Wall clock time and date at job start Tue Mar 31 2020 08:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47206 * 2 1 4 4 C 1.46501 * 119.99638 * 269.99883 * 3 2 1 5 5 C 1.50705 * 109.47101 * 269.99832 * 4 3 2 6 6 H 1.07995 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00079 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47199 * 90.00318 * 9 7 5 11 11 H 1.48503 * 109.47435 * 209.99994 * 9 7 5 12 12 H 1.48497 * 109.47452 * 330.00233 * 9 7 5 13 13 C 1.34770 * 119.99889 * 89.99831 * 3 2 1 14 14 O 1.21288 * 119.99698 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00539 * 359.97438 * 13 3 2 16 16 C 1.52991 * 109.47331 * 179.97438 * 15 13 3 17 17 H 1.09007 * 109.47426 * 55.00292 * 16 15 13 18 18 C 1.52998 * 109.47625 * 295.00148 * 16 15 13 19 19 C 1.50703 * 109.47420 * 174.99853 * 16 15 13 20 20 C 1.38294 * 119.97003 * 60.01980 * 19 16 15 21 21 C 1.38232 * 120.11124 * 179.97438 * 20 19 16 22 22 C 1.38173 * 120.05823 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94203 * 359.76822 * 22 21 20 24 24 O 1.35904 * 120.05924 * 180.25551 * 23 22 21 25 25 C 1.42903 * 116.99671 * 0.25297 * 24 23 22 26 26 C 1.38122 * 119.97497 * 240.00651 * 19 16 15 27 27 H 1.09007 * 109.46810 * 60.00040 * 1 2 3 28 28 H 1.08996 * 109.47417 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47314 * 300.00580 * 1 2 3 30 30 H 1.09003 * 109.47441 * 239.99667 * 2 1 3 31 31 H 1.08999 * 109.46705 * 119.99613 * 2 1 3 32 32 H 1.09004 * 109.47328 * 29.99619 * 4 3 2 33 33 H 1.08998 * 109.47319 * 150.00036 * 4 3 2 34 34 H 0.97003 * 119.99888 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46738 * 59.99713 * 15 13 3 36 36 H 1.09000 * 109.46655 * 300.00092 * 15 13 3 37 37 H 1.09007 * 109.46905 * 59.99568 * 18 16 15 38 38 H 1.08995 * 109.47581 * 180.02562 * 18 16 15 39 39 H 1.09007 * 109.46836 * 300.00506 * 18 16 15 40 40 H 1.08003 * 119.94130 * 0.02562 * 20 19 16 41 41 H 1.08008 * 119.97134 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.02588 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.46945 * 300.00498 * 25 24 23 44 44 H 1.09006 * 109.46787 * 59.99781 * 25 24 23 45 45 H 1.08998 * 109.47112 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.02504 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6171 9 14 5.9139 2.0973 -3.4163 10 1 5.9778 0.8766 -4.2595 11 1 6.3930 3.2650 -4.1988 12 1 6.7738 1.9174 -2.2190 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9912 1.3064 2.4723 16 6 2.3234 2.2436 3.6351 17 1 1.7584 3.1697 3.5283 18 6 3.8211 2.5560 3.6267 19 6 1.9562 1.5787 4.9368 20 6 2.5500 0.3814 5.2926 21 6 2.2158 -0.2307 6.4861 22 6 1.2877 0.3529 7.3271 23 6 0.6948 1.5564 6.9750 24 8 -0.2145 2.1351 7.8029 25 6 -0.5085 1.4515 9.0228 26 6 1.0273 2.1658 5.7736 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1386 34 1 3.6761 3.5182 -4.4427 35 1 2.6211 0.4187 2.5302 36 1 0.9431 1.0127 2.5298 37 1 4.0866 3.0369 2.6852 38 1 4.0577 3.2233 4.4554 39 1 4.3860 1.6299 3.7336 40 1 3.2765 -0.0757 4.6371 41 1 2.6812 -1.1655 6.7619 42 1 1.0273 -0.1255 8.2596 43 1 -0.9054 0.4615 8.7979 44 1 0.4029 1.3521 9.6124 45 1 -1.2469 2.0194 9.5888 46 1 0.5638 3.1007 5.4952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084633717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:12 Heat of formation + Delta-G solvation = -62.364964 kcal Electronic energy + Delta-G solvation = -25021.768279 eV Core-core repulsion = 21490.370351 eV Total energy + Delta-G solvation = -3531.397927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 6.32 seconds Orbital eigenvalues (eV) -40.38926 -39.27032 -37.86992 -35.43975 -34.39106 -32.75415 -30.95839 -30.07086 -29.47123 -28.16244 -27.52353 -26.36289 -23.55467 -22.94747 -22.69934 -22.25370 -20.15884 -18.14908 -17.75811 -16.55026 -16.39350 -16.25269 -16.03616 -15.94934 -15.41176 -14.76481 -14.50920 -14.18713 -13.86867 -13.57571 -13.36899 -13.27946 -13.06845 -12.70529 -12.52214 -12.41894 -12.13175 -11.96389 -11.68805 -11.66327 -11.32616 -11.25754 -11.19185 -10.87340 -10.85132 -10.79166 -10.62531 -10.55454 -10.39159 -10.08370 -9.59739 -8.92297 -8.73191 -8.41091 -8.30046 -7.60186 -6.01706 -4.06202 1.22419 1.35429 3.05897 3.31224 3.37931 3.41515 3.51033 3.64910 4.00812 4.46580 4.61389 4.67452 4.84516 4.85114 4.93589 5.05611 5.16616 5.21884 5.27420 5.30501 5.34163 5.37140 5.41523 5.53357 5.68130 5.72650 5.81374 5.87127 5.92028 6.00978 6.11012 6.17147 6.21756 6.27157 6.33289 6.35676 6.53350 6.60166 6.68427 6.80086 7.12126 7.23879 7.49212 7.60806 7.95254 8.27151 8.49459 8.93960 9.16850 9.58923 11.06317 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.002940 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.425707 B = 9521.602589 C = 9847.081239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.539 6.539 15 C -0.132 4.132 16 C -0.037 4.037 17 H 0.087 0.913 18 C -0.148 4.148 19 C -0.028 4.028 20 C -0.150 4.150 21 C -0.080 4.080 22 C -0.218 4.218 23 C 0.125 3.875 24 O -0.319 6.319 25 C 0.029 3.971 26 C -0.148 4.148 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -8.783 21.814 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.418 6.418 15 C -0.172 4.172 16 C -0.055 4.055 17 H 0.105 0.895 18 C -0.205 4.205 19 C -0.028 4.028 20 C -0.168 4.168 21 C -0.098 4.098 22 C -0.236 4.236 23 C 0.080 3.920 24 O -0.233 6.233 25 C -0.067 4.067 26 C -0.167 4.167 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.744 -7.885 21.592 23.956 hybrid contribution 0.920 -0.574 -0.175 1.098 sum -5.824 -8.459 21.417 23.752 Atomic orbital electron populations 1.22220 0.96901 1.01336 1.02302 1.21398 0.93445 0.84336 1.02565 1.48266 1.63727 1.13194 1.07827 1.19252 0.96158 0.93660 0.78278 1.21434 0.96954 1.31687 1.06168 0.92524 1.24936 0.97790 0.94982 0.96460 1.69936 1.35671 1.33474 1.14363 0.86516 0.84796 0.77633 0.78580 1.20703 1.21124 1.19900 1.20277 0.78380 0.86964 0.85093 1.90630 1.45802 1.18167 1.87153 1.21788 1.03053 0.99423 0.92975 1.19920 0.98591 0.98061 0.88961 0.89460 1.21959 0.93414 1.01316 1.03812 1.19818 0.93636 0.94037 0.95352 1.20969 1.02066 0.96248 0.97554 1.20899 0.96044 0.99115 0.93750 1.21161 1.02911 0.97235 1.02334 1.19002 0.90039 0.92144 0.90784 1.86076 1.57239 1.49037 1.30914 1.23024 1.01115 0.97950 0.84568 1.20378 1.01282 1.02041 0.92979 0.92105 0.92270 0.93032 0.90109 0.91732 0.95181 0.93907 0.92772 0.89444 0.89583 0.89399 0.93150 0.93282 0.85752 0.85946 0.85858 0.92740 0.92780 0.88379 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.56 2.46 -175.05 -0.43 -12.99 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 10.29 7.39 -10.99 -0.08 10.21 16 14 O -0.54 -13.12 13.55 5.55 0.08 -13.05 16 15 C -0.13 -1.96 3.47 -27.89 -0.10 -2.06 16 16 C -0.04 -0.52 2.21 -91.78 -0.20 -0.73 16 17 H 0.09 1.35 7.69 -51.92 -0.40 0.95 16 18 C -0.15 -2.22 8.75 37.16 0.32 -1.90 16 19 C -0.03 -0.35 4.78 -104.64 -0.50 -0.85 16 20 C -0.15 -1.69 8.76 -39.56 -0.35 -2.03 16 21 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 22 C -0.22 -2.18 9.04 -39.43 -0.36 -2.54 16 23 C 0.13 1.46 6.69 -39.22 -0.26 1.20 16 24 O -0.32 -3.50 10.50 -19.44 -0.20 -3.71 16 25 C 0.03 0.19 9.81 101.05 0.99 1.18 16 26 C -0.15 -1.86 9.61 -39.43 -0.38 -2.24 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.16 6.83 -51.93 -0.35 0.80 16 36 H 0.09 1.14 7.18 -51.93 -0.37 0.77 16 37 H 0.09 1.63 5.95 -51.93 -0.31 1.32 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.66 7.38 -51.92 -0.38 0.28 16 40 H 0.12 1.28 7.16 -52.48 -0.38 0.90 16 41 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.12 0.94 6.30 -52.49 -0.33 0.61 16 43 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 44 H 0.05 0.30 7.67 -51.93 -0.40 -0.09 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.13 1.59 7.94 -52.49 -0.42 1.17 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -33.22 373.09 -7.95 -41.17 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.33 Total: 0.36 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.40 Total: -8.32 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.31 Total: -38.99 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.13 Total: -16.75 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.22 -7.95 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084633717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.195 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.32 seconds