Wall clock time and date at job start Tue Mar 31 2020 08:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47065 * 2 1 4 4 C 1.46503 * 119.99966 * 270.00109 * 3 2 1 5 5 C 1.50697 * 109.47257 * 269.99878 * 4 3 2 6 6 H 1.07997 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00001 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00238 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47413 * 60.00552 * 9 7 5 11 11 H 1.48502 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47352 * 299.99946 * 9 7 5 13 13 C 1.34778 * 120.00266 * 90.00228 * 3 2 1 14 14 O 1.21273 * 119.99919 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99712 * 359.97438 * 13 3 2 16 16 C 1.50698 * 109.46984 * 179.97438 * 15 13 3 17 17 C 1.38278 * 119.97369 * 269.97772 * 16 15 13 18 18 C 1.38246 * 120.11101 * 180.02562 * 17 16 15 19 19 C 1.38169 * 120.05493 * 359.68173 * 18 17 16 20 20 C 1.38710 * 119.94289 * 0.61765 * 19 18 17 21 21 O 1.35898 * 120.05891 * 179.67866 * 20 19 18 22 22 C 1.42897 * 117.00262 * 174.34627 * 21 20 19 23 23 C 1.52998 * 109.47249 * 84.85675 * 22 21 20 24 24 C 1.53003 * 109.47105 * 204.85346 * 22 21 20 25 25 C 1.38125 * 119.96712 * 89.99983 * 16 15 13 26 26 H 1.08998 * 109.47559 * 59.99870 * 1 2 3 27 27 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47038 * 299.99833 * 1 2 3 29 29 H 1.09002 * 109.47038 * 240.00167 * 2 1 3 30 30 H 1.08998 * 109.47559 * 120.00130 * 2 1 3 31 31 H 1.09004 * 109.47103 * 30.00419 * 4 3 2 32 32 H 1.09008 * 109.47205 * 150.00110 * 4 3 2 33 33 H 0.96990 * 120.00381 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46822 * 60.00187 * 15 13 3 35 35 H 1.09003 * 109.47028 * 300.00559 * 15 13 3 36 36 H 1.08002 * 119.94731 * 0.02562 * 17 16 15 37 37 H 1.07999 * 119.97004 * 179.97438 * 18 17 16 38 38 H 1.07998 * 120.02902 * 180.29528 * 19 18 17 39 39 H 1.08996 * 109.47009 * 324.85736 * 22 21 20 40 40 H 1.09008 * 109.47254 * 59.99684 * 23 22 21 41 41 H 1.08997 * 109.47731 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.46766 * 300.00060 * 23 22 21 43 43 H 1.09005 * 109.46883 * 60.00169 * 24 22 21 44 44 H 1.08997 * 109.47102 * 179.97438 * 24 22 21 45 45 H 1.08996 * 109.47505 * 300.00086 * 24 22 21 46 46 H 1.08002 * 120.03052 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1489 2.3897 -2.8781 8 7 3.3489 3.1258 -3.6182 9 14 5.9129 2.0956 -3.4177 10 1 6.1401 0.6389 -3.5950 11 1 6.1605 2.7958 -4.7037 12 1 6.8409 2.6190 -2.3832 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 6 2.3185 2.2294 3.6177 17 6 3.5974 2.2520 4.1431 18 6 3.9005 3.0973 5.1942 19 6 2.9274 3.9265 5.7181 20 6 1.6422 3.9012 5.1970 21 8 0.6816 4.7111 5.7148 22 6 -0.5836 4.7237 5.0508 23 6 -1.4429 3.5686 5.5687 24 6 -1.2923 6.0509 5.3286 25 6 1.3404 3.0517 4.1422 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5815 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6749 3.5162 -4.4440 34 1 2.6212 0.4186 2.5302 35 1 0.9432 1.0125 2.5298 36 1 4.3608 1.6083 3.7316 37 1 4.9000 3.1128 5.6030 38 1 3.1659 4.5901 6.5361 39 1 -0.4317 4.6106 3.9774 40 1 -1.5948 3.6816 6.6422 41 1 -2.4079 3.5778 5.0619 42 1 -0.9380 2.6230 5.3707 43 1 -0.6801 6.8739 4.9596 44 1 -2.2572 6.0607 4.8218 45 1 -1.4442 6.1640 6.4020 46 1 0.3415 3.0330 3.7320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:12 Heat of formation + Delta-G solvation = -60.707516 kcal Electronic energy + Delta-G solvation = -25278.351741 eV Core-core repulsion = 21747.025686 eV Total energy + Delta-G solvation = -3531.326055 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33082 -39.10056 -37.55041 -35.24989 -33.55486 -32.85738 -32.10070 -30.08754 -29.82307 -28.15579 -27.44998 -26.35653 -23.32771 -23.05452 -22.75237 -21.28490 -20.82317 -18.51001 -17.68141 -16.54427 -16.24776 -16.18503 -15.79247 -15.51349 -15.29061 -14.61234 -14.43148 -14.25201 -13.78839 -13.48040 -13.36561 -13.05089 -12.96560 -12.76185 -12.59525 -12.47842 -12.22935 -12.03825 -11.88087 -11.70773 -11.52882 -11.35758 -11.22134 -11.10417 -10.92068 -10.75114 -10.68798 -10.62176 -10.46743 -10.11734 -9.63758 -9.00608 -8.58881 -8.42021 -8.00314 -7.64364 -6.03092 -4.07748 1.47527 1.62073 3.18257 3.32325 3.36945 3.38762 3.46983 3.79023 4.12629 4.46267 4.60899 4.71442 4.82344 4.90222 4.99485 5.15296 5.19847 5.30989 5.31886 5.32933 5.35487 5.44609 5.49911 5.54847 5.56502 5.61969 5.66692 5.71655 5.79018 5.84211 5.91394 5.95986 6.02708 6.14782 6.22773 6.42330 6.47770 6.58368 6.77683 6.91267 7.08815 7.45913 7.52420 7.56986 7.93487 8.25207 8.44532 8.91743 9.12878 9.57332 11.04983 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.003572 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.799651 B = 7837.509218 C = 8267.032652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.532 6.532 15 C -0.108 4.108 16 C -0.015 4.015 17 C -0.142 4.142 18 C -0.080 4.080 19 C -0.159 4.159 20 C 0.129 3.871 21 O -0.313 6.313 22 C 0.074 3.926 23 C -0.179 4.179 24 C -0.147 4.147 25 C -0.194 4.194 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 -3.620 17.943 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.409 6.409 15 C -0.148 4.148 16 C -0.016 4.016 17 C -0.160 4.160 18 C -0.098 4.098 19 C -0.178 4.178 20 C 0.084 3.916 21 O -0.228 6.228 22 C 0.018 3.982 23 C -0.236 4.236 24 C -0.204 4.204 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.707 -2.763 17.897 20.094 hybrid contribution 0.850 -0.337 -0.714 1.160 sum -7.858 -3.100 17.183 19.147 Atomic orbital electron populations 1.22224 0.96904 1.01380 1.02246 1.21415 0.93437 0.84315 1.02684 1.48262 1.63963 1.13216 1.07672 1.19244 0.96196 0.93595 0.78138 1.21402 0.96967 1.31914 1.06214 0.92551 1.24931 0.97813 0.94930 0.96401 1.69916 1.35727 1.33428 1.14370 0.86570 0.84868 0.78224 0.77829 1.20256 1.21183 1.20178 1.20117 0.78873 0.87013 0.84689 1.90698 1.45139 1.17954 1.87065 1.20838 1.03534 0.98486 0.91930 1.19156 0.93283 0.95227 0.93893 1.20905 0.95952 1.01413 0.97768 1.20861 0.98458 0.94726 0.95797 1.20336 0.90617 1.03250 1.03596 1.18879 0.88792 0.90742 0.93187 1.86075 1.21362 1.61510 1.53839 1.22429 0.81871 0.96627 0.97285 1.22379 1.00175 0.98632 1.02431 1.21840 1.00125 0.95606 1.02878 1.21045 1.00634 1.00219 0.99383 0.92058 0.92175 0.93166 0.89969 0.91711 0.95104 0.94006 0.92689 0.88388 0.88787 0.86067 0.85572 0.85686 0.90610 0.91588 0.91074 0.91762 0.91577 0.90579 0.91648 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.54 2.46 -175.06 -0.43 -12.97 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.46 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.55 7.67 -10.98 -0.08 10.47 16 14 O -0.53 -13.67 15.61 5.56 0.09 -13.58 16 15 C -0.11 -1.62 4.38 -29.03 -0.13 -1.75 16 16 C -0.02 -0.24 4.37 -104.65 -0.46 -0.69 16 17 C -0.14 -2.13 9.70 -39.56 -0.38 -2.52 16 18 C -0.08 -1.09 10.04 -39.60 -0.40 -1.48 16 19 C -0.16 -2.21 9.99 -39.43 -0.39 -2.60 16 20 C 0.13 1.90 6.60 -39.22 -0.26 1.64 16 21 O -0.31 -4.27 9.80 -19.42 -0.19 -4.46 16 22 C 0.07 0.82 2.85 -26.73 -0.08 0.74 16 23 C -0.18 -1.61 9.17 37.16 0.34 -1.27 16 24 C -0.15 -1.31 9.56 37.16 0.36 -0.95 16 25 C -0.19 -2.92 7.89 -39.43 -0.31 -3.23 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.25 7.42 -51.92 -0.39 0.86 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.10 1.27 7.34 -51.93 -0.38 0.88 16 35 H 0.09 1.17 7.13 -51.93 -0.37 0.80 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.08 0.91 6.31 -51.93 -0.33 0.58 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.62 6.90 -51.93 -0.36 0.26 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.13 1.71 5.43 -52.49 -0.28 1.43 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -34.30 378.03 -8.43 -42.74 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.43 Total: 0.68 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.88 Total: -9.04 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.31 Total: -39.02 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.10 Total: -18.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.30 -8.43 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.971 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds