Wall clock time and date at job start Tue Mar 31 2020 09:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47253 * 2 1 4 4 C 1.42892 * 113.99942 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.91266 * 341.25418 * 4 3 2 6 6 C 1.53955 * 113.66668 * 112.55289 * 4 3 2 7 7 C 1.53778 * 87.11361 * 139.89129 * 6 4 3 8 8 H 1.09002 * 113.61419 * 89.18802 * 7 6 4 9 9 N 1.46504 * 113.69079 * 220.08068 * 7 6 4 10 10 C 1.39783 * 120.00001 * 252.52930 * 9 7 6 11 11 C 1.38946 * 120.00409 * 359.73404 * 10 9 7 12 12 C 1.38020 * 119.99224 * 179.71813 * 11 10 9 13 13 C 1.38896 * 120.00551 * 0.54841 * 12 11 10 14 14 O 1.35791 * 119.99900 * 179.70526 * 13 12 11 15 15 C 1.34810 * 117.00588 * 174.48034 * 14 13 12 16 16 H 1.07996 * 119.99657 * 5.06000 * 15 14 13 17 17 C 1.38616 * 120.00006 * 185.05284 * 15 14 13 18 18 N 1.31581 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99737 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46647 * 90.00328 * 19 17 15 21 21 H 1.48493 * 109.47074 * 210.00153 * 19 17 15 22 22 H 1.48498 * 109.47157 * 330.00429 * 19 17 15 23 23 C 1.38898 * 120.00947 * 359.72373 * 13 12 11 24 24 C 1.38015 * 120.00851 * 359.97438 * 23 13 12 25 25 C 1.53781 * 87.08222 * 334.63853 * 7 6 4 26 26 C 1.53003 * 113.61812 * 139.97844 * 25 7 6 27 27 C 1.52994 * 113.61580 * 270.80387 * 25 7 6 28 28 H 1.09003 * 109.46865 * 59.99830 * 1 2 3 29 29 H 1.08999 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47538 * 299.99985 * 1 2 3 31 31 H 1.09009 * 109.46978 * 239.99739 * 2 1 3 32 32 H 1.09003 * 109.46865 * 120.00170 * 2 1 3 33 33 H 1.08994 * 113.53943 * 25.33592 * 6 4 3 34 34 H 1.09007 * 113.66527 * 254.45892 * 6 4 3 35 35 H 0.96999 * 119.99611 * 72.53703 * 9 7 6 36 36 H 1.07996 * 120.00823 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.99757 * 180.24981 * 12 11 10 38 38 H 0.96999 * 120.00147 * 179.97438 * 18 17 15 39 39 H 1.08003 * 119.99907 * 180.02562 * 23 13 12 40 40 H 1.08005 * 120.00322 * 179.97438 * 24 23 13 41 41 H 1.08997 * 109.47480 * 181.53487 * 26 25 7 42 42 H 1.09005 * 109.47007 * 301.53770 * 26 25 7 43 43 H 1.09002 * 109.46921 * 61.53101 * 26 25 7 44 44 H 1.09000 * 109.47211 * 298.46669 * 27 25 7 45 45 H 1.09001 * 109.47451 * 58.46922 * 27 25 7 46 46 H 1.09006 * 109.47340 * 178.46950 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.9288 0.5458 0.3236 6 6 4.0048 2.0477 -1.3015 7 6 4.9902 2.8339 -0.4208 8 1 5.9152 2.2959 -0.2131 9 7 5.2207 4.2070 -0.8765 10 6 6.4373 4.5505 -1.4729 11 6 7.4302 3.5910 -1.6286 12 6 8.6292 3.9291 -2.2228 13 6 8.8476 5.2309 -2.6549 14 8 10.0296 5.5648 -3.2340 15 6 10.1356 6.8123 -3.7338 16 1 9.3333 7.5211 -3.5912 17 6 11.2744 7.1854 -4.4306 18 7 12.2517 6.3217 -4.6046 19 14 11.4209 8.9139 -5.1236 20 1 12.0503 9.8009 -4.1124 21 1 12.2597 8.8865 -6.3487 22 1 10.0692 9.4283 -5.4606 23 6 7.8574 6.1916 -2.4942 24 6 6.6558 5.8526 -1.9057 25 6 3.9484 2.7252 0.7052 26 6 4.5593 2.4538 2.0814 27 6 2.9392 3.8750 0.7194 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.3004 2.6809 -1.8409 34 1 4.4856 1.3074 -1.9410 35 1 4.5291 4.8778 -0.7642 36 1 7.2623 2.5799 -1.2885 37 1 9.3994 3.1824 -2.3475 38 1 13.0484 6.5826 -5.0925 39 1 8.0272 7.2037 -2.8306 40 1 5.8860 6.5998 -1.7804 41 1 3.7635 2.3628 2.8207 42 1 5.1322 1.5271 2.0483 43 1 5.2175 3.2782 2.3558 44 1 3.4635 4.8168 0.8812 45 1 2.4152 3.9104 -0.2358 46 1 2.2196 3.7171 1.5228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085380093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:40 Heat of formation + Delta-G solvation = -26.433202 kcal Electronic energy + Delta-G solvation = -24653.182833 eV Core-core repulsion = 21123.343024 eV Total energy + Delta-G solvation = -3529.839809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55588 -38.84823 -37.32758 -36.35961 -33.20443 -31.95289 -31.36554 -30.55410 -30.04977 -27.82011 -27.09679 -25.27026 -23.83366 -23.04999 -22.60511 -21.91711 -20.65099 -18.72736 -17.63803 -17.35628 -16.86774 -16.34360 -15.88592 -15.44743 -15.09020 -14.42436 -14.38236 -14.05478 -13.62935 -13.47549 -13.43506 -13.28038 -12.93557 -12.72106 -12.59617 -12.47803 -12.39781 -12.19326 -12.16528 -11.86422 -11.57080 -11.51337 -11.38887 -11.26787 -11.00210 -10.87643 -10.64314 -10.50683 -10.45597 -10.30536 -9.49536 -9.20963 -9.10506 -8.40443 -8.14625 -6.36436 -6.30151 -3.87509 2.22875 2.59285 3.19737 3.20631 3.25171 3.36493 3.99611 4.07955 4.24577 4.34566 4.58571 4.65408 4.75087 4.85234 4.89146 5.05221 5.07465 5.11461 5.22124 5.30287 5.35751 5.47715 5.51359 5.55005 5.59253 5.67796 5.71532 5.75993 5.80542 5.82551 5.84815 5.86562 5.95980 6.18207 6.21551 6.25202 6.32573 6.57767 6.88935 6.94704 7.06644 7.16520 7.34873 7.48243 7.67638 8.01927 8.14143 8.28557 9.15606 9.90445 10.88362 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035044 B = 0.002395 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.797255 B =11685.828416 C =11784.962948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.173 4.173 7 C 0.151 3.849 8 H 0.104 0.896 9 N -0.742 5.742 10 C 0.125 3.875 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.113 3.887 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.869 5.869 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.190 4.190 24 C -0.142 4.142 25 C -0.091 4.091 26 C -0.137 4.137 27 C -0.119 4.119 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.393 0.607 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.267 0.733 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.335 -10.269 10.875 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.288 6.288 4 C 0.012 3.988 5 H 0.104 0.896 6 C -0.213 4.213 7 C 0.043 3.957 8 H 0.122 0.878 9 N -0.376 5.376 10 C 0.027 3.973 11 C -0.168 4.168 12 C -0.170 4.170 13 C 0.060 3.940 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.168 4.168 18 N -0.506 5.506 19 Si 0.763 3.237 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.209 4.209 24 C -0.164 4.164 25 C -0.092 4.092 26 C -0.194 4.194 27 C -0.176 4.176 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.228 0.772 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.965 -10.393 10.749 24.943 hybrid contribution -0.070 0.852 -0.356 0.926 sum -20.035 -9.541 10.393 24.504 Atomic orbital electron populations 1.21738 0.93945 1.02087 1.03056 1.22490 0.95472 0.84332 0.99869 1.87942 1.20490 1.25748 1.94577 1.23673 0.81057 0.97148 0.96904 0.89605 1.24117 0.99484 1.00396 0.97306 1.21931 0.96148 0.84654 0.92948 0.87831 1.44157 1.15473 1.09115 1.68878 1.17418 0.86847 0.93477 0.99577 1.20187 0.93519 0.97841 1.05272 1.20026 0.97737 0.94425 1.04811 1.19236 0.86984 0.92834 0.94900 1.83983 1.27335 1.32585 1.65490 1.21226 1.04473 0.86596 1.33964 0.89475 1.25214 0.94997 0.99653 0.96889 1.70049 1.06590 1.34439 1.39528 0.85767 0.78619 0.80804 0.78528 1.20080 1.20430 1.19378 1.20989 0.94081 1.00321 1.05554 1.20230 0.97828 0.94151 1.04228 1.22578 0.95945 0.95507 0.95158 1.21749 1.00486 1.01748 0.95438 1.21328 0.97518 0.96238 1.02561 0.91887 0.91299 0.91960 0.93488 0.93586 0.89058 0.91206 0.77204 0.87182 0.86582 0.92335 0.85543 0.87687 0.92546 0.92598 0.91891 0.92409 0.91938 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.42 6.50 37.16 0.24 0.67 16 3 O -0.37 -3.71 9.48 -35.23 -0.33 -4.04 16 4 C 0.07 0.67 3.74 -25.82 -0.10 0.57 16 5 H 0.09 0.71 7.72 -51.93 -0.40 0.30 16 6 C -0.17 -1.86 7.37 -25.83 -0.19 -2.05 16 7 C 0.15 1.72 3.50 -67.12 -0.24 1.49 16 8 H 0.10 1.21 6.08 -51.93 -0.32 0.89 16 9 N -0.74 -10.01 5.41 -51.33 -0.28 -10.29 16 10 C 0.12 2.15 6.66 -83.71 -0.56 1.59 16 11 C -0.15 -2.65 9.26 -39.40 -0.36 -3.01 16 12 C -0.15 -3.22 9.98 -39.42 -0.39 -3.62 16 13 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 14 O -0.19 -5.52 9.75 -0.02 0.00 -5.52 16 15 C -0.39 -11.05 9.48 30.87 0.29 -10.76 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 18 N -0.87 -26.17 13.67 55.48 0.76 -25.41 16 19 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.19 -4.20 9.16 -39.42 -0.36 -4.56 16 24 C -0.14 -2.65 9.89 -39.40 -0.39 -3.04 16 25 C -0.09 -0.88 1.34 -153.70 -0.21 -1.09 16 26 C -0.14 -1.22 9.18 37.16 0.34 -0.87 16 27 C -0.12 -1.15 7.36 37.15 0.27 -0.87 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 1.07 7.64 -51.93 -0.40 0.68 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.39 4.83 6.71 -40.82 -0.27 4.56 16 36 H 0.11 1.69 6.04 -52.49 -0.32 1.37 16 37 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 40 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.45 7.98 -51.93 -0.41 0.03 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.55 7.20 -51.93 -0.37 0.17 16 45 H 0.06 0.64 7.22 -51.93 -0.38 0.26 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -31.52 370.15 -8.14 -39.65 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.22 Total: 6.69 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -1.62 Total: -22.73 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.48 Total: -35.70 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.33 Total: -9.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.52 -8.14 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085380093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.222 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds