Wall clock time and date at job start Tue Mar 31 2020 08:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46490 * 109.47114 * 2 1 4 4 C 1.46503 * 120.00232 * 263.72686 * 3 2 1 5 5 C 1.50696 * 109.46840 * 275.10793 * 4 3 2 6 6 H 1.07999 * 120.00426 * 359.97438 * 5 4 3 7 7 C 1.37887 * 120.00052 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99554 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00090 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47498 * 89.99646 * 9 7 5 11 11 H 1.48507 * 109.46996 * 209.99787 * 9 7 5 12 12 H 1.48507 * 109.47210 * 329.99520 * 9 7 5 13 13 C 1.34780 * 120.00211 * 83.72373 * 3 2 1 14 14 O 1.21281 * 119.99915 * 4.34495 * 13 3 2 15 15 C 1.50698 * 120.00428 * 184.33562 * 13 3 2 16 16 H 1.09003 * 109.47031 * 314.41119 * 15 13 3 17 17 C 1.52999 * 109.46828 * 74.41337 * 15 13 3 18 18 C 1.53000 * 109.47490 * 194.41246 * 15 13 3 19 19 C 1.52995 * 109.47495 * 174.99775 * 18 15 13 20 20 O 1.42893 * 109.47459 * 179.97438 * 19 18 15 21 21 C 1.35899 * 117.00175 * 180.02562 * 20 19 18 22 22 C 1.38730 * 120.05653 * 359.72718 * 21 20 19 23 23 C 1.38142 * 119.94616 * 180.30217 * 22 21 20 24 24 C 1.38269 * 120.05294 * 359.94645 * 23 22 21 25 25 C 1.38256 * 120.11393 * 0.05056 * 24 23 22 26 26 C 1.38147 * 120.05908 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47260 * 299.99994 * 1 2 3 29 29 H 1.09001 * 109.46930 * 59.99906 * 1 2 3 30 30 H 1.09001 * 109.46854 * 240.00058 * 2 1 3 31 31 H 1.08999 * 109.46527 * 119.99764 * 2 1 3 32 32 H 1.08996 * 109.46955 * 35.10589 * 4 3 2 33 33 H 1.09001 * 109.47412 * 155.11237 * 4 3 2 34 34 H 0.97001 * 119.99562 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47534 * 66.87960 * 17 15 13 36 36 H 1.09001 * 109.47239 * 186.87930 * 17 15 13 37 37 H 1.08998 * 109.47297 * 306.87682 * 17 15 13 38 38 H 1.09005 * 109.46838 * 55.00260 * 18 15 13 39 39 H 1.08998 * 109.46779 * 295.00493 * 18 15 13 40 40 H 1.09005 * 109.46682 * 60.00389 * 19 18 15 41 41 H 1.08998 * 109.47415 * 300.00631 * 19 18 15 42 42 H 1.07997 * 120.02754 * 0.24886 * 22 21 20 43 43 H 1.08001 * 119.97228 * 179.97438 * 23 22 21 44 44 H 1.08008 * 119.93976 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.97609 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.03438 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3933 2.0256 -1.2611 5 6 3.8180 1.6720 -1.6017 6 1 4.3875 1.0317 -0.9444 7 6 4.3947 2.1660 -2.7527 8 7 3.7011 2.9454 -3.5534 9 14 6.1605 1.7273 -3.1752 10 1 6.1805 0.4882 -3.9935 11 1 6.7762 2.8384 -3.9444 12 1 6.9288 1.5064 -1.9236 13 6 2.1227 2.0591 1.1602 14 8 1.8879 1.5017 2.2115 15 6 2.5313 3.5096 1.1513 16 1 3.3830 3.6430 0.4843 17 6 1.3614 4.3659 0.6625 18 6 2.9205 3.9385 2.5675 19 6 3.4533 5.3724 2.5378 20 8 3.8163 5.7733 3.8604 21 6 4.3110 7.0301 4.0104 22 6 4.4497 7.8585 2.9062 23 6 4.9586 9.1335 3.0604 24 6 5.3287 9.5845 4.3139 25 6 5.1914 8.7609 5.4159 26 6 4.6834 7.4849 5.2670 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7330 1.6795 -2.0563 33 1 2.3020 3.1069 -1.1578 34 1 4.1066 3.2926 -4.3633 35 1 0.5535 4.3285 1.3931 36 1 1.6925 5.3971 0.5393 37 1 1.0049 3.9822 -0.2934 38 1 3.6935 3.2716 2.9496 39 1 2.0454 3.8894 3.2153 40 1 2.6804 6.0393 2.1557 41 1 4.3284 5.4216 1.8898 42 1 4.1608 7.5067 1.9269 43 1 5.0672 9.7786 2.2010 44 1 5.7261 10.5818 4.4324 45 1 5.4816 9.1153 6.3940 46 1 4.5768 6.8417 6.1280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080716793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:13 Heat of formation + Delta-G solvation = -81.203794 kcal Electronic energy + Delta-G solvation = -24955.293897 eV Core-core repulsion = 21423.079056 eV Total energy + Delta-G solvation = -3532.214840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -41.26383 -40.85166 -38.46992 -36.97925 -36.07437 -34.68682 -32.25457 -31.86629 -30.98755 -29.53243 -28.88620 -26.36405 -24.90039 -24.74434 -23.47749 -22.89789 -21.73943 -19.79708 -19.10513 -18.59454 -18.04686 -17.27023 -17.11776 -16.85698 -16.62381 -16.22098 -16.15068 -15.40897 -15.19569 -14.96847 -14.44561 -14.33835 -14.22149 -14.05536 -14.00876 -13.76390 -13.40557 -13.18344 -13.07559 -13.01148 -12.71437 -12.65890 -12.50890 -12.43643 -12.25923 -12.11925 -12.07896 -11.78186 -11.65174 -11.63033 -11.56977 -10.70747 -10.46994 -9.93652 -9.46414 -9.15759 -8.21167 -6.35225 0.40934 0.50962 1.39682 1.42659 1.51174 1.74488 2.05590 2.36332 2.51631 2.86730 3.08967 3.57553 3.82692 3.89429 3.93587 4.00365 4.11122 4.22322 4.26361 4.28402 4.36785 4.40701 4.49007 4.51810 4.53821 4.57489 4.75072 4.81256 4.84131 4.86660 4.91043 4.98249 5.05486 5.10845 5.15361 5.20641 5.28420 5.35178 5.40054 5.50575 5.61613 5.66595 5.86812 5.89583 6.06470 6.46092 6.58439 6.81158 7.29281 7.40949 8.83900 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003613 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.292905 B = 7747.293209 C = 9340.495377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.245 3.755 5 C -0.552 4.552 6 H 0.047 0.953 7 C 0.027 3.973 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.275 1.275 13 C 0.516 3.484 14 O -0.595 6.595 15 C -0.101 4.101 16 H 0.096 0.904 17 C -0.138 4.138 18 C -0.085 4.085 19 C 0.067 3.933 20 O -0.333 6.333 21 C 0.106 3.894 22 C -0.224 4.224 23 C -0.087 4.087 24 C -0.164 4.164 25 C -0.082 4.082 26 C -0.173 4.173 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.132 0.868 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.583 11.107 10.648 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.328 5.328 4 C 0.124 3.876 5 C -0.590 4.590 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.200 1.200 13 C 0.305 3.695 14 O -0.478 6.478 15 C -0.123 4.123 16 H 0.114 0.886 17 C -0.195 4.195 18 C -0.123 4.123 19 C -0.008 4.008 20 O -0.247 6.247 21 C 0.061 3.939 22 C -0.242 4.242 23 C -0.105 4.105 24 C -0.182 4.182 25 C -0.100 4.100 26 C -0.191 4.191 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.173 0.827 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.742 10.742 11.110 15.472 hybrid contribution 0.935 -0.596 -0.886 1.419 sum 0.192 10.146 10.224 14.405 Atomic orbital electron populations 1.21998 0.94606 1.03003 1.01291 1.21381 0.95206 0.82877 1.02011 1.48274 1.62496 1.13948 1.08103 1.19287 0.94063 0.94288 0.79941 1.21696 0.98801 1.31158 1.07385 0.93423 1.25557 1.01485 0.94619 0.95735 1.69988 1.38348 1.33533 1.13479 0.85657 0.80328 0.78123 0.78191 1.20074 1.20312 1.19975 1.20793 0.76293 0.89529 0.82850 1.90567 1.53917 1.71451 1.31903 1.21089 1.01514 0.91570 0.98078 0.88631 1.21827 0.96320 0.99978 1.01398 1.21124 1.01676 0.94054 0.95405 1.22847 1.00180 0.95954 0.81836 1.86010 1.78039 1.28732 1.31938 1.19407 0.95082 0.84077 0.95342 1.21533 1.07601 0.96726 0.98384 1.21314 0.95768 0.94571 0.98846 1.21447 1.02933 1.01471 0.92320 1.21320 0.96223 0.91999 1.00455 1.20737 1.05033 0.98220 0.95123 0.89560 0.93750 0.92678 0.90434 0.92033 0.96370 0.93191 0.92233 0.91535 0.89518 0.92308 0.92380 0.90668 0.89968 0.91582 0.84994 0.83763 0.83280 0.82725 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 10.19 71.99 0.73 -3.95 16 2 C 0.11 4.04 6.12 86.38 0.53 4.57 16 3 N -0.60 -25.23 2.47 -826.17 -2.04 -27.27 16 4 C 0.24 11.38 4.55 85.63 0.39 11.77 16 5 C -0.55 -28.43 9.38 25.60 0.24 -28.19 16 6 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 7 C 0.03 1.39 5.46 84.66 0.46 1.85 16 8 N -0.91 -48.78 13.29 21.45 0.28 -48.49 16 9 Si 0.95 41.30 29.54 68.60 2.03 43.33 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.52 21.44 6.83 87.66 0.60 22.04 16 14 O -0.60 -27.06 15.74 -3.03 -0.05 -27.10 16 15 C -0.10 -3.55 1.86 -11.54 -0.02 -3.57 16 16 H 0.10 3.66 7.26 -2.39 -0.02 3.64 16 17 C -0.14 -4.08 8.34 71.98 0.60 -3.48 16 18 C -0.08 -2.72 4.37 30.59 0.13 -2.59 16 19 C 0.07 1.83 4.50 71.98 0.32 2.16 16 20 O -0.33 -9.92 10.14 -92.41 -0.94 -10.86 16 21 C 0.11 2.82 6.69 22.51 0.15 2.97 16 22 C -0.22 -5.27 9.04 22.36 0.20 -5.07 16 23 C -0.09 -1.66 10.04 22.25 0.22 -1.44 16 24 C -0.16 -2.72 10.04 22.28 0.22 -2.50 16 25 C -0.08 -1.44 10.04 22.25 0.22 -1.22 16 26 C -0.17 -3.93 9.99 22.37 0.22 -3.71 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.88 8.02 -2.39 -0.02 2.86 16 31 H 0.06 2.35 7.56 -2.39 -0.02 2.33 16 32 H 0.02 0.90 8.11 -2.39 -0.02 0.88 16 33 H 0.05 2.31 4.58 -2.39 -0.01 2.30 16 34 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.12 6.91 -2.39 -0.02 2.10 16 37 H 0.06 1.91 6.30 -2.39 -0.02 1.89 16 38 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 40 H 0.08 1.96 6.25 -2.38 -0.01 1.94 16 41 H 0.07 1.79 7.65 -2.39 -0.02 1.78 16 42 H 0.13 2.92 6.30 -2.91 -0.02 2.90 16 43 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -61.96 376.04 5.47 -56.49 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.95 Total: 24.26 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.24 Total: -10.35 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.76 Total: -75.76 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.98 Total: -37.96 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -61.96 5.47 -56.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080716793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.714 kcal (2) G-P(sol) polarization free energy of solvation -61.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds