Wall clock time and date at job start Tue Mar 31 2020 08:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47278 * 2 1 4 4 C 1.46506 * 120.00021 * 88.28040 * 3 2 1 5 5 C 1.50699 * 109.47131 * 94.12808 * 4 3 2 6 6 H 1.07993 * 119.99898 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99833 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99806 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47106 * 89.99550 * 9 7 5 11 11 H 1.48502 * 109.46539 * 209.99606 * 9 7 5 12 12 H 1.48498 * 109.46788 * 329.99410 * 9 7 5 13 13 C 1.34777 * 120.00693 * 268.28405 * 3 2 1 14 14 O 1.21286 * 119.99202 * 5.25981 * 13 3 2 15 15 C 1.50690 * 120.00453 * 185.26993 * 13 3 2 16 16 H 1.09000 * 109.47302 * 40.45083 * 15 13 3 17 17 C 1.53004 * 109.46949 * 280.45016 * 15 13 3 18 18 C 1.53008 * 109.47500 * 160.45653 * 15 13 3 19 19 C 1.52997 * 109.47355 * 184.99791 * 18 15 13 20 20 O 1.42898 * 109.47200 * 179.97438 * 19 18 15 21 21 C 1.35899 * 117.00058 * 180.02562 * 20 19 18 22 22 C 1.38725 * 120.05610 * 359.72117 * 21 20 19 23 23 C 1.38148 * 119.94633 * 179.74418 * 22 21 20 24 24 C 1.38267 * 120.05342 * 0.51562 * 23 22 21 25 25 C 1.38269 * 120.11080 * 359.75977 * 24 23 22 26 26 C 1.38151 * 120.05360 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46426 * 299.99812 * 1 2 3 28 28 H 1.08997 * 109.46855 * 59.99356 * 1 2 3 29 29 H 1.08999 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47163 * 240.00250 * 2 1 3 31 31 H 1.08996 * 109.47761 * 120.00552 * 2 1 3 32 32 H 1.08999 * 109.46966 * 214.13380 * 4 3 2 33 33 H 1.09001 * 109.46697 * 334.12912 * 4 3 2 34 34 H 0.96997 * 119.99743 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46854 * 52.39818 * 17 15 13 36 36 H 1.09000 * 109.47014 * 172.39738 * 17 15 13 37 37 H 1.08994 * 109.47298 * 292.39772 * 17 15 13 38 38 H 1.08999 * 109.46587 * 304.99599 * 18 15 13 39 39 H 1.08994 * 109.47086 * 64.99445 * 18 15 13 40 40 H 1.09003 * 109.46942 * 299.99967 * 19 18 15 41 41 H 1.09006 * 109.46967 * 59.99619 * 19 18 15 42 42 H 1.08002 * 120.03022 * 0.02562 * 22 21 20 43 43 H 1.07993 * 119.97756 * 180.27608 * 23 22 21 44 44 H 1.07994 * 119.94903 * 179.74635 * 24 23 22 45 45 H 1.07998 * 119.97445 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.02288 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2267 2.0845 1.2682 5 6 3.6645 1.9365 1.6945 6 1 4.3543 1.3751 1.0818 7 6 4.0994 2.5178 2.8666 8 7 3.2595 3.2019 3.6124 9 14 5.8819 2.3349 3.3946 10 1 6.6814 3.4536 2.8342 11 1 5.9641 2.3617 4.8771 12 1 6.4168 1.0439 2.8924 13 6 2.2760 2.0050 -1.1666 14 8 2.0140 1.4585 -2.2172 15 6 2.8898 3.3812 -1.1657 16 1 3.6579 3.4360 -0.3943 17 6 1.8058 4.4229 -0.8809 18 6 3.5186 3.6603 -2.5324 19 6 4.2489 5.0041 -2.4931 20 8 4.8366 5.2644 -3.7693 21 6 5.5278 6.4266 -3.9048 22 6 5.6333 7.3012 -2.8332 23 6 6.3409 8.4796 -2.9719 24 6 6.9348 8.7925 -4.1807 25 6 6.8264 7.9250 -5.2519 26 6 6.1244 6.7429 -5.1167 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.9925 3.1413 1.1403 33 1 1.5757 1.6579 2.0313 34 1 3.5655 3.6111 4.4368 35 1 1.2670 4.1479 0.0257 36 1 2.2681 5.4008 -0.7464 37 1 1.1103 4.4620 -1.7192 38 1 4.2274 2.8685 -2.7746 39 1 2.7374 3.6934 -3.2918 40 1 3.5400 5.7959 -2.2508 41 1 5.0301 4.9709 -1.7336 42 1 5.1663 7.0591 -1.8900 43 1 6.4270 9.1588 -2.1367 44 1 7.4842 9.7160 -4.2884 45 1 7.2908 8.1718 -6.1952 46 1 6.0397 6.0659 -5.9539 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080716796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:18 Heat of formation + Delta-G solvation = -80.772430 kcal Electronic energy + Delta-G solvation = -25060.667370 eV Core-core repulsion = 21528.471235 eV Total energy + Delta-G solvation = -3532.196135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25523 -40.84744 -38.47018 -36.97912 -36.06168 -34.66749 -32.24875 -31.86565 -30.97824 -29.50096 -28.90052 -26.38204 -24.92923 -24.70712 -23.47038 -22.88571 -21.71288 -19.82833 -19.09946 -18.67202 -17.95429 -17.25921 -17.11875 -16.83956 -16.62833 -16.22156 -16.07733 -15.39171 -15.18863 -15.00101 -14.45421 -14.34268 -14.22928 -14.05995 -14.02505 -13.78494 -13.36863 -13.21863 -13.06568 -12.99771 -12.70388 -12.67430 -12.47995 -12.44272 -12.25053 -12.09857 -12.01604 -11.79209 -11.65168 -11.62626 -11.56133 -10.67935 -10.46139 -9.94066 -9.45712 -9.16133 -8.19672 -6.33294 0.40452 0.50620 1.40343 1.43839 1.51828 1.73895 2.07265 2.36688 2.52420 2.86313 3.10310 3.59260 3.83945 3.89252 3.96025 4.00486 4.10966 4.24339 4.26488 4.28993 4.37158 4.39936 4.51329 4.53221 4.54329 4.58109 4.74713 4.80221 4.83276 4.87867 4.90934 4.99242 5.04867 5.10433 5.14307 5.23539 5.29693 5.39630 5.41198 5.50233 5.61110 5.68420 5.87834 5.89251 6.07924 6.45582 6.57342 6.82836 7.30543 7.42199 8.85485 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003837 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.718587 B = 7295.363500 C = 8973.948380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.244 3.756 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.028 3.972 8 N -0.915 5.915 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.518 3.482 14 O -0.596 6.596 15 C -0.103 4.103 16 H 0.101 0.899 17 C -0.138 4.138 18 C -0.085 4.085 19 C 0.067 3.933 20 O -0.332 6.332 21 C 0.106 3.894 22 C -0.225 4.225 23 C -0.087 4.087 24 C -0.164 4.164 25 C -0.082 4.082 26 C -0.172 4.172 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.020 0.980 34 H 0.268 0.732 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 9.223 -10.912 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.330 5.330 4 C 0.124 3.876 5 C -0.585 4.585 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.200 1.200 13 C 0.307 3.693 14 O -0.479 6.479 15 C -0.124 4.124 16 H 0.119 0.881 17 C -0.195 4.195 18 C -0.123 4.123 19 C -0.008 4.008 20 O -0.247 6.247 21 C 0.061 3.939 22 C -0.243 4.243 23 C -0.105 4.105 24 C -0.181 4.181 25 C -0.100 4.100 26 C -0.191 4.191 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.173 0.827 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.884 8.860 -11.371 14.700 hybrid contribution 0.755 -0.391 1.006 1.317 sum 3.638 8.468 -10.365 13.870 Atomic orbital electron populations 1.22001 0.94755 1.02953 1.01254 1.21421 0.95301 0.82779 1.02101 1.48296 1.63158 1.14187 1.07316 1.19295 0.95510 0.93094 0.79712 1.21650 0.95977 1.33855 1.06997 0.93197 1.25536 1.01083 0.94548 0.96092 1.69991 1.36248 1.34582 1.14568 0.85698 0.80755 0.78632 0.77488 1.19776 1.20667 1.19973 1.20758 0.77399 0.88275 0.82825 1.90565 1.56110 1.68978 1.32226 1.21122 1.00030 0.92392 0.98849 0.88130 1.21818 0.97545 0.98127 1.01988 1.21134 0.99525 0.95442 0.96167 1.22837 0.96944 0.97848 0.83155 1.86009 1.66000 1.37013 1.35637 1.19405 0.93279 0.85737 0.95465 1.21532 1.06330 0.97423 0.99053 1.21309 0.94970 0.95490 0.98755 1.21447 1.02319 1.01400 0.92982 1.21328 0.96301 0.92157 1.00169 1.20739 1.02384 1.00017 0.95930 0.92843 0.93766 0.89538 0.91560 0.90564 0.93698 0.96162 0.92291 0.92362 0.89798 0.91665 0.92312 0.90695 0.90105 0.91685 0.85137 0.83824 0.83250 0.82656 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 10.24 71.98 0.74 -3.98 16 2 C 0.11 3.95 6.09 86.38 0.53 4.47 16 3 N -0.60 -25.23 2.47 -826.15 -2.04 -27.27 16 4 C 0.24 11.32 4.81 85.63 0.41 11.73 16 5 C -0.55 -27.56 8.27 25.60 0.21 -27.35 16 6 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 7 C 0.03 1.44 5.46 84.66 0.46 1.90 16 8 N -0.91 -48.49 13.29 21.45 0.28 -48.21 16 9 Si 0.95 40.75 29.54 68.60 2.03 42.78 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.52 21.63 6.80 87.65 0.60 22.23 16 14 O -0.60 -27.03 15.73 -3.05 -0.05 -27.08 16 15 C -0.10 -3.70 1.91 -11.54 -0.02 -3.72 16 16 H 0.10 3.99 6.59 -2.39 -0.02 3.97 16 17 C -0.14 -4.27 8.42 71.98 0.61 -3.67 16 18 C -0.08 -2.78 4.42 30.60 0.14 -2.64 16 19 C 0.07 1.91 4.50 71.98 0.32 2.23 16 20 O -0.33 -10.10 10.14 -92.41 -0.94 -11.04 16 21 C 0.11 2.88 6.69 22.50 0.15 3.03 16 22 C -0.22 -5.47 9.04 22.36 0.20 -5.27 16 23 C -0.09 -1.72 10.04 22.26 0.22 -1.50 16 24 C -0.16 -2.79 10.04 22.28 0.22 -2.57 16 25 C -0.08 -1.46 10.04 22.26 0.22 -1.23 16 26 C -0.17 -3.98 9.99 22.37 0.22 -3.76 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.48 7.45 -2.39 -0.02 2.46 16 31 H 0.08 2.77 8.09 -2.39 -0.02 2.75 16 32 H 0.05 2.10 4.78 -2.39 -0.01 2.09 16 33 H 0.02 1.00 8.04 -2.39 -0.02 0.98 16 34 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 35 H 0.06 1.99 5.92 -2.39 -0.01 1.97 16 36 H 0.08 2.21 6.95 -2.39 -0.02 2.19 16 37 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 40 H 0.08 2.03 6.25 -2.39 -0.01 2.01 16 41 H 0.06 1.84 7.67 -2.38 -0.02 1.83 16 42 H 0.13 3.04 6.30 -2.91 -0.02 3.02 16 43 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -60.85 374.39 5.48 -55.37 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.95 Total: 25.53 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 5.24 Total: -10.09 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -1.75 Total: -75.47 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.98 Total: -38.12 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -60.85 5.48 -55.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080716796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.401 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds