Wall clock time and date at job start Tue Mar 31 2020 09:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47044 * 2 1 4 4 C 1.37097 * 119.99802 * 264.77051 * 3 2 1 5 5 H 1.08004 * 120.00372 * 138.84715 * 4 3 2 6 6 C 1.38948 * 119.99775 * 318.84583 * 4 3 2 7 7 N 1.31409 * 120.00237 * 341.83728 * 6 4 3 8 8 Si 1.86806 * 120.00151 * 161.83472 * 6 4 3 9 9 H 1.48501 * 109.46736 * 60.00230 * 8 6 4 10 10 H 1.48504 * 109.47031 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47080 * 300.00238 * 8 6 4 12 12 C 1.34776 * 120.00244 * 84.76326 * 3 2 1 13 13 O 1.21293 * 119.99840 * 180.02562 * 12 3 2 14 14 C 1.50700 * 119.99811 * 0.02562 * 12 3 2 15 15 C 1.52998 * 109.46735 * 179.97438 * 14 12 3 16 16 C 1.53007 * 109.46837 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.46766 * 180.02562 * 16 15 14 18 18 C 1.35901 * 116.99769 * 179.97438 * 17 16 15 19 19 C 1.38753 * 120.05578 * 359.97438 * 18 17 16 20 20 C 1.38122 * 119.94628 * 180.27773 * 19 18 17 21 21 C 1.38291 * 120.05027 * 359.48943 * 20 19 18 22 22 C 1.50707 * 119.94164 * 180.25681 * 21 20 19 23 23 C 1.38244 * 120.11465 * 0.50952 * 21 20 19 24 24 C 1.50692 * 119.97250 * 179.72110 * 23 21 20 25 25 C 1.38169 * 120.05319 * 359.74791 * 23 21 20 26 26 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47384 * 300.00408 * 1 2 3 28 28 H 1.09005 * 109.46711 * 60.00545 * 1 2 3 29 29 H 1.08998 * 109.47384 * 239.99592 * 2 1 3 30 30 H 1.09005 * 109.46711 * 119.99455 * 2 1 3 31 31 H 0.97002 * 120.00319 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46976 * 60.00150 * 14 12 3 33 33 H 1.08997 * 109.47473 * 299.99983 * 14 12 3 34 34 H 1.08999 * 109.47624 * 60.00145 * 15 14 12 35 35 H 1.09003 * 109.47741 * 299.99785 * 15 14 12 36 36 H 1.08997 * 109.47194 * 60.00084 * 16 15 14 37 37 H 1.09003 * 109.46683 * 299.99443 * 16 15 14 38 38 H 1.08009 * 120.02997 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.97358 * 179.72842 * 20 19 18 40 40 H 1.09003 * 109.46899 * 270.25504 * 22 21 20 41 41 H 1.09004 * 109.47147 * 30.25034 * 22 21 20 42 42 H 1.08994 * 109.47304 * 150.25396 * 22 21 20 43 43 H 1.09004 * 109.47596 * 270.02315 * 24 23 21 44 44 H 1.09005 * 109.47196 * 30.02415 * 24 23 21 45 45 H 1.09003 * 109.47062 * 150.02465 * 24 23 21 46 46 H 1.07999 * 120.02290 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9914 -1.1824 5 1 2.0742 3.0218 -1.3536 6 6 3.0372 1.2842 -2.1604 7 7 3.6791 0.1818 -1.8450 8 14 3.0501 1.9003 -3.9239 9 1 3.6538 3.2563 -3.9699 10 1 3.8494 0.9744 -4.7659 11 1 1.6581 1.9605 -4.4374 12 6 2.1426 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7796 1.3812 2.4620 15 6 2.0115 2.3539 3.6200 16 6 1.6436 1.6726 4.9397 17 8 1.8596 2.5813 6.0213 18 6 1.5789 2.1296 7.2719 19 6 1.1047 0.8385 7.4544 20 6 0.8147 0.3837 8.7259 21 6 1.0066 1.2106 9.8177 22 6 0.6948 0.7099 11.2045 23 6 1.4789 2.4974 9.6386 24 6 1.6808 3.3979 10.8299 25 6 1.7655 2.9588 8.3681 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 4.1600 -0.3118 -2.5277 32 1 2.4018 0.4970 2.6006 33 1 0.7303 1.0872 2.4386 34 1 1.3897 3.2384 3.4817 35 1 3.0610 2.6476 3.6434 36 1 2.2658 0.7883 5.0778 37 1 0.5942 1.3787 4.9166 38 1 0.9587 0.1908 6.6024 39 1 0.4414 -0.6197 8.8680 40 1 -0.3453 0.9303 11.4450 41 1 0.8571 -0.3671 11.2470 42 1 1.3468 1.2044 11.9244 43 1 0.7646 3.9558 11.0232 44 1 1.9301 2.7948 11.7031 45 1 2.4939 4.0944 10.6252 46 1 2.1341 3.9643 8.2287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081932920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:34 Heat of formation + Delta-G solvation = -83.411362 kcal Electronic energy + Delta-G solvation = -24170.068637 eV Core-core repulsion = 20637.758070 eV Total energy + Delta-G solvation = -3532.310568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -41.21545 -40.48019 -39.00384 -36.96228 -34.95026 -33.93363 -33.49453 -32.68415 -31.13092 -29.21475 -28.05080 -26.84644 -26.34366 -24.05691 -23.46263 -22.71487 -21.35706 -20.51314 -18.75787 -18.62064 -17.79429 -17.42086 -17.10934 -16.78596 -16.23332 -16.00782 -15.94837 -15.24097 -15.06598 -14.69677 -14.62318 -14.44784 -14.24850 -14.04537 -13.61808 -13.55166 -13.48607 -13.17796 -13.07692 -12.84415 -12.80921 -12.74324 -12.66128 -12.40926 -12.25467 -12.12263 -12.04254 -12.01093 -11.73188 -11.60890 -11.43163 -10.87779 -10.35659 -9.72931 -9.39277 -8.95091 -8.34218 -6.10652 0.37681 0.47803 1.38940 1.39865 1.50145 2.06837 2.13927 2.32425 2.77119 3.01140 3.14248 3.77913 3.90320 3.91429 3.93178 4.08426 4.10881 4.22729 4.31304 4.36106 4.38086 4.40466 4.43096 4.53469 4.64977 4.68864 4.75613 4.82469 4.85925 4.88376 4.97019 5.04310 5.04924 5.11786 5.20280 5.23834 5.28788 5.32949 5.43677 5.45664 5.46981 5.57383 5.75028 5.94176 6.24102 6.49877 6.56765 7.19681 7.48396 8.09355 8.69302 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035538 B = 0.002228 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.703681 B =12563.548587 C =13032.953672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.456 5.456 4 C -0.343 4.343 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.891 5.891 8 Si 0.981 3.019 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.262 1.262 12 C 0.445 3.555 13 O -0.633 6.633 14 C -0.115 4.115 15 C -0.091 4.091 16 C 0.070 3.930 17 O -0.338 6.338 18 C 0.106 3.894 19 C -0.220 4.220 20 C -0.082 4.082 21 C -0.137 4.137 22 C -0.109 4.109 23 C -0.056 4.056 24 C -0.116 4.116 25 C -0.174 4.174 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.273 0.727 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -5.332 23.279 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.175 5.175 4 C -0.471 4.471 5 H 0.076 0.924 6 C -0.200 4.200 7 N -0.529 5.529 8 Si 0.804 3.196 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.235 3.765 13 O -0.520 6.520 14 C -0.155 4.155 15 C -0.130 4.130 16 C -0.005 4.005 17 O -0.252 6.252 18 C 0.061 3.939 19 C -0.239 4.239 20 C -0.100 4.100 21 C -0.137 4.137 22 C -0.165 4.165 23 C -0.057 4.057 24 C -0.172 4.172 25 C -0.192 4.192 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.816 -4.776 23.092 24.843 hybrid contribution 0.388 0.389 -1.551 1.645 sum -7.428 -4.387 21.541 23.205 Atomic orbital electron populations 1.22123 0.95168 1.02595 1.01388 1.21594 0.94079 0.83346 1.03254 1.43774 1.56144 1.13110 1.04499 1.19284 1.36626 0.98057 0.93144 0.92404 1.26155 0.93176 0.96675 1.03959 1.69978 1.29407 1.18170 1.35319 0.85202 0.78908 0.77962 0.77504 1.20532 1.19577 1.18699 1.21357 0.80944 0.87504 0.86701 1.90484 1.52333 1.21250 1.87941 1.21428 1.04589 0.99139 0.90357 1.21057 1.02100 0.98491 0.91316 1.22830 1.02099 0.91948 0.83600 1.86037 1.82612 1.43026 1.13567 1.19311 0.96393 0.93732 0.84449 1.21487 1.07068 0.95389 0.99912 1.21151 0.97420 1.00395 0.91013 1.20068 1.02517 0.93813 0.97283 1.20830 1.02468 1.01791 0.91432 1.19875 0.96585 0.94997 0.94202 1.20935 1.02920 0.98493 0.94886 1.20505 1.07484 1.00480 0.90763 0.89529 0.92311 0.94307 0.90461 0.91065 0.91747 0.87908 0.87034 0.92287 0.92908 0.90381 0.89932 0.84171 0.83520 0.90580 0.90826 0.90271 0.89968 0.89272 0.91278 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 10.15 71.98 0.73 -4.33 16 2 C 0.10 4.17 5.41 86.38 0.47 4.64 16 3 N -0.46 -23.42 2.50 -635.53 -1.59 -25.01 16 4 C -0.34 -19.75 8.84 84.04 0.74 -19.01 16 5 H 0.06 3.57 7.82 -2.91 -0.02 3.55 16 6 C 0.00 0.16 4.95 84.93 0.42 0.58 16 7 N -0.89 -48.58 11.61 21.66 0.25 -48.33 16 8 Si 0.98 42.98 29.59 68.60 2.03 45.01 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 C 0.44 22.16 7.59 87.66 0.67 22.82 16 13 O -0.63 -37.48 15.89 -3.07 -0.05 -37.53 16 14 C -0.12 -3.99 4.31 29.85 0.13 -3.86 16 15 C -0.09 -3.09 4.87 30.60 0.15 -2.94 16 16 C 0.07 1.82 4.74 71.98 0.34 2.16 16 17 O -0.34 -10.22 10.14 -92.44 -0.94 -11.16 16 18 C 0.11 2.82 6.69 22.51 0.15 2.97 16 19 C -0.22 -4.81 9.04 22.37 0.20 -4.61 16 20 C -0.08 -1.49 9.70 22.25 0.22 -1.27 16 21 C -0.14 -2.37 5.88 -19.85 -0.12 -2.49 16 22 C -0.11 -1.14 9.60 71.24 0.68 -0.46 16 23 C -0.06 -1.09 5.88 -19.88 -0.12 -1.20 16 24 C -0.12 -1.47 9.60 71.23 0.68 -0.79 16 25 C -0.17 -4.22 9.64 22.37 0.22 -4.01 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 1.73 6.60 -2.39 -0.02 1.71 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 3.63 5.76 -2.39 -0.01 3.61 16 30 H 0.07 2.57 6.66 -2.38 -0.02 2.56 16 31 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.10 3.16 7.41 -2.39 -0.02 3.14 16 33 H 0.11 3.15 6.54 -2.39 -0.02 3.13 16 34 H 0.06 2.18 8.10 -2.39 -0.02 2.17 16 35 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 36 H 0.08 1.76 7.66 -2.39 -0.02 1.74 16 37 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16 38 H 0.14 2.59 6.30 -2.91 -0.02 2.57 16 39 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.63 8.09 -2.38 -0.02 0.61 16 42 H 0.08 0.66 5.94 -2.39 -0.01 0.64 16 43 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.09 0.81 5.94 -2.38 -0.01 0.80 16 45 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 46 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -73.76 371.59 6.23 -67.53 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.96 Total: 21.29 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 5.56 Total: -11.80 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -1.34 Total: -73.34 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.99 Total: -48.69 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.76 6.23 -67.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081932920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.881 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.75 seconds