Wall clock time and date at job start Tue Mar 31 2020 08:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47278 * 2 1 4 4 C 1.46506 * 120.00021 * 88.28040 * 3 2 1 5 5 C 1.50699 * 109.47131 * 94.12808 * 4 3 2 6 6 H 1.07993 * 119.99898 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99833 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99806 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47106 * 89.99550 * 9 7 5 11 11 H 1.48502 * 109.46539 * 209.99606 * 9 7 5 12 12 H 1.48498 * 109.46788 * 329.99410 * 9 7 5 13 13 C 1.34777 * 120.00693 * 268.28405 * 3 2 1 14 14 O 1.21286 * 119.99202 * 5.25981 * 13 3 2 15 15 C 1.50690 * 120.00453 * 185.26993 * 13 3 2 16 16 H 1.09000 * 109.47302 * 40.45083 * 15 13 3 17 17 C 1.53004 * 109.46949 * 280.45016 * 15 13 3 18 18 C 1.53008 * 109.47500 * 160.45653 * 15 13 3 19 19 C 1.52997 * 109.47355 * 184.99791 * 18 15 13 20 20 O 1.42898 * 109.47200 * 179.97438 * 19 18 15 21 21 C 1.35899 * 117.00058 * 180.02562 * 20 19 18 22 22 C 1.38725 * 120.05610 * 359.72117 * 21 20 19 23 23 C 1.38148 * 119.94633 * 179.74418 * 22 21 20 24 24 C 1.38267 * 120.05342 * 0.51562 * 23 22 21 25 25 C 1.38269 * 120.11080 * 359.75977 * 24 23 22 26 26 C 1.38151 * 120.05360 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46426 * 299.99812 * 1 2 3 28 28 H 1.08997 * 109.46855 * 59.99356 * 1 2 3 29 29 H 1.08999 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47163 * 240.00250 * 2 1 3 31 31 H 1.08996 * 109.47761 * 120.00552 * 2 1 3 32 32 H 1.08999 * 109.46966 * 214.13380 * 4 3 2 33 33 H 1.09001 * 109.46697 * 334.12912 * 4 3 2 34 34 H 0.96997 * 119.99743 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46854 * 52.39818 * 17 15 13 36 36 H 1.09000 * 109.47014 * 172.39738 * 17 15 13 37 37 H 1.08994 * 109.47298 * 292.39772 * 17 15 13 38 38 H 1.08999 * 109.46587 * 304.99599 * 18 15 13 39 39 H 1.08994 * 109.47086 * 64.99445 * 18 15 13 40 40 H 1.09003 * 109.46942 * 299.99967 * 19 18 15 41 41 H 1.09006 * 109.46967 * 59.99619 * 19 18 15 42 42 H 1.08002 * 120.03022 * 0.02562 * 22 21 20 43 43 H 1.07993 * 119.97756 * 180.27608 * 23 22 21 44 44 H 1.07994 * 119.94903 * 179.74635 * 24 23 22 45 45 H 1.07998 * 119.97445 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.02288 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2267 2.0845 1.2682 5 6 3.6645 1.9365 1.6945 6 1 4.3543 1.3751 1.0818 7 6 4.0994 2.5178 2.8666 8 7 3.2595 3.2019 3.6124 9 14 5.8819 2.3349 3.3946 10 1 6.6814 3.4536 2.8342 11 1 5.9641 2.3617 4.8771 12 1 6.4168 1.0439 2.8924 13 6 2.2760 2.0050 -1.1666 14 8 2.0140 1.4585 -2.2172 15 6 2.8898 3.3812 -1.1657 16 1 3.6579 3.4360 -0.3943 17 6 1.8058 4.4229 -0.8809 18 6 3.5186 3.6603 -2.5324 19 6 4.2489 5.0041 -2.4931 20 8 4.8366 5.2644 -3.7693 21 6 5.5278 6.4266 -3.9048 22 6 5.6333 7.3012 -2.8332 23 6 6.3409 8.4796 -2.9719 24 6 6.9348 8.7925 -4.1807 25 6 6.8264 7.9250 -5.2519 26 6 6.1244 6.7429 -5.1167 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.9925 3.1413 1.1403 33 1 1.5757 1.6579 2.0313 34 1 3.5655 3.6111 4.4368 35 1 1.2670 4.1479 0.0257 36 1 2.2681 5.4008 -0.7464 37 1 1.1103 4.4620 -1.7192 38 1 4.2274 2.8685 -2.7746 39 1 2.7374 3.6934 -3.2918 40 1 3.5400 5.7959 -2.2508 41 1 5.0301 4.9709 -1.7336 42 1 5.1663 7.0591 -1.8900 43 1 6.4270 9.1588 -2.1367 44 1 7.4842 9.7160 -4.2884 45 1 7.2908 8.1718 -6.1952 46 1 6.0397 6.0659 -5.9539 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080716796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:18 Heat of formation + Delta-G solvation = -67.327998 kcal Electronic energy + Delta-G solvation = -25060.084376 eV Core-core repulsion = 21528.471235 eV Total energy + Delta-G solvation = -3531.613141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.13412 -39.38016 -37.49016 -35.31636 -34.62771 -32.77882 -31.16229 -30.67064 -29.91864 -28.30056 -27.05732 -25.06418 -23.42312 -23.09044 -22.51744 -21.83337 -20.39288 -18.50907 -17.81146 -16.86142 -16.34433 -16.13788 -15.91678 -15.62391 -15.35815 -14.55915 -14.46310 -14.44240 -13.88831 -13.64474 -13.48134 -13.09053 -12.87911 -12.76253 -12.50188 -12.28201 -11.95310 -11.82346 -11.71205 -11.60040 -11.46356 -11.29535 -10.99801 -10.98211 -10.88794 -10.69220 -10.50506 -10.49021 -10.33536 -10.08006 -9.76027 -9.09382 -8.94243 -8.58984 -8.23500 -7.72686 -6.23735 -4.31192 1.25086 1.38309 3.15150 3.18114 3.26255 3.29588 3.43393 3.71897 3.98184 4.29029 4.74591 4.81226 5.01719 5.04122 5.07356 5.12704 5.24877 5.30161 5.31925 5.48239 5.53400 5.58082 5.62872 5.67728 5.81598 5.87870 5.91394 5.98491 6.14926 6.16607 6.22249 6.25214 6.27935 6.33758 6.41814 6.43489 6.54989 6.61813 6.65877 6.72662 6.80587 7.19793 7.45251 7.53775 7.71732 8.01438 8.33018 8.75191 9.01950 9.36968 10.82528 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003837 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.718587 B = 7295.363500 C = 8973.948380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.595 5.595 4 C 0.230 3.770 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.524 3.476 14 O -0.575 6.575 15 C -0.108 4.108 16 H 0.117 0.883 17 C -0.143 4.143 18 C -0.094 4.094 19 C 0.058 3.942 20 O -0.314 6.314 21 C 0.137 3.863 22 C -0.210 4.210 23 C -0.080 4.080 24 C -0.166 4.166 25 C -0.083 4.083 26 C -0.158 4.158 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 7.770 -10.468 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.325 5.325 4 C 0.111 3.889 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.313 3.687 14 O -0.457 6.457 15 C -0.129 4.129 16 H 0.135 0.865 17 C -0.201 4.201 18 C -0.132 4.132 19 C -0.016 4.016 20 O -0.228 6.228 21 C 0.091 3.909 22 C -0.229 4.229 23 C -0.098 4.098 24 C -0.185 4.185 25 C -0.102 4.102 26 C -0.177 4.177 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.144 0.856 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.956 7.410 -10.924 13.344 hybrid contribution 1.017 0.050 0.920 1.372 sum 2.973 7.460 -10.004 12.828 Atomic orbital electron populations 1.22105 0.96917 1.01164 1.01938 1.21239 0.93477 0.83913 1.02260 1.48242 1.63046 1.13368 1.07883 1.19589 0.96908 0.93082 0.79367 1.21512 0.95184 1.34125 1.06983 0.92093 1.24929 0.97843 0.94815 0.96077 1.69916 1.34768 1.33893 1.14182 0.86561 0.84708 0.78792 0.77863 1.20439 1.21027 1.19760 1.20284 0.77767 0.87404 0.83290 1.90585 1.55114 1.68242 1.31744 1.21173 1.00008 0.93260 0.98486 0.86467 1.21850 0.98040 0.97830 1.02351 1.21282 0.99953 0.94628 0.97371 1.22994 0.96832 0.98743 0.83059 1.86065 1.65245 1.35811 1.35641 1.19095 0.91951 0.85684 0.94197 1.21388 1.05530 0.96692 0.99247 1.20973 0.95507 0.95840 0.97479 1.21030 1.03218 1.00595 0.93630 1.20939 0.97282 0.93173 0.98758 1.20468 1.02020 0.98939 0.96238 0.92613 0.92792 0.92523 0.91215 0.90670 0.93635 0.94630 0.92491 0.90901 0.92045 0.92777 0.90700 0.90386 0.91608 0.91556 0.85136 0.85870 0.86160 0.85617 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 2.11 6.09 -4.04 -0.02 2.09 16 3 N -0.60 -12.34 2.47 -175.06 -0.43 -12.77 16 4 C 0.23 5.25 4.81 -5.19 -0.02 5.23 16 5 C -0.54 -13.49 8.27 -34.44 -0.28 -13.78 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -23.62 13.29 55.43 0.74 -22.89 16 9 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.52 10.78 6.80 -10.99 -0.07 10.71 16 14 O -0.58 -12.88 15.73 5.55 0.09 -12.80 16 15 C -0.11 -1.93 1.91 -91.77 -0.18 -2.10 16 16 H 0.12 2.28 6.59 -51.93 -0.34 1.94 16 17 C -0.14 -2.26 8.42 37.16 0.31 -1.95 16 18 C -0.09 -1.53 4.42 -26.73 -0.12 -1.65 16 19 C 0.06 0.83 4.50 37.16 0.17 1.00 16 20 O -0.31 -4.73 10.14 -19.42 -0.20 -4.93 16 21 C 0.14 1.88 6.69 -39.22 -0.26 1.61 16 22 C -0.21 -2.64 9.04 -39.43 -0.36 -3.00 16 23 C -0.08 -0.87 10.04 -39.60 -0.40 -1.27 16 24 C -0.17 -1.67 10.04 -39.56 -0.40 -2.06 16 25 C -0.08 -0.85 10.04 -39.60 -0.40 -1.24 16 26 C -0.16 -1.90 9.99 -39.43 -0.39 -2.30 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.30 7.45 -51.93 -0.39 0.91 16 31 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 32 H 0.05 1.05 4.78 -51.93 -0.25 0.80 16 33 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.07 1.25 5.92 -51.93 -0.31 0.94 16 36 H 0.06 0.85 6.95 -51.93 -0.36 0.48 16 37 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 40 H 0.07 0.85 6.25 -51.93 -0.32 0.52 16 41 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 42 H 0.13 1.55 6.30 -52.49 -0.33 1.22 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -28.61 374.39 -8.63 -37.25 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.30 Total: 4.84 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -2.14 Total: -9.32 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.30 Total: -35.66 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.11 Total: -17.72 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.61 -8.63 -37.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080716796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.081 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds