54316 5.59251 5.65164 5.79365 5.88403 6.03655 6.49607 6.67682 6.71931 7.24252 7.39572 8.83250 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.003350 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.666030 B = 8356.557545 C = 8980.220502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.498 3.502 14 O -0.583 6.583 15 C 0.067 3.933 16 O -0.333 6.333 17 C 0.053 3.947 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.084 4.084 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.104 4.104 25 C -0.112 4.112 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.029 0.971 32 H -0.005 1.005 33 H 0.268 0.732 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.148 0.852 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 -12.506 23.156 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.330 5.330 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.286 3.714 14 O -0.463 6.463 15 C -0.010 4.010 16 O -0.250 6.250 17 C 0.010 3.990 18 C -0.103 4.103 19 C -0.170 4.170 20 C -0.136 4.136 21 C -0.084 4.084 22 C -0.167 4.167 23 C -0.137 4.137 24 C -0.104 4.104 25 C -0.168 4.168 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.167 0.833 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.165 0.835 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.746 -11.654 22.916 26.580 hybrid contribution 0.891 0.457 -1.086 1.477 sum -5.855 -11.197 21.831 25.224 Atomic orbital electron populations 1.22174 0.94275 1.03784 1.01804 1.21837 0.95602 0.81032 1.04197 1.48216 1.63850 1.15235 1.05689 1.18754 0.95575 0.91500 0.79962 1.21731 0.97817 1.32068 1.06577 0.92830 1.25868 1.02477 0.94411 0.96409 1.70058 1.37729 1.34171 1.14832 0.85354 0.78889 0.78008 0.78472 1.19073 1.19181 1.20871 1.20768 0.77979 0.86602 0.86056 1.90665 1.47211 1.20551 1.87863 1.22425 1.02833 0.92319 0.83449 1.86107 1.87737 1.39356 1.11798 1.18744 0.94090 1.00773 0.85429 1.20414 0.94322 0.99201 0.96344 1.20734 0.95713 0.99861 1.00711 1.21085 1.00257 0.98847 0.93373 1.20320 0.92996 0.97265 0.97774 1.20836 1.03719 1.01367 0.90733 1.21069 0.98278 1.01130 0.93208 1.20405 0.96101 0.97548 0.96386 1.20723 0.93436 1.03108 0.99565 0.93869 0.88234 0.92374 0.90192 0.88522 0.95341 0.98641 0.92356 0.88494 0.87873 0.90130 0.89329 0.93454 0.83272 0.90244 0.90228 0.90356 0.83469 0.91394 0.88981 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.23 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -26.10 2.46 -826.15 -2.03 -28.13 16 4 C 0.26 14.54 5.16 85.63 0.44 14.98 16 5 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 9 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.50 22.39 7.75 87.66 0.68 23.07 16 14 O -0.58 -33.20 16.08 16.00 0.26 -32.94 16 15 C 0.07 2.18 4.72 71.24 0.34 2.52 16 16 O -0.33 -12.07 7.85 -73.35 -0.58 -12.64 16 17 C 0.05 1.54 5.67 22.51 0.13 1.66 16 18 C -0.10 -2.47 5.89 -19.77 -0.12 -2.59 16 19 C -0.11 -2.53 9.79 71.24 0.70 -1.83 16 20 C -0.12 -2.17 9.35 22.26 0.21 -1.96 16 21 C -0.08 -1.40 5.88 -19.85 -0.12 -1.52 16 22 C -0.11 -1.06 10.01 71.24 0.71 -0.34 16 23 C -0.12 -2.27 9.35 22.25 0.21 -2.06 16 24 C -0.10 -2.61 5.89 -19.77 -0.12 -2.72 16 25 C -0.11 -2.72 9.79 71.24 0.70 -2.02 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.33 7.22 -2.38 -0.02 1.31 16 29 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 30 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 31 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 32 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.10 2.70 6.52 -2.39 -0.02 2.69 16 35 H 0.10 2.72 7.18 -2.39 -0.02 2.70 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.52 8.09 -2.38 -0.02 1.50 16 38 H 0.05 1.35 7.53 -2.39 -0.02 1.33 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 42 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 43 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 46 H 0.05 1.37 6.33 -2.38 -0.02 1.36 16 Total: -1.00 -79.92 380.88 6.63 -73.30 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.95 Total: 12.90 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.71 Total: -3.46 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.74 Total: -84.83 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.32 Total: -45.58 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -79.92 6.63 -73.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080113726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.932 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds