Wall clock time and date at job start Tue Mar 31 2020 10:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47110 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99962 * 0.02562 * 13 11 10 15 15 C 1.46496 * 119.99745 * 180.02562 * 13 11 10 16 16 C 1.50699 * 109.47513 * 90.00157 * 15 13 11 17 17 H 1.08002 * 119.99958 * 359.97438 * 16 15 13 18 18 C 1.37879 * 120.00286 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99923 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46933 * 89.99596 * 20 18 16 22 22 H 1.48500 * 109.46729 * 209.99726 * 20 18 16 23 23 H 1.48500 * 109.47192 * 329.99986 * 20 18 16 24 24 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 25 25 C 1.38143 * 120.05579 * 359.44512 * 24 6 5 26 26 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 28 28 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 29 29 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 32 32 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 33 33 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 34 34 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 35 35 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 36 36 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 37 37 H 1.09000 * 109.47214 * 300.00611 * 10 9 8 38 38 H 1.09000 * 109.46955 * 60.00396 * 10 9 8 39 39 H 1.09003 * 109.47205 * 89.99932 * 14 13 11 40 40 H 1.09000 * 109.47085 * 209.99906 * 14 13 11 41 41 H 1.08999 * 109.47554 * 329.99880 * 14 13 11 42 42 H 1.09004 * 109.47001 * 210.00321 * 15 13 11 43 43 H 1.09005 * 109.47616 * 330.00190 * 15 13 11 44 44 H 0.97005 * 119.99644 * 180.02562 * 19 18 16 45 45 H 1.08001 * 119.97259 * 179.69844 * 24 6 5 46 46 H 1.07992 * 120.02912 * 180.24892 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9107 6.8382 -1.4382 10 6 5.1422 7.2939 -2.8803 11 6 5.8263 8.6367 -2.8791 12 8 6.1021 9.1758 -1.8283 13 7 6.1326 9.2379 -4.0459 14 6 5.7999 8.5864 -5.3151 15 6 6.7982 10.5430 -4.0447 16 6 8.2921 10.3450 -4.0447 17 1 8.7046 9.3469 -4.0451 18 6 9.1324 11.4382 -4.0432 19 7 8.6302 12.6536 -4.0422 20 14 10.9843 11.1927 -4.0425 21 1 11.4756 11.1290 -5.4424 22 1 11.6338 12.3290 -3.3410 23 1 11.3153 9.9250 -3.3436 24 6 1.9209 3.6048 0.0081 25 6 1.2914 2.3752 0.0014 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 4.0208 0.3801 -0.0005 30 1 5.1344 2.5752 -0.0008 31 1 3.3580 5.7459 0.5176 32 1 4.9441 4.9378 0.5160 33 1 4.8445 4.7475 -1.9543 34 1 3.2585 5.5555 -1.9527 35 1 4.2826 7.5651 -0.9233 36 1 5.8689 6.7577 -0.9248 37 1 5.7704 6.5668 -3.3947 38 1 4.1842 7.3743 -3.3940 39 1 4.8019 8.8917 -5.6296 40 1 6.5254 8.8784 -6.0744 41 1 5.8249 7.5044 -5.1857 42 1 6.5056 11.1008 -4.9343 43 1 6.5055 11.0994 -3.1543 44 1 9.2214 13.4227 -4.0415 45 1 1.3340 4.5114 0.0143 46 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098101245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:19 Heat of formation + Delta-G solvation = -70.828761 kcal Electronic energy + Delta-G solvation = -23565.914675 eV Core-core repulsion = 20034.149730 eV Total energy + Delta-G solvation = -3531.764945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42767 -38.98365 -38.11859 -35.36826 -34.64264 -32.63851 -31.88658 -31.31811 -29.05070 -27.90720 -27.20526 -25.74490 -24.48449 -22.93638 -22.59767 -21.22894 -20.80058 -18.46976 -18.23822 -16.63447 -16.50874 -16.12087 -16.05760 -15.70415 -15.54712 -15.17386 -14.64708 -14.45038 -14.18835 -13.94956 -13.68764 -13.42639 -12.89600 -12.75022 -12.62382 -12.30487 -12.19710 -12.12224 -11.97110 -11.80492 -11.38854 -11.26115 -11.17736 -11.00878 -10.92613 -10.88537 -10.79465 -10.51351 -10.43437 -10.13169 -9.59722 -9.26225 -8.81837 -8.41584 -8.31492 -7.58786 -6.02102 -4.06736 1.08070 1.16307 2.94050 3.31192 3.37636 3.41708 3.48574 3.52809 4.04014 4.46352 4.47353 4.58011 4.65029 4.71413 4.74471 4.95928 5.03588 5.06305 5.12742 5.15836 5.20298 5.31738 5.35219 5.45842 5.55468 5.64655 5.66702 5.73874 5.84748 5.86178 5.97360 5.97964 6.02364 6.09003 6.11764 6.24623 6.35107 6.49373 6.50541 6.55000 7.07901 7.10306 7.47931 7.59199 7.94709 8.26593 8.48583 8.93473 9.16818 9.58350 11.05909 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.001948 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.158063 B =14373.654189 C =14632.995843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.150 4.150 5 C -0.078 4.078 6 C -0.112 4.112 7 C -0.079 4.079 8 C -0.112 4.112 9 C -0.104 4.104 10 C -0.139 4.139 11 C 0.501 3.499 12 O -0.544 6.544 13 N -0.606 5.606 14 C 0.085 3.915 15 C 0.244 3.756 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.078 4.078 25 C -0.206 4.206 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.263 0.737 45 H 0.125 0.875 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.846 -23.450 5.189 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.071 3.929 4 C -0.168 4.168 5 C -0.096 4.096 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.150 4.150 9 C -0.142 4.142 10 C -0.179 4.179 11 C 0.288 3.712 12 O -0.422 6.422 13 N -0.338 5.338 14 C -0.060 4.060 15 C 0.125 3.875 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.096 4.096 25 C -0.225 4.225 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.143 0.857 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.564 -23.136 5.729 29.025 hybrid contribution 0.749 0.044 -0.242 0.788 sum -15.814 -23.093 5.487 28.521 Atomic orbital electron populations 1.23038 0.78478 1.03856 1.01361 1.86061 1.21326 1.27120 1.88920 1.19039 0.92416 0.84081 0.97332 1.20430 0.91337 0.98701 1.06344 1.20922 1.00012 0.90960 0.97715 1.19918 0.93524 0.95575 1.02156 1.20592 1.00549 0.92675 0.97796 1.21603 1.00746 0.96971 0.95635 1.21339 1.01626 0.95613 0.95579 1.21693 1.01236 0.95917 0.99045 1.20442 0.79711 0.86948 0.84096 1.90655 1.54489 1.66115 1.30976 1.48183 1.58374 1.22615 1.04640 1.21616 0.99978 0.96879 0.87498 1.19271 0.91733 0.78214 0.98316 1.21447 0.91201 0.92870 1.50887 0.92510 1.24949 0.99109 0.95022 0.95135 1.69938 1.35230 0.97711 1.50550 0.86493 0.85079 0.77865 0.77957 1.20664 1.21079 1.19905 1.20874 0.94105 0.97000 0.97655 1.21215 0.99904 0.92405 1.08947 0.88315 0.92697 0.92655 0.85329 0.85217 0.90921 0.90798 0.91908 0.92034 0.91304 0.91154 0.89690 0.89899 0.93886 0.90923 0.92425 0.95136 0.93887 0.92754 0.85728 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.95 10.50 -19.44 -0.20 -3.15 16 3 C 0.12 1.13 6.69 -39.21 -0.26 0.87 16 4 C -0.15 -1.42 9.99 -39.43 -0.39 -1.82 16 5 C -0.08 -0.72 9.69 -39.61 -0.38 -1.11 16 6 C -0.11 -1.06 5.14 -104.60 -0.54 -1.60 16 7 C -0.08 -0.75 5.34 -27.88 -0.15 -0.89 16 8 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 9 C -0.10 -1.39 4.50 -26.73 -0.12 -1.51 16 10 C -0.14 -2.01 4.25 -27.89 -0.12 -2.13 16 11 C 0.50 10.53 7.67 -10.98 -0.08 10.45 16 12 O -0.54 -13.89 15.56 5.56 0.09 -13.80 16 13 N -0.61 -13.13 2.86 -182.96 -0.52 -13.65 16 14 C 0.08 1.36 10.24 59.84 0.61 1.97 16 15 C 0.24 6.54 5.16 -5.20 -0.03 6.51 16 16 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 20 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.08 -0.71 9.69 -39.61 -0.38 -1.09 16 25 C -0.21 -1.81 9.04 -39.43 -0.36 -2.16 16 26 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 28 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 37 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 38 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.13 0.84 6.30 -52.49 -0.33 0.50 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -34.79 382.69 -8.60 -43.40 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.68 Total: -2.91 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.77 Total: -6.53 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.21 Total: -39.88 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.12 Total: -16.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.79 -8.60 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098101245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.434 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds