Wall clock time and date at job start Tue Mar 31 2020 08:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47315 * 2 1 4 4 C 1.46496 * 120.00028 * 270.00512 * 3 2 1 5 5 C 1.50706 * 109.46980 * 269.99436 * 4 3 2 6 6 H 1.08004 * 119.99946 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00336 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00204 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99983 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47338 * 89.99860 * 9 7 5 11 11 H 1.48501 * 109.46760 * 210.00326 * 9 7 5 12 12 H 1.48501 * 109.46850 * 329.99658 * 9 7 5 13 13 C 1.34780 * 119.99789 * 89.99574 * 3 2 1 14 14 O 1.21278 * 119.99653 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00288 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.47413 * 179.97438 * 15 13 3 17 17 C 1.52995 * 109.47162 * 179.97438 * 16 15 13 18 18 O 1.42903 * 109.46972 * 180.02562 * 17 16 15 19 19 C 1.42893 * 113.99793 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.47070 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 89.99993 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97930 * 20 19 18 26 26 H 1.09000 * 109.47361 * 299.99959 * 1 2 3 27 27 H 1.08998 * 109.47160 * 60.00300 * 1 2 3 28 28 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46638 * 240.00079 * 2 1 3 30 30 H 1.09003 * 109.46808 * 120.00345 * 2 1 3 31 31 H 1.08998 * 109.47699 * 29.99234 * 4 3 2 32 32 H 1.09003 * 109.47639 * 149.99963 * 4 3 2 33 33 H 0.96999 * 120.00241 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47066 * 59.99574 * 15 13 3 35 35 H 1.08993 * 109.46997 * 299.99830 * 15 13 3 36 36 H 1.09001 * 109.46447 * 60.00042 * 16 15 13 37 37 H 1.09005 * 109.47034 * 300.00353 * 16 15 13 38 38 H 1.09005 * 109.47112 * 60.00208 * 17 16 15 39 39 H 1.08993 * 109.47202 * 300.00311 * 17 16 15 40 40 H 1.09005 * 109.47744 * 60.00256 * 19 18 17 41 41 H 1.09000 * 109.47353 * 299.99456 * 19 18 17 42 42 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8779 8 7 5.3910 2.1825 -3.2578 9 14 3.0128 3.4351 -3.9292 10 1 3.1162 4.8554 -3.5082 11 1 3.4057 3.3118 -5.3560 12 1 1.6131 2.9691 -3.7593 13 6 2.2429 2.0165 1.1673 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3241 2.2432 3.6353 17 6 2.0689 1.5219 4.9603 18 8 2.3783 2.3975 6.0464 19 6 2.1738 1.8180 7.3365 20 6 2.5298 2.8235 8.4011 21 6 1.5643 3.6838 8.8897 22 6 1.8907 4.6057 9.8666 23 6 3.1823 4.6671 10.3553 24 6 4.1490 3.8104 9.8628 25 6 3.8215 2.8853 8.8893 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1410 -1.1384 33 1 5.7171 2.5730 -4.0837 34 1 2.6227 0.4186 2.5299 35 1 0.9444 1.0115 2.5302 36 1 1.6938 3.1306 3.5778 37 1 3.3721 2.5373 3.5772 38 1 2.6988 0.6342 5.0179 39 1 1.0209 1.2281 5.0180 40 1 2.8065 0.9368 7.4435 41 1 1.1281 1.5296 7.4437 42 1 0.5550 3.6355 8.5082 43 1 1.1365 5.2781 10.2481 44 1 3.4371 5.3872 11.1188 45 1 5.1592 3.8613 10.2415 46 1 4.5756 2.2127 8.5080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:17 Heat of formation + Delta-G solvation = -67.152925 kcal Electronic energy + Delta-G solvation = -23841.353354 eV Core-core repulsion = 20309.747806 eV Total energy + Delta-G solvation = -3531.605549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.63662 -39.23281 -37.83332 -35.42863 -33.74288 -32.65776 -31.87903 -31.16471 -30.31621 -28.34504 -26.81865 -25.56223 -22.96950 -22.84918 -22.66261 -21.65593 -21.03439 -18.30604 -17.17774 -16.94933 -16.76043 -16.45515 -16.25335 -15.58459 -15.46023 -15.29340 -14.68808 -14.22492 -14.04773 -13.68830 -13.50140 -13.45523 -13.07637 -12.96571 -12.56662 -12.50475 -12.29102 -12.01689 -11.89528 -11.73124 -11.38367 -11.30620 -11.24816 -11.02990 -10.97102 -10.80613 -10.58290 -10.46588 -10.13729 -9.74537 -9.52142 -9.17816 -9.10825 -8.96827 -8.56980 -7.69492 -6.06797 -4.05275 0.99848 1.14428 3.26416 3.30700 3.36558 3.38372 3.39094 3.73244 4.01402 4.41368 4.53955 4.56878 4.74055 4.84381 4.94227 4.95041 5.03677 5.08338 5.19538 5.24352 5.26618 5.28999 5.37322 5.40508 5.41463 5.52665 5.57878 5.68739 5.70113 5.77096 5.79287 5.99937 6.15557 6.17366 6.23518 6.24954 6.33088 6.40451 6.42921 6.71349 6.73960 6.97657 7.07647 7.38427 7.63660 8.29134 8.49395 8.95305 9.02891 9.53755 11.06639 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.002248 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.632257 B =12454.269636 C =13106.041110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.216 3.784 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.539 6.539 15 C -0.136 4.136 16 C -0.103 4.103 17 C 0.063 3.937 18 O -0.379 6.379 19 C 0.102 3.898 20 C -0.089 4.089 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.098 4.098 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 -3.992 24.555 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.095 3.905 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.417 6.417 15 C -0.176 4.176 16 C -0.141 4.141 17 C -0.013 4.013 18 O -0.299 6.299 19 C 0.026 3.974 20 C -0.089 4.089 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.116 4.116 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.835 -3.159 24.347 26.448 hybrid contribution -0.508 0.168 -0.693 0.875 sum -10.343 -2.991 23.654 25.990 Atomic orbital electron populations 1.22237 0.96859 1.01511 1.02218 1.21432 0.93319 0.83925 1.03086 1.47948 1.64240 1.13369 1.07085 1.19635 0.97252 0.93399 0.80216 1.21335 0.95371 1.32811 1.07046 0.90806 1.24866 0.95017 0.95836 0.97391 1.69897 1.15140 1.45055 1.23573 0.86842 0.81442 0.81637 0.79710 1.19911 1.21101 1.19109 1.20288 0.78228 0.86949 0.85125 1.90678 1.45483 1.18256 1.87254 1.21588 1.03067 0.99763 0.93199 1.21214 1.04380 0.98577 0.89899 1.22570 0.99008 0.92890 0.86833 1.87999 1.88541 1.40332 1.12988 1.21286 0.99929 0.93900 0.82328 1.19645 0.94186 0.98109 0.96994 1.21085 0.99390 0.94787 0.96442 1.21155 0.96771 0.98827 0.97512 1.21204 0.93423 0.98929 0.99897 1.21167 0.99513 0.96036 0.97475 1.21104 0.95587 0.98550 0.96390 0.92955 0.92282 0.92029 0.89826 0.91342 0.95345 0.94644 0.92596 0.89239 0.89491 0.90466 0.90184 0.93230 0.93380 0.92468 0.92534 0.85925 0.85932 0.86050 0.85881 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.18 2.46 -175.06 -0.43 -12.61 16 4 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 5 C -0.53 -15.30 9.94 -34.44 -0.34 -15.65 16 6 H 0.07 2.35 8.06 -52.48 -0.42 1.92 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.51 10.31 7.67 -10.99 -0.08 10.22 16 14 O -0.54 -13.49 15.56 5.56 0.09 -13.40 16 15 C -0.14 -1.91 4.25 -27.88 -0.12 -2.03 16 16 C -0.10 -1.46 4.87 -26.73 -0.13 -1.60 16 17 C 0.06 0.71 5.94 37.16 0.22 0.93 16 18 O -0.38 -4.84 10.33 -35.23 -0.36 -5.21 16 19 C 0.10 0.98 6.06 36.01 0.22 1.20 16 20 C -0.09 -0.91 5.51 -104.62 -0.58 -1.49 16 21 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 22 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16 26 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 31 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 32 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 35 H 0.09 0.98 7.19 -51.93 -0.37 0.61 16 36 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 41 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -35.67 382.08 -9.07 -44.74 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.69 Total: -1.16 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.54 Total: -8.11 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.34 Total: -39.81 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.28 Total: -18.61 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.67 -9.07 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.410 kcal (2) G-P(sol) polarization free energy of solvation -35.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds