Wall clock time and date at job start Tue Mar 31 2020 09:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47044 * 2 1 4 4 C 1.37097 * 119.99802 * 264.77051 * 3 2 1 5 5 H 1.08004 * 120.00372 * 138.84715 * 4 3 2 6 6 C 1.38948 * 119.99775 * 318.84583 * 4 3 2 7 7 N 1.31409 * 120.00237 * 341.83728 * 6 4 3 8 8 Si 1.86806 * 120.00151 * 161.83472 * 6 4 3 9 9 H 1.48501 * 109.46736 * 60.00230 * 8 6 4 10 10 H 1.48504 * 109.47031 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47080 * 300.00238 * 8 6 4 12 12 C 1.34776 * 120.00244 * 84.76326 * 3 2 1 13 13 O 1.21293 * 119.99840 * 180.02562 * 12 3 2 14 14 C 1.50700 * 119.99811 * 0.02562 * 12 3 2 15 15 C 1.52998 * 109.46735 * 179.97438 * 14 12 3 16 16 C 1.53007 * 109.46837 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46766 * 180.02562 * 16 15 14 18 18 C 1.35901 * 116.99769 * 179.97438 * 17 16 15 19 19 C 1.38753 * 120.05578 * 359.97438 * 18 17 16 20 20 C 1.38122 * 119.94628 * 180.27773 * 19 18 17 21 21 C 1.38291 * 120.05027 * 359.48943 * 20 19 18 22 22 C 1.50707 * 119.94164 * 180.25681 * 21 20 19 23 23 C 1.38244 * 120.11465 * 0.50952 * 21 20 19 24 24 C 1.50692 * 119.97250 * 179.72110 * 23 21 20 25 25 C 1.38169 * 120.05319 * 359.74791 * 23 21 20 26 26 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47384 * 300.00408 * 1 2 3 28 28 H 1.09005 * 109.46711 * 60.00545 * 1 2 3 29 29 H 1.08998 * 109.47384 * 239.99592 * 2 1 3 30 30 H 1.09005 * 109.46711 * 119.99455 * 2 1 3 31 31 H 0.97002 * 120.00319 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46976 * 60.00150 * 14 12 3 33 33 H 1.08997 * 109.47473 * 299.99983 * 14 12 3 34 34 H 1.08999 * 109.47624 * 60.00145 * 15 14 12 35 35 H 1.09003 * 109.47741 * 299.99785 * 15 14 12 36 36 H 1.08997 * 109.47194 * 60.00084 * 16 15 14 37 37 H 1.09003 * 109.46683 * 299.99443 * 16 15 14 38 38 H 1.08009 * 120.02997 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.97358 * 179.72842 * 20 19 18 40 40 H 1.09003 * 109.46899 * 270.25504 * 22 21 20 41 41 H 1.09004 * 109.47147 * 30.25034 * 22 21 20 42 42 H 1.08994 * 109.47304 * 150.25396 * 22 21 20 43 43 H 1.09004 * 109.47596 * 270.02315 * 24 23 21 44 44 H 1.09005 * 109.47196 * 30.02415 * 24 23 21 45 45 H 1.09003 * 109.47062 * 150.02465 * 24 23 21 46 46 H 1.07999 * 120.02290 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9914 -1.1824 5 1 2.0742 3.0218 -1.3536 6 6 3.0372 1.2842 -2.1604 7 7 3.6791 0.1818 -1.8450 8 14 3.0501 1.9003 -3.9239 9 1 3.6538 3.2563 -3.9699 10 1 3.8494 0.9744 -4.7659 11 1 1.6581 1.9605 -4.4374 12 6 2.1426 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7796 1.3812 2.4620 15 6 2.0115 2.3539 3.6200 16 6 1.6436 1.6726 4.9397 17 8 1.8596 2.5813 6.0213 18 6 1.5789 2.1296 7.2719 19 6 1.1047 0.8385 7.4544 20 6 0.8147 0.3837 8.7259 21 6 1.0066 1.2106 9.8177 22 6 0.6948 0.7099 11.2045 23 6 1.4789 2.4974 9.6386 24 6 1.6808 3.3979 10.8299 25 6 1.7655 2.9588 8.3681 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 4.1600 -0.3118 -2.5277 32 1 2.4018 0.4970 2.6006 33 1 0.7303 1.0872 2.4386 34 1 1.3897 3.2384 3.4817 35 1 3.0610 2.6476 3.6434 36 1 2.2658 0.7883 5.0778 37 1 0.5942 1.3787 4.9166 38 1 0.9587 0.1908 6.6024 39 1 0.4414 -0.6197 8.8680 40 1 -0.3453 0.9303 11.4450 41 1 0.8571 -0.3671 11.2470 42 1 1.3468 1.2044 11.9244 43 1 0.7646 3.9558 11.0232 44 1 1.9301 2.7948 11.7031 45 1 2.4939 4.0944 10.6252 46 1 2.1341 3.9643 8.2287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081932920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:39 Heat of formation + Delta-G solvation = -65.931039 kcal Electronic energy + Delta-G solvation = -24169.310634 eV Core-core repulsion = 20637.758070 eV Total energy + Delta-G solvation = -3531.552564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.31602 -38.68753 -38.03766 -35.07114 -33.57271 -32.74599 -32.10365 -31.73132 -29.42906 -28.18187 -26.92373 -26.04191 -24.63809 -22.67858 -22.25293 -21.54871 -20.45528 -18.77459 -17.67036 -16.80123 -16.41041 -16.23586 -15.72135 -15.41249 -15.05559 -14.57804 -14.46987 -14.22864 -14.05703 -13.68676 -13.35674 -13.16941 -13.03609 -12.88003 -12.65626 -12.38514 -12.19494 -12.01905 -11.94096 -11.65658 -11.44350 -11.34421 -11.27853 -11.01868 -10.95427 -10.90824 -10.66989 -10.44942 -10.35210 -10.24609 -10.06537 -8.93026 -8.90263 -8.38290 -8.10152 -7.40712 -6.30737 -3.99122 1.18118 1.31199 3.16597 3.20888 3.25968 3.30036 3.58372 3.94445 4.18121 4.59368 4.62478 4.79630 4.85867 4.95745 4.98677 5.02509 5.08386 5.15801 5.23443 5.26444 5.35590 5.41877 5.50726 5.57542 5.59721 5.65462 5.70534 5.81101 5.82932 5.89675 5.94799 6.09443 6.19775 6.20578 6.28800 6.33655 6.45665 6.49209 6.53113 6.61202 6.72202 6.86866 7.21357 7.43873 7.59774 8.31724 8.53868 9.21911 9.42003 10.04527 10.74605 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035538 B = 0.002228 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.703681 B =12563.548587 C =13032.953672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.443 5.443 4 C -0.309 4.309 5 H 0.087 0.913 6 C 0.038 3.962 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.463 3.537 13 O -0.580 6.580 14 C -0.132 4.132 15 C -0.099 4.099 16 C 0.061 3.939 17 O -0.312 6.312 18 C 0.136 3.864 19 C -0.212 4.212 20 C -0.076 4.076 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.050 4.050 24 C -0.117 4.117 25 C -0.154 4.154 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -3.137 21.531 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.163 5.163 4 C -0.437 4.437 5 H 0.104 0.896 6 C -0.167 4.167 7 N -0.511 5.511 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.251 3.749 13 O -0.463 6.463 14 C -0.172 4.172 15 C -0.137 4.137 16 C -0.014 4.014 17 O -0.226 6.226 18 C 0.090 3.910 19 C -0.231 4.231 20 C -0.094 4.094 21 C -0.134 4.134 22 C -0.166 4.166 23 C -0.050 4.050 24 C -0.173 4.173 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.471 -2.539 21.331 22.435 hybrid contribution -0.051 -0.297 -1.090 1.131 sum -6.522 -2.836 20.241 21.454 Atomic orbital electron populations 1.22232 0.98287 1.00313 1.01544 1.21450 0.91548 0.85699 1.03418 1.43448 1.56223 1.11723 1.04869 1.19325 1.34834 0.98503 0.91012 0.89551 1.25426 0.94067 0.96585 1.00575 1.69915 1.29515 1.17606 1.34066 0.86134 0.78340 0.78855 0.82171 1.19732 1.21009 1.19900 1.20259 0.81943 0.87897 0.84811 1.90528 1.50088 1.18793 1.86896 1.21529 1.02424 0.99215 0.94064 1.21213 1.04094 0.98939 0.89416 1.22970 1.00551 0.92380 0.85518 1.86102 1.81759 1.42086 1.12609 1.19043 0.94480 0.92450 0.85040 1.21288 1.07149 0.95966 0.98678 1.20788 0.97967 0.99210 0.91483 1.19624 1.03877 0.94170 0.95755 1.20762 1.01630 1.01044 0.93197 1.19507 0.97281 0.94122 0.94090 1.20869 1.02338 0.98587 0.95547 1.20292 1.06618 1.00399 0.89926 0.93130 0.93866 0.92417 0.87918 0.93375 0.92255 0.89988 0.90263 0.90397 0.90262 0.92025 0.92130 0.85338 0.85951 0.91602 0.91927 0.91414 0.90954 0.91004 0.91402 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.15 37.16 0.38 -2.51 16 2 C 0.10 2.19 5.41 -4.04 -0.02 2.17 16 3 N -0.44 -11.19 2.50 -114.81 -0.29 -11.47 16 4 C -0.31 -8.60 8.84 -14.93 -0.13 -8.73 16 5 H 0.09 2.52 7.82 -52.48 -0.41 2.11 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.70 11.61 55.50 0.64 -23.05 16 8 Si 0.92 20.75 29.59 -169.99 -5.03 15.72 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.46 11.28 7.59 -10.99 -0.08 11.20 16 13 O -0.58 -16.33 15.89 5.55 0.09 -16.24 16 14 C -0.13 -2.35 4.31 -27.88 -0.12 -2.47 16 15 C -0.10 -1.65 4.87 -26.73 -0.13 -1.78 16 16 C 0.06 0.82 4.74 37.16 0.18 1.00 16 17 O -0.31 -4.66 10.14 -19.43 -0.20 -4.86 16 18 C 0.14 1.81 6.69 -39.22 -0.26 1.55 16 19 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 20 C -0.08 -0.78 9.70 -39.60 -0.38 -1.17 16 21 C -0.13 -1.32 5.88 -104.60 -0.62 -1.93 16 22 C -0.11 -0.76 9.60 36.01 0.35 -0.41 16 23 C -0.05 -0.51 5.88 -104.65 -0.62 -1.13 16 24 C -0.12 -0.85 9.60 36.00 0.35 -0.50 16 25 C -0.15 -1.86 9.64 -39.43 -0.38 -2.24 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.70 6.60 -51.93 -0.34 0.35 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 30 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.08 1.35 7.41 -51.93 -0.38 0.97 16 33 H 0.08 1.23 6.54 -51.93 -0.34 0.89 16 34 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 35 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 36 H 0.06 0.75 7.66 -51.93 -0.40 0.36 16 37 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 38 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.43 5.94 -51.93 -0.31 0.12 16 45 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -32.17 371.59 -8.34 -40.51 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.22 Total: 2.67 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.94 Total: -8.88 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.36 Total: -34.52 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.11 Total: -21.10 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.17 -8.34 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081932920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.422 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds