Wall clock time and date at job start Tue Mar 31 2020 08:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47160 * 2 1 4 4 C 1.46504 * 119.99649 * 269.99866 * 3 2 1 5 5 C 1.50705 * 109.46932 * 269.99875 * 4 3 2 6 6 H 1.08001 * 120.00058 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99745 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99952 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46738 * 90.00109 * 9 7 5 11 11 H 1.48500 * 109.47291 * 210.00006 * 9 7 5 12 12 H 1.48499 * 109.47259 * 330.00493 * 9 7 5 13 13 C 1.34775 * 120.00512 * 89.99782 * 3 2 1 14 14 O 1.21279 * 120.00172 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99421 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.46884 * 180.02562 * 15 13 3 17 17 C 1.53004 * 109.47097 * 179.97438 * 16 15 13 18 18 O 1.42903 * 109.47155 * 179.97438 * 17 16 15 19 19 C 1.35900 * 117.00220 * 179.97438 * 18 17 16 20 20 C 1.38749 * 120.05349 * 0.02562 * 19 18 17 21 21 C 1.38119 * 119.94390 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.05600 * 359.74265 * 21 20 19 23 23 C 1.38242 * 120.10971 * 0.51459 * 22 21 20 24 24 C 1.50706 * 119.97255 * 179.76825 * 23 22 21 25 25 C 1.38164 * 120.05477 * 359.48677 * 23 22 21 26 26 H 1.09001 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46998 * 300.00222 * 1 2 3 28 28 H 1.09005 * 109.47196 * 60.00279 * 1 2 3 29 29 H 1.09000 * 109.46998 * 239.99778 * 2 1 3 30 30 H 1.09005 * 109.47196 * 119.99721 * 2 1 3 31 31 H 1.08997 * 109.47202 * 29.99921 * 4 3 2 32 32 H 1.09002 * 109.47088 * 150.00508 * 4 3 2 33 33 H 0.96997 * 120.00125 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47690 * 60.00232 * 15 13 3 35 35 H 1.08997 * 109.47268 * 299.99575 * 15 13 3 36 36 H 1.09000 * 109.47327 * 59.99662 * 16 15 13 37 37 H 1.09008 * 109.47117 * 299.99503 * 16 15 13 38 38 H 1.09000 * 109.47253 * 59.99684 * 17 16 15 39 39 H 1.08997 * 109.47217 * 299.99599 * 17 16 15 40 40 H 1.08004 * 120.02880 * 359.95538 * 20 19 18 41 41 H 1.08003 * 119.97250 * 180.02562 * 21 20 19 42 42 H 1.07999 * 119.94810 * 180.27303 * 22 21 20 43 43 H 1.09001 * 109.46953 * 269.71760 * 24 23 22 44 44 H 1.09000 * 109.47318 * 29.71358 * 24 23 22 45 45 H 1.09000 * 109.47161 * 149.71989 * 24 23 22 46 46 H 1.08002 * 120.02382 * 180.23677 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 3.3497 3.1271 -3.6172 9 14 5.9139 2.0973 -3.4164 10 1 5.9777 0.8766 -4.2596 11 1 6.3929 3.2650 -4.1989 12 1 6.7737 1.9174 -2.2191 13 6 2.2429 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3060 2.4722 16 6 2.3229 2.2437 3.6351 17 6 2.0678 1.5225 4.9602 18 8 2.3772 2.3981 6.0463 19 6 2.2035 1.9087 7.3022 20 6 1.7451 0.6120 7.4853 21 6 1.5699 0.1167 8.7627 22 6 1.8559 0.9101 9.8585 23 6 2.3077 2.2042 9.6787 24 6 2.6135 3.0680 10.8752 25 6 2.4846 2.7044 8.4030 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1385 33 1 3.6760 3.5182 -4.4427 34 1 2.6228 0.4188 2.5299 35 1 0.9444 1.0115 2.5302 36 1 1.6921 3.1308 3.5773 37 1 3.3708 2.5386 3.5774 38 1 2.6983 0.6353 5.0182 39 1 1.0200 1.2280 5.0177 40 1 1.5252 -0.0095 6.6298 41 1 1.2134 -0.8928 8.9058 42 1 1.7224 0.5196 10.8565 43 1 1.7185 3.6192 11.1637 44 1 2.9358 2.4387 11.7048 45 1 3.4073 3.7709 10.6225 46 1 2.8413 3.7142 8.2631 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208092.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:54 Heat of formation + Delta-G solvation = -69.121695 kcal Electronic energy + Delta-G solvation = -23999.723295 eV Core-core repulsion = 20468.032374 eV Total energy + Delta-G solvation = -3531.690921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34322 -39.15139 -37.90060 -35.35876 -33.78921 -32.77582 -32.68843 -30.39550 -30.07684 -28.03712 -27.24970 -26.22305 -23.26230 -22.98298 -22.75664 -21.65952 -20.83832 -18.41073 -17.78686 -16.70720 -16.47296 -16.33630 -16.17766 -15.83700 -15.41349 -14.89950 -14.53356 -14.23712 -14.01757 -13.69313 -13.47274 -13.41367 -13.34498 -12.85994 -12.47803 -12.39506 -12.22347 -11.98255 -11.95878 -11.72506 -11.69789 -11.42541 -11.27642 -11.13816 -10.92016 -10.87748 -10.75945 -10.56858 -10.48466 -10.12435 -9.63049 -9.03330 -8.90485 -8.43214 -8.37340 -7.66103 -6.03926 -4.08567 1.07424 1.23783 2.98324 3.29975 3.36616 3.39536 3.45270 3.52154 3.97289 4.44927 4.54428 4.55876 4.81575 4.83595 4.85448 4.97135 5.02811 5.09292 5.21926 5.27717 5.29165 5.30154 5.33136 5.35152 5.41191 5.47821 5.62009 5.63780 5.67240 5.80047 5.83364 6.02859 6.09945 6.15475 6.19685 6.22223 6.33029 6.35575 6.47375 6.57827 7.07399 7.29049 7.45552 7.55659 7.92645 8.24224 8.43232 8.90791 9.10442 9.56504 11.04144 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.002303 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.882579 B =12155.093589 C =12817.851439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.540 6.540 15 C -0.137 4.137 16 C -0.103 4.103 17 C 0.061 3.939 18 O -0.312 6.312 19 C 0.139 3.861 20 C -0.217 4.217 21 C -0.077 4.077 22 C -0.165 4.165 23 C -0.049 4.049 24 C -0.115 4.115 25 C -0.157 4.157 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 -8.177 24.390 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.418 6.418 15 C -0.177 4.177 16 C -0.141 4.141 17 C -0.014 4.014 18 O -0.225 6.225 19 C 0.093 3.907 20 C -0.235 4.235 21 C -0.095 4.095 22 C -0.183 4.183 23 C -0.050 4.050 24 C -0.171 4.171 25 C -0.175 4.175 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.003 -7.264 24.108 25.885 hybrid contribution 0.815 -0.578 -0.582 1.156 sum -5.188 -7.841 23.527 25.336 Atomic orbital electron populations 1.22226 0.96857 1.01360 1.02331 1.21409 0.93452 0.84276 1.02647 1.48263 1.63727 1.13226 1.07796 1.19266 0.96233 0.93663 0.78186 1.21434 0.96936 1.31846 1.06207 0.92512 1.24946 0.97871 0.94939 0.96449 1.69930 1.35708 1.33387 1.14359 0.86498 0.84692 0.77656 0.78576 1.20665 1.21081 1.19908 1.20192 0.78618 0.86960 0.85084 1.90682 1.45713 1.18163 1.87243 1.21589 1.03173 0.99601 0.93358 1.21242 1.04690 0.98840 0.89338 1.22911 1.00169 0.92966 0.85324 1.86101 1.82288 1.42092 1.12010 1.19047 0.94552 0.92229 0.84842 1.21287 1.07817 0.95727 0.98701 1.20921 0.97309 0.99399 0.91867 1.20913 1.04308 0.94248 0.98831 1.19706 0.96662 0.94538 0.94055 1.20813 1.02116 0.99039 0.95182 1.20330 1.06669 1.00669 0.89852 0.92215 0.93076 0.92046 0.90012 0.91729 0.95068 0.93911 0.92731 0.89290 0.89410 0.90051 0.89913 0.91953 0.91994 0.85409 0.85867 0.86108 0.90898 0.91353 0.91271 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.45 2.46 -175.05 -0.43 -12.88 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.29 7.67 -10.99 -0.08 10.21 16 14 O -0.54 -13.59 15.56 5.56 0.09 -13.51 16 15 C -0.14 -1.89 4.25 -27.88 -0.12 -2.01 16 16 C -0.10 -1.43 4.87 -26.73 -0.13 -1.56 16 17 C 0.06 0.68 4.74 37.16 0.18 0.86 16 18 O -0.31 -4.10 10.14 -19.43 -0.20 -4.30 16 19 C 0.14 1.65 6.69 -39.22 -0.26 1.39 16 20 C -0.22 -2.19 9.04 -39.44 -0.36 -2.55 16 21 C -0.08 -0.68 10.04 -39.61 -0.40 -1.07 16 22 C -0.16 -1.41 9.70 -39.56 -0.38 -1.80 16 23 C -0.05 -0.45 5.88 -104.64 -0.62 -1.07 16 24 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 25 C -0.16 -1.70 9.64 -39.44 -0.38 -2.08 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 30 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.09 1.06 7.40 -51.93 -0.38 0.67 16 35 H 0.09 0.99 7.19 -51.93 -0.37 0.62 16 36 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.08 1.29 8.10 -51.92 -0.42 0.87 16 38 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 39 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.13 1.10 6.30 -52.48 -0.33 0.76 16 41 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 45 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 46 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -34.08 381.53 -8.94 -43.02 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.58 Total: -1.58 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.28 Total: -7.48 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.31 Total: -38.88 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.11 Total: -17.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.08 -8.94 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208092.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.101 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds