Wall clock time and date at job start Tue Mar 31 2020 08:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47315 * 2 1 4 4 C 1.46496 * 120.00028 * 270.00512 * 3 2 1 5 5 C 1.50706 * 109.46980 * 269.99436 * 4 3 2 6 6 H 1.08004 * 119.99946 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00336 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00204 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99983 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47338 * 89.99860 * 9 7 5 11 11 H 1.48501 * 109.46760 * 210.00326 * 9 7 5 12 12 H 1.48501 * 109.46850 * 329.99658 * 9 7 5 13 13 C 1.34780 * 119.99789 * 89.99574 * 3 2 1 14 14 O 1.21278 * 119.99653 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00288 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.47413 * 179.97438 * 15 13 3 17 17 C 1.52995 * 109.47162 * 179.97438 * 16 15 13 18 18 O 1.42903 * 109.46972 * 180.02562 * 17 16 15 19 19 C 1.42893 * 113.99793 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.47070 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 89.99993 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97930 * 20 19 18 26 26 H 1.09000 * 109.47361 * 299.99959 * 1 2 3 27 27 H 1.08998 * 109.47160 * 60.00300 * 1 2 3 28 28 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46638 * 240.00079 * 2 1 3 30 30 H 1.09003 * 109.46808 * 120.00345 * 2 1 3 31 31 H 1.08998 * 109.47699 * 29.99234 * 4 3 2 32 32 H 1.09003 * 109.47639 * 149.99963 * 4 3 2 33 33 H 0.96999 * 120.00241 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47066 * 59.99574 * 15 13 3 35 35 H 1.08993 * 109.46997 * 299.99830 * 15 13 3 36 36 H 1.09001 * 109.46447 * 60.00042 * 16 15 13 37 37 H 1.09005 * 109.47034 * 300.00353 * 16 15 13 38 38 H 1.09005 * 109.47112 * 60.00208 * 17 16 15 39 39 H 1.08993 * 109.47202 * 300.00311 * 17 16 15 40 40 H 1.09005 * 109.47744 * 60.00256 * 19 18 17 41 41 H 1.09000 * 109.47353 * 299.99456 * 19 18 17 42 42 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 46 46 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8779 8 7 5.3910 2.1825 -3.2578 9 14 3.0128 3.4351 -3.9292 10 1 3.1162 4.8554 -3.5082 11 1 3.4057 3.3118 -5.3560 12 1 1.6131 2.9691 -3.7593 13 6 2.2429 2.0165 1.1673 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3241 2.2432 3.6353 17 6 2.0689 1.5219 4.9603 18 8 2.3783 2.3975 6.0464 19 6 2.1738 1.8180 7.3365 20 6 2.5298 2.8235 8.4011 21 6 1.5643 3.6838 8.8897 22 6 1.8907 4.6057 9.8666 23 6 3.1823 4.6671 10.3553 24 6 4.1490 3.8104 9.8628 25 6 3.8215 2.8853 8.8893 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1410 -1.1384 33 1 5.7171 2.5730 -4.0837 34 1 2.6227 0.4186 2.5299 35 1 0.9444 1.0115 2.5302 36 1 1.6938 3.1306 3.5778 37 1 3.3721 2.5373 3.5772 38 1 2.6988 0.6342 5.0179 39 1 1.0209 1.2281 5.0180 40 1 2.8065 0.9368 7.4435 41 1 1.1281 1.5296 7.4437 42 1 0.5550 3.6355 8.5082 43 1 1.1365 5.2781 10.2481 44 1 3.4371 5.3872 11.1188 45 1 5.1592 3.8613 10.2415 46 1 4.5756 2.2127 8.5080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:13 Heat of formation + Delta-G solvation = -89.430232 kcal Electronic energy + Delta-G solvation = -23842.319371 eV Core-core repulsion = 20309.747806 eV Total energy + Delta-G solvation = -3532.571565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -40.82863 -40.26983 -38.68511 -37.02971 -35.07200 -34.57070 -32.69514 -31.80441 -31.79899 -29.92417 -28.01797 -26.49900 -24.49313 -24.09163 -23.48984 -22.56922 -22.07624 -19.81453 -19.11609 -18.03727 -17.85509 -17.42584 -17.35047 -16.93020 -16.53246 -16.27950 -16.04462 -15.58946 -15.09810 -14.74146 -14.65138 -14.62067 -14.30577 -14.20059 -13.79523 -13.69505 -13.39825 -13.26845 -13.24126 -12.95697 -12.85337 -12.56105 -12.35917 -12.09496 -12.05457 -12.01180 -11.89089 -11.80311 -11.75038 -11.68888 -10.84540 -10.64077 -10.54852 -9.83330 -9.76839 -9.40115 -8.35292 -6.40039 0.33174 0.48877 1.30512 1.35158 1.43322 1.82938 2.26483 2.29661 2.64259 2.98921 3.14102 3.67544 3.87554 3.91764 4.00327 4.13390 4.14538 4.24297 4.29103 4.34404 4.35531 4.42884 4.48856 4.53318 4.56202 4.62998 4.66768 4.69554 4.76600 4.81234 4.95370 5.03265 5.04686 5.07460 5.14069 5.15472 5.28620 5.42007 5.47594 5.53860 5.59904 5.66142 5.67973 6.08943 6.23564 6.28874 6.61098 6.74257 7.20919 7.45511 8.81674 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.002248 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.632257 B =12454.269636 C =13106.041110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.224 3.776 5 C -0.535 4.535 6 H 0.028 0.972 7 C 0.009 3.991 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.493 3.507 14 O -0.601 6.601 15 C -0.119 4.119 16 C -0.099 4.099 17 C 0.070 3.930 18 O -0.411 6.411 19 C 0.100 3.900 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.123 4.123 24 C -0.134 4.134 25 C -0.116 4.116 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.014 0.986 33 H 0.268 0.732 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.140 0.860 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -5.183 25.767 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.101 3.899 5 C -0.573 4.573 6 H 0.047 0.953 7 C -0.189 4.189 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.198 1.198 12 H -0.161 1.161 13 C 0.283 3.717 14 O -0.482 6.482 15 C -0.158 4.158 16 C -0.138 4.138 17 C -0.006 4.006 18 O -0.331 6.331 19 C 0.025 3.975 20 C -0.111 4.111 21 C -0.132 4.132 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.134 4.134 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.150 0.850 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.158 0.842 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.592 -4.414 25.580 28.851 hybrid contribution 0.436 0.514 -0.984 1.192 sum -12.157 -3.900 24.596 27.712 Atomic orbital electron populations 1.22165 0.93921 1.03678 1.02114 1.21805 0.95656 0.80935 1.04099 1.48104 1.64118 1.15320 1.05759 1.19273 0.94743 0.92930 0.82910 1.21573 0.97122 1.32011 1.06624 0.95336 1.25874 0.96774 0.97244 0.99034 1.70048 1.17389 1.46599 1.24503 0.85709 0.80466 0.78910 0.77819 1.20385 1.19819 1.16138 1.21480 0.76711 0.86564 0.86969 1.90644 1.48135 1.21178 1.88262 1.21570 1.06079 0.99371 0.88821 1.21127 1.01728 0.98547 0.92361 1.22522 1.01096 0.92387 0.84637 1.87952 1.89029 1.41732 1.14394 1.21436 1.01296 0.93997 0.80788 1.19884 0.94677 0.98909 0.97607 1.21335 0.99877 0.95046 0.96911 1.21484 0.97526 0.98836 0.97190 1.21551 0.93280 0.99080 1.00167 1.21471 1.00622 0.95817 0.97255 1.21329 0.95802 0.99267 0.97052 0.91634 0.93858 0.88654 0.91255 0.88040 0.93425 0.96764 0.92278 0.86677 0.85311 0.92526 0.93686 0.91369 0.90520 0.91234 0.90754 0.84969 0.83939 0.83840 0.84185 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.59 16 2 C 0.10 2.72 5.93 86.38 0.51 3.23 16 3 N -0.60 -24.38 2.46 -826.16 -2.03 -26.41 16 4 C 0.22 11.15 4.23 85.64 0.36 11.52 16 5 C -0.53 -32.13 9.94 25.60 0.25 -31.87 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.52 5.47 84.65 0.46 0.98 16 8 N -0.95 -60.76 13.96 21.44 0.30 -60.46 16 9 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 13 C 0.49 20.03 7.67 87.66 0.67 20.71 16 14 O -0.60 -31.30 15.56 -3.02 -0.05 -31.35 16 15 C -0.12 -3.06 4.25 29.85 0.13 -2.93 16 16 C -0.10 -2.78 4.87 30.59 0.15 -2.63 16 17 C 0.07 1.38 5.94 71.98 0.43 1.81 16 18 O -0.41 -10.08 10.33 -148.98 -1.54 -11.62 16 19 C 0.10 1.79 6.06 71.24 0.43 2.22 16 20 C -0.11 -2.18 5.51 -19.86 -0.11 -2.29 16 21 C -0.11 -2.04 9.70 22.27 0.22 -1.83 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 23 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 24 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 25 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 26 H 0.06 1.20 7.22 -2.39 -0.02 1.18 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 30 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 31 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 32 H 0.01 0.77 6.85 -2.39 -0.02 0.75 16 33 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 34 H 0.12 2.43 7.40 -2.38 -0.02 2.41 16 35 H 0.13 2.29 7.19 -2.39 -0.02 2.27 16 36 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 37 H 0.04 1.54 8.10 -2.38 -0.02 1.52 16 38 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.02 8.08 -2.38 -0.02 1.01 16 41 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 42 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 46 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -83.68 382.08 4.58 -79.10 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.88 Total: 14.51 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 5.13 Total: -11.12 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -1.73 Total: -86.87 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.59 Total: -42.97 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -83.68 4.58 -79.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.330 kcal (2) G-P(sol) polarization free energy of solvation -83.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds