Wall clock time and date at job start Tue Mar 31 2020 08:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47206 * 2 1 4 4 C 1.46501 * 119.99638 * 269.99883 * 3 2 1 5 5 C 1.50705 * 109.47101 * 269.99832 * 4 3 2 6 6 H 1.07995 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00079 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47199 * 90.00318 * 9 7 5 11 11 H 1.48503 * 109.47435 * 209.99994 * 9 7 5 12 12 H 1.48497 * 109.47452 * 330.00233 * 9 7 5 13 13 C 1.34770 * 119.99889 * 89.99831 * 3 2 1 14 14 O 1.21288 * 119.99698 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00539 * 359.97438 * 13 3 2 16 16 C 1.52991 * 109.47331 * 179.97438 * 15 13 3 17 17 H 1.09007 * 109.47426 * 55.00292 * 16 15 13 18 18 C 1.52998 * 109.47625 * 295.00148 * 16 15 13 19 19 C 1.50703 * 109.47420 * 174.99853 * 16 15 13 20 20 C 1.38294 * 119.97003 * 60.01980 * 19 16 15 21 21 C 1.38232 * 120.11124 * 179.97438 * 20 19 16 22 22 C 1.38173 * 120.05823 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94203 * 359.76822 * 22 21 20 24 24 O 1.35904 * 120.05924 * 180.25551 * 23 22 21 25 25 C 1.42903 * 116.99671 * 0.25297 * 24 23 22 26 26 C 1.38122 * 119.97497 * 240.00651 * 19 16 15 27 27 H 1.09007 * 109.46810 * 60.00040 * 1 2 3 28 28 H 1.08996 * 109.47417 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47314 * 300.00580 * 1 2 3 30 30 H 1.09003 * 109.47441 * 239.99667 * 2 1 3 31 31 H 1.08999 * 109.46705 * 119.99613 * 2 1 3 32 32 H 1.09004 * 109.47328 * 29.99619 * 4 3 2 33 33 H 1.08998 * 109.47319 * 150.00036 * 4 3 2 34 34 H 0.97003 * 119.99888 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46738 * 59.99713 * 15 13 3 36 36 H 1.09000 * 109.46655 * 300.00092 * 15 13 3 37 37 H 1.09007 * 109.46905 * 59.99568 * 18 16 15 38 38 H 1.08995 * 109.47581 * 180.02562 * 18 16 15 39 39 H 1.09007 * 109.46836 * 300.00506 * 18 16 15 40 40 H 1.08003 * 119.94130 * 0.02562 * 20 19 16 41 41 H 1.08008 * 119.97134 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.02588 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.46945 * 300.00498 * 25 24 23 44 44 H 1.09006 * 109.46787 * 59.99781 * 25 24 23 45 45 H 1.08998 * 109.47112 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.02504 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6171 9 14 5.9139 2.0973 -3.4163 10 1 5.9778 0.8766 -4.2595 11 1 6.3930 3.2650 -4.1988 12 1 6.7738 1.9174 -2.2190 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9912 1.3064 2.4723 16 6 2.3234 2.2436 3.6351 17 1 1.7584 3.1697 3.5283 18 6 3.8211 2.5560 3.6267 19 6 1.9562 1.5787 4.9368 20 6 2.5500 0.3814 5.2926 21 6 2.2158 -0.2307 6.4861 22 6 1.2877 0.3529 7.3271 23 6 0.6948 1.5564 6.9750 24 8 -0.2145 2.1351 7.8029 25 6 -0.5085 1.4515 9.0228 26 6 1.0273 2.1658 5.7736 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1386 34 1 3.6761 3.5182 -4.4427 35 1 2.6211 0.4187 2.5302 36 1 0.9431 1.0127 2.5298 37 1 4.0866 3.0369 2.6852 38 1 4.0577 3.2233 4.4554 39 1 4.3860 1.6299 3.7336 40 1 3.2765 -0.0757 4.6371 41 1 2.6812 -1.1655 6.7619 42 1 1.0273 -0.1255 8.2596 43 1 -0.9054 0.4615 8.7979 44 1 0.4029 1.3521 9.6124 45 1 -1.2469 2.0194 9.5888 46 1 0.5638 3.1007 5.4952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084633717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:04 Heat of formation + Delta-G solvation = -81.675521 kcal Electronic energy + Delta-G solvation = -25022.605647 eV Core-core repulsion = 21490.370351 eV Total energy + Delta-G solvation = -3532.235296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 5.65 seconds Orbital eigenvalues (eV) -41.30766 -40.67848 -38.80274 -37.01382 -35.57939 -34.84749 -31.82476 -31.57134 -30.49737 -29.59248 -28.11006 -28.08348 -25.13433 -24.31102 -23.66372 -23.48958 -21.18028 -19.68287 -18.71425 -18.54212 -17.73896 -17.35275 -17.07918 -16.78444 -16.60404 -16.36941 -15.97212 -15.56929 -14.88292 -14.66766 -14.50851 -14.45168 -14.38416 -13.99695 -13.85261 -13.54354 -13.32070 -13.26519 -13.09731 -12.93273 -12.74308 -12.65517 -12.52783 -12.26314 -12.21196 -12.08962 -11.93747 -11.78890 -11.71235 -11.60124 -11.56078 -10.63063 -10.43434 -9.75410 -9.38241 -9.10502 -8.20834 -6.35646 0.38726 0.53640 1.36466 1.39697 1.49973 1.90995 2.31192 2.39369 2.50762 2.84200 3.08382 3.60353 3.83691 3.97235 4.00558 4.10683 4.18683 4.27734 4.32933 4.41931 4.42389 4.45798 4.50460 4.60736 4.62302 4.69790 4.70379 4.76125 4.88544 4.95674 5.00580 5.06465 5.08536 5.10688 5.22406 5.26543 5.36860 5.40739 5.43738 5.56892 5.61243 5.74159 5.88356 5.90748 6.08965 6.50668 6.72553 6.86428 7.30702 7.56162 8.86132 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.002940 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.425707 B = 9521.602589 C = 9847.081239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.262 3.738 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.496 3.504 14 O -0.590 6.590 15 C -0.115 4.115 16 C -0.031 4.031 17 H 0.063 0.937 18 C -0.143 4.143 19 C -0.035 4.035 20 C -0.155 4.155 21 C -0.075 4.075 22 C -0.213 4.213 23 C 0.115 3.885 24 O -0.342 6.342 25 C 0.019 3.981 26 C -0.170 4.170 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.019 0.981 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -12.097 24.158 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.140 3.860 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.286 3.714 14 O -0.472 6.472 15 C -0.155 4.155 16 C -0.050 4.050 17 H 0.082 0.918 18 C -0.200 4.200 19 C -0.035 4.035 20 C -0.173 4.173 21 C -0.093 4.093 22 C -0.232 4.232 23 C 0.070 3.930 24 O -0.256 6.256 25 C -0.075 4.075 26 C -0.189 4.189 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.037 0.963 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.155 0.845 41 H 0.171 0.829 42 H 0.168 0.832 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.317 -11.246 23.959 27.211 hybrid contribution 0.703 0.476 -0.811 1.174 sum -5.614 -10.771 23.148 26.141 Atomic orbital electron populations 1.22157 0.94881 1.03430 1.01507 1.21732 0.95097 0.81483 1.03917 1.48308 1.63993 1.15085 1.06293 1.18677 0.95248 0.91458 0.80603 1.21704 0.97826 1.31745 1.06411 0.92766 1.25882 1.02426 0.94534 0.96513 1.70064 1.37826 1.34305 1.14842 0.85412 0.79007 0.78132 0.78238 1.18793 1.20793 1.19621 1.21305 0.77005 0.86606 0.86533 1.90611 1.47879 1.20668 1.88005 1.21751 1.04940 0.99491 0.89292 1.19764 0.97648 0.97356 0.90198 0.91801 1.21868 0.94400 1.01969 1.01765 1.19534 0.94660 0.94914 0.94382 1.21142 1.02097 0.95613 0.98471 1.21257 0.95367 0.99859 0.92801 1.21497 1.02083 0.96343 1.03247 1.19123 0.90440 0.92784 0.90627 1.86050 1.57091 1.50193 1.32255 1.23330 1.02256 0.98693 0.83234 1.20411 1.02102 1.02207 0.94131 0.94460 0.88631 0.92314 0.91073 0.87997 0.96346 0.98722 0.92494 0.86719 0.87302 0.93470 0.92495 0.91400 0.84530 0.82891 0.83216 0.91498 0.91631 0.86699 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 10.24 71.98 0.74 -3.39 16 2 C 0.10 3.07 5.93 86.38 0.51 3.58 16 3 N -0.61 -25.97 2.46 -826.13 -2.03 -27.99 16 4 C 0.26 14.43 5.16 85.63 0.44 14.87 16 5 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.29 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 9 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.50 20.68 7.39 87.66 0.65 21.33 16 14 O -0.59 -30.55 13.55 -3.05 -0.04 -30.59 16 15 C -0.12 -3.27 3.47 29.84 0.10 -3.17 16 16 C -0.03 -0.88 2.21 -11.54 -0.03 -0.90 16 17 H 0.06 2.10 7.69 -2.38 -0.02 2.08 16 18 C -0.14 -4.34 8.75 71.98 0.63 -3.71 16 19 C -0.03 -0.83 4.78 -19.88 -0.10 -0.92 16 20 C -0.16 -2.98 8.76 22.28 0.20 -2.79 16 21 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16 22 C -0.21 -3.54 9.04 22.37 0.20 -3.34 16 23 C 0.12 2.50 6.69 22.51 0.15 2.65 16 24 O -0.34 -7.04 10.50 -92.47 -0.97 -8.01 16 25 C 0.02 0.20 9.81 113.37 1.11 1.32 16 26 C -0.17 -4.20 9.61 22.37 0.21 -3.99 16 27 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.41 7.22 -2.39 -0.02 1.40 16 30 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.10 2.37 6.44 -2.39 -0.02 2.36 16 32 H 0.02 1.04 8.07 -2.38 -0.02 1.02 16 33 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.11 2.66 6.83 -2.39 -0.02 2.64 16 36 H 0.11 2.63 7.18 -2.39 -0.02 2.62 16 37 H 0.05 1.83 5.95 -2.38 -0.01 1.82 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.75 7.38 -2.38 -0.02 1.73 16 40 H 0.14 2.25 7.16 -2.91 -0.02 2.23 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.15 1.62 6.30 -2.91 -0.02 1.60 16 43 H 0.07 0.54 7.65 -2.39 -0.02 0.53 16 44 H 0.07 0.54 7.67 -2.38 -0.02 0.53 16 45 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.12 3.06 7.94 -2.91 -0.02 3.03 16 Total: -1.00 -77.10 373.09 5.98 -71.12 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.96 Total: 14.86 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.75 Total: -9.83 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.74 Total: -85.02 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.01 Total: -38.59 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -77.10 5.98 -71.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084633717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.555 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.65 seconds