Wall clock time and date at job start Tue Mar 31 2020 10:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46679 * 2 1 4 4 C 1.34233 * 116.99850 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99974 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99866 * 179.97438 * 4 3 2 7 7 N 1.46905 * 109.47230 * 180.02562 * 6 4 3 8 8 C 1.46887 * 110.99994 * 170.00101 * 7 6 4 9 9 C 1.53005 * 109.47098 * 196.73701 * 8 7 6 10 10 C 1.52999 * 109.47211 * 174.86224 * 9 8 7 11 11 C 1.50698 * 109.46863 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99756 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00357 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99835 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46927 * 60.00385 * 15 13 11 17 17 H 1.48507 * 109.46840 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47587 * 300.00397 * 15 13 11 19 19 C 1.46904 * 110.99722 * 293.95931 * 7 6 4 20 20 C 1.50705 * 109.46871 * 301.64073 * 19 7 6 21 21 C 1.38235 * 120.00262 * 90.68716 * 20 19 7 22 22 C 1.38231 * 120.00179 * 179.97438 * 21 20 19 23 23 C 1.38235 * 119.99805 * 359.95863 * 22 21 20 24 24 C 1.38230 * 120.00199 * 0.27513 * 23 22 21 25 25 C 1.38235 * 119.99806 * 270.66973 * 20 19 7 26 26 H 1.09003 * 109.47243 * 299.99760 * 1 2 3 27 27 H 1.08993 * 109.47327 * 60.00571 * 1 2 3 28 28 H 1.09012 * 109.46777 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47243 * 240.00240 * 2 1 3 30 30 H 1.08993 * 109.47214 * 119.99974 * 2 1 3 31 31 H 1.09002 * 109.47073 * 59.99888 * 6 4 3 32 32 H 1.08999 * 109.47441 * 299.99994 * 6 4 3 33 33 H 1.08998 * 109.47632 * 316.73741 * 8 7 6 34 34 H 1.09001 * 109.47626 * 76.74204 * 8 7 6 35 35 H 1.09003 * 109.47152 * 294.86651 * 9 8 7 36 36 H 1.09005 * 109.46981 * 54.86322 * 9 8 7 37 37 H 1.08995 * 109.47224 * 300.00505 * 10 9 8 38 38 H 1.09007 * 109.46797 * 60.00874 * 10 9 8 39 39 H 0.96995 * 120.00362 * 179.97438 * 14 13 11 40 40 H 1.08999 * 109.46644 * 181.64578 * 19 7 6 41 41 H 1.08991 * 109.47514 * 61.64129 * 19 7 6 42 42 H 1.08001 * 119.99898 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.00002 * 179.97438 * 22 21 20 44 44 H 1.08004 * 119.99722 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.00183 * 179.72426 * 24 23 22 46 46 H 1.08000 * 120.00109 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9205 2.9376 -0.0012 7 7 5.3876 2.8608 -0.0023 8 6 5.9836 4.1819 -0.2410 9 6 7.4490 4.0143 -0.6480 10 6 8.0341 5.3781 -1.0203 11 6 9.4776 5.2130 -1.4205 12 1 9.9321 4.2334 -1.4107 13 6 10.2181 6.3127 -1.7991 14 7 9.6649 7.5058 -1.8106 15 14 12.0076 6.1082 -2.2945 16 1 12.0965 5.1962 -3.4631 17 1 12.5758 7.4321 -2.6548 18 1 12.7731 5.5339 -1.1591 19 6 5.8851 2.2773 1.2507 20 6 5.4130 3.1098 2.4148 21 6 4.2154 2.8114 3.0374 22 6 3.7826 3.5747 4.1054 23 6 4.5478 4.6360 4.5515 24 6 5.7430 4.9374 3.9260 25 6 6.1777 4.1717 2.8603 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.5849 3.4699 0.8888 32 1 3.5843 3.4695 -0.8911 33 1 5.4403 4.6868 -1.0397 34 1 5.9256 4.7769 0.6704 35 1 8.0115 3.5927 0.1851 36 1 7.5136 3.3448 -1.5057 37 1 7.4716 5.7996 -1.8533 38 1 7.9697 6.0475 -0.1624 39 1 10.1859 8.2795 -2.0766 40 1 6.9749 2.2591 1.2354 41 1 5.5061 1.2606 1.3538 42 1 3.6178 1.9818 2.6892 43 1 2.8467 3.3418 4.5915 44 1 4.2098 5.2321 5.3863 45 1 6.3387 5.7693 4.2717 46 1 7.1137 4.4045 2.3744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102398232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:40 Heat of formation + Delta-G solvation = -66.225207 kcal Electronic energy + Delta-G solvation = -25184.409291 eV Core-core repulsion = 21652.843971 eV Total energy + Delta-G solvation = -3531.565320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75686 -39.55357 -37.40015 -36.29969 -33.74817 -32.10414 -31.77040 -31.19779 -30.76864 -28.26466 -26.81424 -24.76271 -23.36833 -22.56351 -22.15843 -21.50094 -20.43757 -19.68158 -17.73936 -16.98332 -16.76432 -16.25196 -16.12014 -15.69067 -15.43309 -15.11677 -14.60784 -14.35474 -14.22417 -13.80778 -13.55304 -13.26117 -13.14475 -12.92688 -12.51501 -12.48006 -12.19197 -11.94496 -11.78225 -11.74800 -11.51943 -11.33687 -11.21989 -10.93053 -10.79645 -10.67336 -10.61545 -10.53889 -10.23218 -9.61597 -9.33251 -9.06544 -8.88242 -8.75628 -8.31746 -8.18637 -5.97442 -3.99251 1.31373 1.39550 2.20221 2.46988 3.35765 3.39747 3.42875 3.74394 4.17279 4.49419 4.60680 4.65995 4.75174 4.81394 4.85916 4.98749 5.00668 5.11272 5.19294 5.28994 5.36224 5.38551 5.42860 5.48748 5.50534 5.61752 5.67693 5.76854 5.90219 5.98399 6.06842 6.12393 6.30092 6.37551 6.43043 6.52557 6.58329 6.66658 6.78128 7.00690 7.06415 7.21442 7.29320 7.70924 7.78467 7.85457 8.03103 8.46488 9.07802 9.64702 11.13910 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.003467 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.223835 B = 8073.352512 C = 9531.886902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.463 3.537 5 O -0.489 6.489 6 C 0.053 3.947 7 N -0.510 5.510 8 C 0.048 3.952 9 C -0.102 4.102 10 C 0.024 3.976 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.080 3.920 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.100 4.100 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 -10.618 10.032 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.281 6.281 4 C 0.305 3.695 5 O -0.375 6.375 6 C -0.076 4.076 7 N -0.233 5.233 8 C -0.078 4.078 9 C -0.140 4.140 10 C -0.014 4.014 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.047 4.047 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.118 4.118 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.139 -11.078 9.564 23.307 hybrid contribution 0.722 0.415 0.383 0.916 sum -17.417 -10.663 9.948 22.716 Atomic orbital electron populations 1.21804 0.92734 1.02861 1.03520 1.22983 0.95226 0.80413 1.02569 1.86503 1.24884 1.32248 1.84469 1.23726 0.80253 0.92931 0.72634 1.90634 1.59977 1.42877 1.43975 1.21742 0.90656 0.90334 1.04880 1.62239 1.02495 1.25731 1.32811 1.22511 0.97961 0.86942 1.00414 1.21630 0.90965 1.01071 1.00312 1.19054 0.95289 0.90525 0.96493 1.21215 0.96265 0.93557 1.44622 0.92709 1.25013 0.98318 0.95339 0.95753 1.69952 1.36596 0.98535 1.48552 0.86677 0.85236 0.77125 0.79078 1.20224 1.21353 1.20282 1.21517 1.01831 0.97735 0.83661 1.20775 0.95372 0.97832 0.98259 1.21008 0.96266 0.99652 0.96494 1.21076 0.99804 0.96162 0.97212 1.21138 0.95206 0.97658 1.00041 1.21239 0.96523 0.99669 0.96172 1.21335 1.00098 0.94454 0.95931 0.91542 0.91431 0.90342 0.91205 0.91401 0.90137 0.86716 0.91020 0.93734 0.93473 0.92361 0.96634 0.96812 0.93011 0.88848 0.88718 0.87127 0.86400 0.86321 0.85889 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.18 10.22 -39.27 -0.40 -4.58 16 4 C 0.46 6.15 6.99 36.01 0.25 6.40 16 5 O -0.49 -7.70 14.06 -18.75 -0.26 -7.97 16 6 C 0.05 0.68 5.09 -4.97 -0.03 0.66 16 7 N -0.51 -7.81 4.40 -237.52 -1.04 -8.86 16 8 C 0.05 0.81 4.79 -3.83 -0.02 0.79 16 9 C -0.10 -2.08 5.12 -26.73 -0.14 -2.22 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.08 1.17 5.07 -4.97 -0.03 1.14 16 20 C -0.12 -1.63 4.08 -104.62 -0.43 -2.06 16 21 C -0.12 -1.41 7.78 -39.59 -0.31 -1.71 16 22 C -0.12 -1.37 10.05 -39.59 -0.40 -1.76 16 23 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 24 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 25 C -0.10 -1.39 7.82 -39.58 -0.31 -1.70 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.08 0.99 5.66 -51.93 -0.29 0.70 16 32 H 0.11 1.33 7.85 -51.93 -0.41 0.93 16 33 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 34 H 0.04 0.75 5.24 -51.93 -0.27 0.47 16 35 H 0.05 0.95 6.90 -51.93 -0.36 0.59 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.09 1.44 6.60 -51.93 -0.34 1.10 16 41 H 0.09 1.42 5.86 -51.93 -0.30 1.12 16 42 H 0.11 1.28 7.33 -52.49 -0.38 0.90 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.13 1.96 7.77 -52.49 -0.41 1.55 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -31.73 372.07 -9.88 -41.62 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.37 Total: 0.43 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.13 Total: -16.85 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.31 Total: -35.04 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.66 Total: -12.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.73 -9.88 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102398232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.609 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds