Wall clock time and date at job start Tue Mar 31 2020 08:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.47041 * 2 1 4 4 C 1.46505 * 119.99905 * 269.99779 * 3 2 1 5 5 C 1.50697 * 109.47129 * 269.99933 * 4 3 2 6 6 H 1.08004 * 120.00054 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00029 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99836 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47481 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46911 * 120.00286 * 9 7 5 12 12 H 1.48498 * 109.47146 * 239.99797 * 9 7 5 13 13 C 1.34780 * 120.00506 * 89.99630 * 3 2 1 14 14 O 1.21281 * 120.00434 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99575 * 0.02562 * 13 3 2 16 16 C 1.52996 * 109.47094 * 180.02562 * 15 13 3 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.38263 * 119.94672 * 269.72535 * 18 17 16 20 20 C 1.38143 * 120.05579 * 179.72304 * 19 18 17 21 21 C 1.38733 * 119.94210 * 0.57301 * 20 19 18 22 22 O 1.35904 * 120.05704 * 179.67609 * 21 20 19 23 23 C 1.42900 * 116.99600 * 0.02656 * 22 21 20 24 24 C 1.38737 * 119.89046 * 359.70242 * 21 20 19 25 25 C 1.38141 * 119.94063 * 0.02562 * 24 21 20 26 26 H 1.09006 * 109.46987 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47553 * 300.00164 * 1 2 3 28 28 H 1.08996 * 109.47279 * 60.00389 * 1 2 3 29 29 H 1.09001 * 109.47283 * 239.99753 * 2 1 3 30 30 H 1.09004 * 109.46988 * 119.99777 * 2 1 3 31 31 H 1.08995 * 109.46831 * 29.99912 * 4 3 2 32 32 H 1.09004 * 109.47224 * 150.00190 * 4 3 2 33 33 H 0.96999 * 119.99994 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47561 * 59.99923 * 15 13 3 35 35 H 1.09000 * 109.46976 * 299.99617 * 15 13 3 36 36 H 1.09000 * 109.47531 * 59.99538 * 16 15 13 37 37 H 1.09008 * 109.47250 * 300.00113 * 16 15 13 38 38 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 39 39 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 40 40 H 1.08001 * 119.97259 * 359.97438 * 19 18 17 41 41 H 1.07992 * 120.02912 * 180.24892 * 20 19 18 42 42 H 1.08998 * 109.47227 * 59.99807 * 23 22 21 43 43 H 1.08996 * 109.47049 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47478 * 299.99538 * 23 22 21 45 45 H 1.07994 * 120.02908 * 179.97438 * 24 21 20 46 46 H 1.07998 * 119.97159 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3896 -2.8780 8 7 3.3491 3.1255 -3.6181 9 14 5.9135 2.0966 -3.4168 10 1 6.6012 1.2415 -2.4162 11 1 5.9216 1.4170 -4.7371 12 1 6.6204 3.3980 -3.5257 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3061 2.4723 16 6 2.3228 2.2437 3.6352 17 6 2.0677 1.5226 4.9602 18 6 2.3939 2.4460 6.1057 19 6 3.6714 2.4655 6.6342 20 6 3.9745 3.3152 7.6804 21 6 2.9926 4.1408 8.2086 22 8 3.2865 4.9729 9.2422 23 6 4.6274 4.9461 9.7354 24 6 1.7100 4.1152 7.6803 25 6 1.4136 3.2678 6.6304 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1385 33 1 3.6749 3.5154 -4.4444 34 1 2.6227 0.4188 2.5300 35 1 0.9443 1.0116 2.5302 36 1 1.6920 3.1308 3.5774 37 1 3.3706 2.5388 3.5775 38 1 2.6983 0.6354 5.0183 39 1 1.0198 1.2280 5.0177 40 1 4.4341 1.8189 6.2260 41 1 4.9735 3.3330 8.0902 42 1 5.3146 5.2195 8.9347 43 1 4.7266 5.6555 10.5569 44 1 4.8640 3.9431 10.0905 45 1 0.9438 4.7566 8.0900 46 1 0.4154 3.2478 6.2185 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:14 Heat of formation + Delta-G solvation = -89.467902 kcal Electronic energy + Delta-G solvation = -24158.402013 eV Core-core repulsion = 20625.828814 eV Total energy + Delta-G solvation = -3532.573199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08622 -40.68046 -38.74194 -36.96680 -35.50363 -34.83768 -32.08455 -31.82945 -31.38391 -29.37476 -28.43942 -27.07094 -24.97680 -24.19585 -23.57836 -22.87560 -21.59177 -19.76489 -19.07984 -18.62355 -17.78184 -17.28711 -17.19641 -16.63817 -16.55669 -16.36678 -15.97347 -15.38784 -15.07565 -14.67058 -14.63543 -14.47341 -14.38203 -14.16509 -13.96153 -13.56013 -13.27435 -13.23651 -13.02151 -12.86095 -12.75646 -12.63011 -12.59566 -12.41953 -12.14342 -11.99838 -11.80026 -11.74834 -11.73188 -11.67578 -11.43740 -10.65791 -10.51328 -9.92962 -9.39603 -9.00489 -8.22768 -6.37829 0.41544 0.46809 1.35014 1.37658 1.49560 1.92097 2.32950 2.39784 2.49337 2.81417 3.06308 3.78592 3.85555 3.87552 3.98377 4.13568 4.18869 4.29951 4.36254 4.37081 4.46073 4.49053 4.51255 4.60316 4.68788 4.70513 4.74927 4.76817 4.82861 4.97864 5.02503 5.04305 5.08143 5.10303 5.23995 5.27037 5.36139 5.42779 5.44017 5.48412 5.59472 5.76981 5.87416 5.89665 6.07329 6.46102 6.70966 6.87098 7.28852 7.56233 8.84437 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002598 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.742626 B =10774.787151 C =11832.418681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.260 3.740 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.489 3.511 14 O -0.605 6.605 15 C -0.124 4.124 16 C -0.091 4.091 17 C -0.064 4.064 18 C -0.125 4.125 19 C -0.088 4.088 20 C -0.213 4.213 21 C 0.102 3.898 22 O -0.338 6.338 23 C 0.019 3.981 24 C -0.166 4.166 25 C -0.084 4.084 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.019 0.981 32 H -0.008 1.008 33 H 0.267 0.733 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.058 0.942 43 H 0.119 0.881 44 H 0.065 0.935 45 H 0.136 0.864 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -7.316 24.939 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.139 3.861 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.279 3.721 14 O -0.487 6.487 15 C -0.163 4.163 16 C -0.130 4.130 17 C -0.102 4.102 18 C -0.126 4.126 19 C -0.106 4.106 20 C -0.231 4.231 21 C 0.058 3.942 22 O -0.253 6.253 23 C -0.075 4.075 24 C -0.185 4.185 25 C -0.102 4.102 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.037 0.963 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.077 0.923 43 H 0.137 0.863 44 H 0.084 0.916 45 H 0.154 0.846 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.941 -6.519 24.863 25.872 hybrid contribution 1.152 0.559 -0.940 1.588 sum -1.789 -5.960 23.923 24.719 Atomic orbital electron populations 1.22157 0.94647 1.03484 1.01638 1.21754 0.95264 0.81259 1.03980 1.48342 1.63941 1.15194 1.06271 1.18671 0.95247 0.91386 0.80833 1.21746 0.97879 1.31813 1.06398 0.92865 1.25907 1.02543 0.94516 0.96501 1.70065 1.37776 1.34361 1.14819 0.85343 0.78872 0.77995 0.78448 1.18959 1.19324 1.20848 1.21662 0.76792 0.86565 0.87051 1.90632 1.48519 1.21222 1.88341 1.21756 1.05629 0.99785 0.89127 1.21229 1.01093 0.97764 0.92880 1.20530 1.03778 0.96589 0.89260 1.20053 0.93981 0.99867 0.98664 1.21148 0.96576 0.97883 0.94952 1.21453 0.99976 1.00471 1.01242 1.19268 0.94638 0.91311 0.89027 1.86028 1.33003 1.59226 1.47004 1.23302 0.80252 1.03863 1.00091 1.20662 0.95010 1.03145 0.99657 1.21143 1.00236 0.94179 0.94609 0.88570 0.91787 0.94753 0.91397 0.87608 0.96253 0.98982 0.92445 0.86656 0.86165 0.93346 0.93832 0.89225 0.88829 0.84450 0.83905 0.92325 0.86328 0.91615 0.84604 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.24 71.98 0.74 -3.13 16 2 C 0.10 2.96 5.93 86.38 0.51 3.47 16 3 N -0.61 -25.93 2.46 -826.15 -2.03 -27.95 16 4 C 0.26 14.45 5.16 85.63 0.44 14.90 16 5 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 7 C 0.00 0.23 5.46 84.66 0.46 0.69 16 8 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 9 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 C 0.49 20.44 7.67 87.66 0.67 21.11 16 14 O -0.61 -32.40 15.56 -3.03 -0.05 -32.44 16 15 C -0.12 -3.19 4.25 29.85 0.13 -3.07 16 16 C -0.09 -2.40 4.49 30.59 0.14 -2.26 16 17 C -0.06 -1.14 5.34 29.85 0.16 -0.98 16 18 C -0.13 -2.60 5.14 -19.85 -0.10 -2.70 16 19 C -0.09 -1.80 9.69 22.25 0.22 -1.58 16 20 C -0.21 -4.30 9.04 22.37 0.20 -4.10 16 21 C 0.10 2.28 6.69 22.51 0.15 2.43 16 22 O -0.34 -7.03 10.50 -92.47 -0.97 -8.00 16 23 C 0.02 0.24 9.81 113.37 1.11 1.35 16 24 C -0.17 -3.61 9.99 22.37 0.22 -3.38 16 25 C -0.08 -1.72 9.69 22.25 0.22 -1.50 16 26 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 30 H 0.11 2.30 6.44 -2.39 -0.02 2.28 16 31 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 32 H -0.01 -0.51 7.42 -2.38 -0.02 -0.53 16 33 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.12 2.36 7.40 -2.39 -0.02 2.35 16 35 H 0.12 2.32 7.19 -2.39 -0.02 2.30 16 36 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 37 H 0.04 1.36 8.10 -2.38 -0.02 1.34 16 38 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 39 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.14 2.22 6.30 -2.91 -0.02 2.20 16 42 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 43 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 45 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 46 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -80.86 381.16 5.72 -75.15 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.94 Total: 13.13 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.51 Total: -10.32 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -1.74 Total: -85.21 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.02 Total: -40.44 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -80.86 5.72 -75.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.319 kcal (2) G-P(sol) polarization free energy of solvation -80.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds