Wall clock time and date at job start Tue Mar 31 2020 09:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47253 * 2 1 4 4 C 1.42892 * 113.99942 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.91266 * 341.25418 * 4 3 2 6 6 C 1.53955 * 113.66668 * 112.55289 * 4 3 2 7 7 C 1.53778 * 87.11361 * 139.89129 * 6 4 3 8 8 H 1.09002 * 113.61419 * 89.18802 * 7 6 4 9 9 N 1.46504 * 113.69079 * 220.08068 * 7 6 4 10 10 C 1.39783 * 120.00001 * 252.52930 * 9 7 6 11 11 C 1.38946 * 120.00409 * 359.73404 * 10 9 7 12 12 C 1.38020 * 119.99224 * 179.71813 * 11 10 9 13 13 C 1.38896 * 120.00551 * 0.54841 * 12 11 10 14 14 O 1.35791 * 119.99900 * 179.70526 * 13 12 11 15 15 C 1.34810 * 117.00588 * 174.48034 * 14 13 12 16 16 H 1.07996 * 119.99657 * 5.06000 * 15 14 13 17 17 C 1.38616 * 120.00006 * 185.05284 * 15 14 13 18 18 N 1.31581 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99737 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46647 * 90.00328 * 19 17 15 21 21 H 1.48493 * 109.47074 * 210.00153 * 19 17 15 22 22 H 1.48498 * 109.47157 * 330.00429 * 19 17 15 23 23 C 1.38898 * 120.00947 * 359.72373 * 13 12 11 24 24 C 1.38015 * 120.00851 * 359.97438 * 23 13 12 25 25 C 1.53781 * 87.08222 * 334.63853 * 7 6 4 26 26 C 1.53003 * 113.61812 * 139.97844 * 25 7 6 27 27 C 1.52994 * 113.61580 * 270.80387 * 25 7 6 28 28 H 1.09003 * 109.46865 * 59.99830 * 1 2 3 29 29 H 1.08999 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47538 * 299.99985 * 1 2 3 31 31 H 1.09009 * 109.46978 * 239.99739 * 2 1 3 32 32 H 1.09003 * 109.46865 * 120.00170 * 2 1 3 33 33 H 1.08994 * 113.53943 * 25.33592 * 6 4 3 34 34 H 1.09007 * 113.66527 * 254.45892 * 6 4 3 35 35 H 0.96999 * 119.99611 * 72.53703 * 9 7 6 36 36 H 1.07996 * 120.00823 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.99757 * 180.24981 * 12 11 10 38 38 H 0.96999 * 120.00147 * 179.97438 * 18 17 15 39 39 H 1.08003 * 119.99907 * 180.02562 * 23 13 12 40 40 H 1.08005 * 120.00322 * 179.97438 * 24 23 13 41 41 H 1.08997 * 109.47480 * 181.53487 * 26 25 7 42 42 H 1.09005 * 109.47007 * 301.53770 * 26 25 7 43 43 H 1.09002 * 109.46921 * 61.53101 * 26 25 7 44 44 H 1.09000 * 109.47211 * 298.46669 * 27 25 7 45 45 H 1.09001 * 109.47451 * 58.46922 * 27 25 7 46 46 H 1.09006 * 109.47340 * 178.46950 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.9288 0.5458 0.3236 6 6 4.0048 2.0477 -1.3015 7 6 4.9902 2.8339 -0.4208 8 1 5.9152 2.2959 -0.2131 9 7 5.2207 4.2070 -0.8765 10 6 6.4373 4.5505 -1.4729 11 6 7.4302 3.5910 -1.6286 12 6 8.6292 3.9291 -2.2228 13 6 8.8476 5.2309 -2.6549 14 8 10.0296 5.5648 -3.2340 15 6 10.1356 6.8123 -3.7338 16 1 9.3333 7.5211 -3.5912 17 6 11.2744 7.1854 -4.4306 18 7 12.2517 6.3217 -4.6046 19 14 11.4209 8.9139 -5.1236 20 1 12.0503 9.8009 -4.1124 21 1 12.2597 8.8865 -6.3487 22 1 10.0692 9.4283 -5.4606 23 6 7.8574 6.1916 -2.4942 24 6 6.6558 5.8526 -1.9057 25 6 3.9484 2.7252 0.7052 26 6 4.5593 2.4538 2.0814 27 6 2.9392 3.8750 0.7194 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.3004 2.6809 -1.8409 34 1 4.4856 1.3074 -1.9410 35 1 4.5291 4.8778 -0.7642 36 1 7.2623 2.5799 -1.2885 37 1 9.3994 3.1824 -2.3475 38 1 13.0484 6.5826 -5.0925 39 1 8.0272 7.2037 -2.8306 40 1 5.8860 6.5998 -1.7804 41 1 3.7635 2.3628 2.8207 42 1 5.1322 1.5271 2.0483 43 1 5.2175 3.2782 2.3558 44 1 3.4635 4.8168 0.8812 45 1 2.4152 3.9104 -0.2358 46 1 2.2196 3.7171 1.5228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085380093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:39 Heat of formation + Delta-G solvation = -45.229996 kcal Electronic energy + Delta-G solvation = -24653.997923 eV Core-core repulsion = 21123.343024 eV Total energy + Delta-G solvation = -3530.654899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46497 -40.50810 -38.58166 -37.57467 -34.69181 -33.84632 -31.98628 -31.84993 -31.18020 -28.99076 -28.22512 -27.18613 -24.96703 -23.79183 -23.40969 -23.34010 -22.21709 -19.99587 -19.16246 -18.89855 -17.89646 -17.73703 -16.62531 -16.48598 -16.20324 -16.07469 -15.52514 -15.44811 -15.34003 -14.89011 -14.43849 -14.25620 -14.18314 -14.04938 -13.69755 -13.42153 -13.36709 -13.30351 -13.13350 -13.04411 -12.84927 -12.75631 -12.60666 -12.27288 -12.23001 -12.14067 -12.07160 -11.62332 -11.48735 -11.32832 -11.06797 -10.83791 -10.22044 -10.09471 -9.76122 -8.38509 -7.90385 -6.01873 0.60252 0.94510 1.36895 1.46699 1.54282 2.23147 2.50758 2.91780 3.00449 3.25190 3.43473 3.57687 3.67408 3.83735 3.92965 4.13524 4.16925 4.22314 4.29863 4.32049 4.44678 4.52544 4.54530 4.59908 4.66416 4.73126 4.81176 4.86125 4.93500 4.98743 5.00480 5.06689 5.08881 5.11726 5.15393 5.16229 5.29548 5.30855 5.43459 5.45954 5.53145 5.57936 5.80284 6.01544 6.12569 6.39685 6.65786 7.03057 7.07778 7.94639 8.85987 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035044 B = 0.002395 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.797255 B =11685.828416 C =11784.962948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.384 6.384 4 C 0.077 3.923 5 H 0.103 0.897 6 C -0.172 4.172 7 C 0.140 3.860 8 H 0.108 0.892 9 N -0.729 5.729 10 C 0.154 3.846 11 C -0.144 4.144 12 C -0.154 4.154 13 C 0.061 3.939 14 O -0.242 6.242 15 C -0.405 4.405 16 H 0.098 0.902 17 C -0.030 4.030 18 N -0.927 5.927 19 Si 1.017 2.983 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.193 4.193 24 C -0.147 4.147 25 C -0.084 4.084 26 C -0.136 4.136 27 C -0.118 4.118 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.402 0.598 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.200 -10.700 12.262 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.304 6.304 4 C 0.019 3.981 5 H 0.121 0.879 6 C -0.212 4.212 7 C 0.033 3.967 8 H 0.125 0.875 9 N -0.362 5.362 10 C 0.054 3.946 11 C -0.166 4.166 12 C -0.174 4.174 13 C 0.012 3.988 14 O -0.151 6.151 15 C -0.481 4.481 16 H 0.115 0.885 17 C -0.226 4.226 18 N -0.566 5.566 19 Si 0.836 3.164 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.213 4.213 24 C -0.169 4.169 25 C -0.086 4.086 26 C -0.193 4.193 27 C -0.175 4.175 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.162 0.838 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.927 -10.857 12.187 28.144 hybrid contribution 0.474 0.769 -0.594 1.080 sum -22.454 -10.089 11.593 27.210 Atomic orbital electron populations 1.21750 0.93248 1.03138 1.02517 1.22679 0.96120 0.83407 1.00614 1.87926 1.20586 1.27277 1.94572 1.23638 0.81218 0.97602 0.95660 0.87925 1.24060 0.99059 1.00244 0.97847 1.22193 0.96980 0.83268 0.94254 0.87464 1.44265 1.14050 1.10573 1.67355 1.17540 0.87618 0.92663 0.96809 1.20465 0.92186 0.99654 1.04309 1.20245 0.99073 0.93354 1.04741 1.19741 0.87085 0.94805 0.97205 1.83930 1.30052 1.33086 1.67987 1.21735 1.05137 0.87111 1.34138 0.88512 1.26527 0.94307 1.04651 0.97108 1.70204 1.07604 1.37228 1.41605 0.84612 0.79253 0.74674 0.77819 1.18930 1.19772 1.17814 1.21042 0.94901 0.99510 1.05838 1.20481 0.97217 0.95640 1.03610 1.22525 0.95162 0.95801 0.95082 1.21745 1.00677 1.01976 0.94888 1.21310 0.97555 0.96277 1.02355 0.92669 0.89505 0.92224 0.93135 0.92396 0.90097 0.90935 0.76112 0.83827 0.86857 0.92181 0.86450 0.84575 0.91772 0.91562 0.92637 0.92278 0.92635 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.86 16 2 C 0.05 0.61 6.50 71.98 0.47 1.08 16 3 O -0.38 -6.69 9.48 -148.98 -1.41 -8.10 16 4 C 0.08 1.22 3.74 31.18 0.12 1.33 16 5 H 0.10 1.29 7.72 -2.39 -0.02 1.27 16 6 C -0.17 -3.21 7.37 31.18 0.23 -2.98 16 7 C 0.14 2.72 3.50 45.52 0.16 2.88 16 8 H 0.11 2.08 6.08 -2.39 -0.01 2.06 16 9 N -0.73 -17.30 5.41 -316.31 -1.71 -19.02 16 10 C 0.15 4.94 6.66 38.21 0.25 5.19 16 11 C -0.14 -4.95 9.26 22.39 0.21 -4.74 16 12 C -0.15 -6.73 9.98 22.38 0.22 -6.51 16 13 C 0.06 3.14 6.65 22.59 0.15 3.29 16 14 O -0.24 -15.06 9.75 -23.00 -0.22 -15.29 16 15 C -0.40 -24.30 9.48 67.91 0.64 -23.66 16 16 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 17 C -0.03 -1.75 5.49 84.82 0.47 -1.29 16 18 N -0.93 -58.58 13.67 21.61 0.30 -58.29 16 19 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 23 C -0.19 -8.67 9.16 22.38 0.20 -8.47 16 24 C -0.15 -5.23 9.89 22.39 0.22 -5.01 16 25 C -0.08 -1.37 1.34 -51.65 -0.07 -1.44 16 26 C -0.14 -1.96 9.18 71.98 0.66 -1.30 16 27 C -0.12 -1.94 7.36 71.98 0.53 -1.41 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 1.71 7.64 -2.39 -0.02 1.69 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.40 8.49 6.71 -92.71 -0.62 7.87 16 36 H 0.14 3.93 6.04 -2.91 -0.02 3.92 16 37 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.12 5.37 5.63 -2.91 -0.02 5.35 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.82 7.98 -2.38 -0.02 0.81 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.95 7.20 -2.39 -0.02 0.93 16 45 H 0.05 0.99 7.22 -2.39 -0.02 0.98 16 46 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -72.46 370.15 4.53 -67.93 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.35 Total: 30.30 kcal Atomic # 6 Polarization: -49.09 SS G_CDS: 5.21 Total: -43.89 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.42 Total: -77.30 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -1.64 Total: -23.39 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.46 4.53 -67.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085380093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.699 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds