Wall clock time and date at job start Tue Mar 31 2020 10:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47210 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47110 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99962 * 0.02562 * 13 11 10 15 15 C 1.46496 * 119.99745 * 180.02562 * 13 11 10 16 16 C 1.50699 * 109.47513 * 90.00157 * 15 13 11 17 17 H 1.08002 * 119.99958 * 359.97438 * 16 15 13 18 18 C 1.37879 * 120.00286 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99923 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46933 * 89.99596 * 20 18 16 22 22 H 1.48500 * 109.46729 * 209.99726 * 20 18 16 23 23 H 1.48500 * 109.47192 * 329.99986 * 20 18 16 24 24 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 25 25 C 1.38143 * 120.05579 * 359.44512 * 24 6 5 26 26 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 28 28 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 29 29 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 32 32 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 33 33 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 34 34 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 35 35 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 36 36 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 37 37 H 1.09000 * 109.47214 * 300.00611 * 10 9 8 38 38 H 1.09000 * 109.46955 * 60.00396 * 10 9 8 39 39 H 1.09003 * 109.47205 * 89.99932 * 14 13 11 40 40 H 1.09000 * 109.47085 * 209.99906 * 14 13 11 41 41 H 1.08999 * 109.47554 * 329.99880 * 14 13 11 42 42 H 1.09004 * 109.47001 * 210.00321 * 15 13 11 43 43 H 1.09005 * 109.47616 * 330.00190 * 15 13 11 44 44 H 0.97005 * 119.99644 * 180.02562 * 19 18 16 45 45 H 1.08001 * 119.97259 * 179.69844 * 24 6 5 46 46 H 1.07992 * 120.02912 * 180.24892 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9107 6.8382 -1.4382 10 6 5.1422 7.2939 -2.8803 11 6 5.8263 8.6367 -2.8791 12 8 6.1021 9.1758 -1.8283 13 7 6.1326 9.2379 -4.0459 14 6 5.7999 8.5864 -5.3151 15 6 6.7982 10.5430 -4.0447 16 6 8.2921 10.3450 -4.0447 17 1 8.7046 9.3469 -4.0451 18 6 9.1324 11.4382 -4.0432 19 7 8.6302 12.6536 -4.0422 20 14 10.9843 11.1927 -4.0425 21 1 11.4756 11.1290 -5.4424 22 1 11.6338 12.3290 -3.3410 23 1 11.3153 9.9250 -3.3436 24 6 1.9209 3.6048 0.0081 25 6 1.2914 2.3752 0.0014 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 4.0208 0.3801 -0.0005 30 1 5.1344 2.5752 -0.0008 31 1 3.3580 5.7459 0.5176 32 1 4.9441 4.9378 0.5160 33 1 4.8445 4.7475 -1.9543 34 1 3.2585 5.5555 -1.9527 35 1 4.2826 7.5651 -0.9233 36 1 5.8689 6.7577 -0.9248 37 1 5.7704 6.5668 -3.3947 38 1 4.1842 7.3743 -3.3940 39 1 4.8019 8.8917 -5.6296 40 1 6.5254 8.8784 -6.0744 41 1 5.8249 7.5044 -5.1857 42 1 6.5056 11.1008 -4.9343 43 1 6.5055 11.0994 -3.1543 44 1 9.2214 13.4227 -4.0415 45 1 1.3340 4.5114 0.0143 46 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098101245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:18 Heat of formation + Delta-G solvation = -91.218613 kcal Electronic energy + Delta-G solvation = -23566.798845 eV Core-core repulsion = 20034.149730 eV Total energy + Delta-G solvation = -3532.649116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.05768 -40.61465 -38.78616 -36.70231 -36.06495 -34.72412 -32.87340 -31.97442 -30.31148 -29.17941 -28.02987 -27.23582 -25.79201 -24.23775 -23.53483 -22.24345 -21.59473 -19.85167 -19.05549 -18.70148 -17.67243 -17.28175 -17.07158 -16.77676 -16.61626 -16.34159 -16.07187 -15.65233 -15.20531 -14.72220 -14.58662 -14.44053 -14.23883 -13.88153 -13.80666 -13.53591 -13.41209 -13.32200 -13.07972 -13.04942 -12.80884 -12.74270 -12.54679 -12.21346 -12.11370 -12.11089 -11.81338 -11.70816 -11.67478 -11.63241 -11.35324 -10.64897 -10.53329 -9.92142 -9.39042 -8.98972 -8.22880 -6.38203 0.42348 0.47960 1.35615 1.38925 1.49344 1.90119 2.33870 2.41737 2.50711 2.81896 3.06052 3.73736 3.87442 3.93728 3.99002 4.10872 4.14475 4.28574 4.39793 4.40794 4.45457 4.49683 4.57923 4.62890 4.71318 4.73206 4.75421 4.80307 4.83597 4.94607 4.97606 4.99927 5.07782 5.14792 5.22886 5.25668 5.36643 5.40125 5.44425 5.53966 5.57503 5.78510 5.86064 5.87849 6.06201 6.48095 6.69803 6.83553 7.28275 7.53652 8.84004 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.001948 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.158063 B =14373.654189 C =14632.995843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.104 3.896 4 C -0.164 4.164 5 C -0.084 4.084 6 C -0.121 4.121 7 C -0.076 4.076 8 C -0.099 4.099 9 C -0.099 4.099 10 C -0.123 4.123 11 C 0.488 3.512 12 O -0.603 6.603 13 N -0.615 5.615 14 C 0.079 3.921 15 C 0.257 3.743 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.970 3.030 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.273 1.273 24 C -0.084 4.084 25 C -0.209 4.209 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.022 0.978 43 H -0.004 1.004 44 H 0.267 0.733 45 H 0.139 0.861 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.433 -25.664 4.182 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.059 3.941 4 C -0.183 4.183 5 C -0.102 4.102 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.136 4.136 9 C -0.138 4.138 10 C -0.163 4.163 11 C 0.278 3.722 12 O -0.485 6.485 13 N -0.346 5.346 14 C -0.063 4.063 15 C 0.135 3.865 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.794 3.206 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.102 4.102 25 C -0.228 4.228 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.040 0.960 43 H 0.014 0.986 44 H 0.076 0.924 45 H 0.156 0.844 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.182 -25.389 4.680 31.011 hybrid contribution 0.843 0.723 0.084 1.113 sum -16.339 -24.666 4.763 29.968 Atomic orbital electron populations 1.23306 0.76643 1.05434 1.02141 1.86036 1.23332 1.27084 1.88886 1.19257 0.92750 0.84674 0.97424 1.20630 0.91756 0.99137 1.06737 1.21089 1.00666 0.90890 0.97564 1.19956 0.93897 0.95397 1.02848 1.20536 1.00509 0.92850 0.97438 1.21486 1.01030 0.94812 0.96317 1.21291 1.00647 0.97207 0.94606 1.21720 1.02353 0.91809 1.00405 1.21689 0.78950 0.88739 0.82839 1.90621 1.56834 1.68013 1.33025 1.48253 1.57887 1.21205 1.07277 1.21928 1.01041 0.98797 0.84565 1.18741 0.91511 0.80741 0.95499 1.21718 0.92440 0.92841 1.51216 0.92891 1.25907 1.04409 0.94643 0.94432 1.70059 1.37167 0.98588 1.51032 0.85382 0.78675 0.77710 0.78835 1.18693 1.20577 1.19773 1.21102 0.94121 0.97716 0.97288 1.21446 1.00954 0.91988 1.08389 0.86485 0.91874 0.91839 0.84751 0.84216 0.90852 0.91110 0.91034 0.90700 0.92813 0.93333 0.87079 0.86523 0.91172 0.91848 0.88509 0.96021 0.98634 0.92400 0.84352 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.84 10.50 -92.47 -0.97 -6.81 16 3 C 0.10 1.90 6.69 22.51 0.15 2.05 16 4 C -0.16 -2.98 9.99 22.37 0.22 -2.75 16 5 C -0.08 -1.46 9.69 22.25 0.22 -1.24 16 6 C -0.12 -2.11 5.14 -19.85 -0.10 -2.21 16 7 C -0.08 -1.33 5.34 29.85 0.16 -1.17 16 8 C -0.10 -1.77 5.20 30.59 0.16 -1.61 16 9 C -0.10 -2.54 4.50 30.59 0.14 -2.40 16 10 C -0.12 -3.27 4.25 29.85 0.13 -3.14 16 11 C 0.49 20.50 7.67 87.65 0.67 21.17 16 12 O -0.60 -32.02 15.56 -3.03 -0.05 -32.07 16 13 N -0.61 -26.60 2.86 -851.14 -2.43 -29.03 16 14 C 0.08 2.34 10.24 127.77 1.31 3.64 16 15 C 0.26 14.27 5.16 85.63 0.44 14.71 16 16 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 17 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 18 C 0.00 0.29 5.46 84.66 0.46 0.75 16 19 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 20 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.08 -1.36 9.69 22.25 0.22 -1.15 16 25 C -0.21 -3.30 9.04 22.37 0.20 -3.09 16 26 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.44 7.66 -2.39 -0.02 0.43 16 28 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 29 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 32 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 36 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 37 H 0.11 2.43 7.40 -2.39 -0.02 2.41 16 38 H 0.12 2.37 8.11 -2.39 -0.02 2.35 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 41 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 42 H 0.02 1.22 8.07 -2.38 -0.02 1.20 16 43 H 0.00 -0.29 7.42 -2.38 -0.02 -0.30 16 44 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 45 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 46 H 0.14 1.59 6.30 -2.91 -0.02 1.58 16 Total: -1.00 -79.01 382.69 5.53 -73.49 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.94 Total: 10.71 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.73 Total: -7.02 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.15 Total: -85.91 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.02 Total: -38.88 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -79.01 5.53 -73.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098101245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.731 kcal (2) G-P(sol) polarization free energy of solvation -79.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds