Wall clock time and date at job start Tue Mar 31 2020 08:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47250 * 2 1 4 4 C 1.46499 * 119.99698 * 269.99743 * 3 2 1 5 5 C 1.50692 * 109.47299 * 269.99498 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00344 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99755 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46743 * 90.00307 * 9 7 5 11 11 H 1.48499 * 109.47107 * 210.00146 * 9 7 5 12 12 H 1.48494 * 109.47202 * 330.00130 * 9 7 5 13 13 C 1.34774 * 120.00284 * 89.99333 * 3 2 1 14 14 O 1.21280 * 120.00521 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99710 * 0.02562 * 13 3 2 16 16 C 1.53006 * 109.47131 * 179.97438 * 15 13 3 17 17 H 1.09000 * 109.47050 * 305.00095 * 16 15 13 18 18 C 1.52999 * 109.46626 * 64.99793 * 16 15 13 19 19 C 1.50697 * 109.47239 * 184.99759 * 16 15 13 20 20 C 1.38165 * 120.03189 * 299.72949 * 19 16 15 21 21 C 1.38240 * 120.05431 * 179.76917 * 20 19 16 22 22 C 1.38286 * 120.11544 * 0.50680 * 21 20 19 23 23 C 1.38123 * 120.05383 * 359.74315 * 22 21 20 24 24 C 1.38712 * 120.02413 * 120.00207 * 19 16 15 25 25 O 1.35896 * 120.05686 * 359.97438 * 24 19 16 26 26 C 1.42907 * 117.00129 * 180.02562 * 25 24 19 27 27 H 1.08994 * 109.46901 * 300.00249 * 1 2 3 28 28 H 1.09003 * 109.46955 * 60.00549 * 1 2 3 29 29 H 1.08997 * 109.46609 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47533 * 239.99787 * 2 1 3 31 31 H 1.09003 * 109.46955 * 119.99451 * 2 1 3 32 32 H 1.08997 * 109.47435 * 30.00136 * 4 3 2 33 33 H 1.09004 * 109.46773 * 149.99663 * 4 3 2 34 34 H 0.96997 * 119.99851 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47057 * 60.00280 * 15 13 3 36 36 H 1.08992 * 109.47337 * 299.99626 * 15 13 3 37 37 H 1.09002 * 109.46719 * 180.02562 * 18 16 15 38 38 H 1.08993 * 109.47839 * 299.99931 * 18 16 15 39 39 H 1.09000 * 109.47160 * 60.00369 * 18 16 15 40 40 H 1.07999 * 119.96941 * 0.02562 * 20 19 16 41 41 H 1.08006 * 119.94312 * 180.25125 * 21 20 19 42 42 H 1.07997 * 119.97241 * 179.76969 * 22 21 20 43 43 H 1.07997 * 120.02908 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.47312 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.46811 * 300.00129 * 26 25 24 46 46 H 1.09000 * 109.46834 * 59.99889 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2303 -1.0961 7 6 4.1493 2.3895 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9133 2.0954 -3.4174 10 1 5.9762 0.8742 -4.2600 11 1 6.3925 3.2625 -4.2008 12 1 6.7736 1.9159 -2.2204 13 6 2.2429 2.0166 1.1671 14 8 2.6468 3.1602 1.1672 15 6 1.9921 1.3061 2.4723 16 6 2.3240 2.2433 3.6352 17 1 3.3456 2.6077 3.5281 18 6 1.3563 3.4284 3.6270 19 6 2.1912 1.4954 4.9368 20 6 0.9770 0.9429 5.2961 21 6 0.8559 0.2526 6.4877 22 6 1.9465 0.1223 7.3279 23 6 3.1613 0.6772 6.9757 24 6 3.2867 1.3661 5.7778 25 8 4.4809 1.9130 5.4290 26 6 5.5656 1.7399 6.3432 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6753 3.5159 -4.4441 35 1 2.6227 0.4188 2.5299 36 1 0.9444 1.0116 2.5302 37 1 1.5930 4.0964 4.4553 38 1 1.4522 3.9694 2.6857 39 1 0.3346 3.0640 3.7342 40 1 0.1227 1.0467 4.6435 41 1 -0.0932 -0.1821 6.7648 42 1 1.8483 -0.4143 8.2600 43 1 4.0128 0.5749 7.6320 44 1 6.4575 2.2231 5.9445 45 1 5.3071 2.1882 7.3026 46 1 5.7594 0.6760 6.4797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103210016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:25 Heat of formation + Delta-G solvation = -60.454801 kcal Electronic energy + Delta-G solvation = -25501.577982 eV Core-core repulsion = 21970.262885 eV Total energy + Delta-G solvation = -3531.315097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.45841 -39.08073 -37.54331 -35.50879 -34.60569 -32.73251 -30.25428 -30.12660 -29.84933 -28.17963 -27.29870 -26.32135 -23.74076 -22.95113 -22.41795 -22.08199 -20.07333 -18.16343 -18.04526 -16.67391 -16.39344 -16.09789 -15.82388 -15.44749 -15.24879 -14.80751 -14.50272 -14.27853 -13.83438 -13.59387 -13.30249 -13.26783 -13.04637 -12.63771 -12.41406 -12.20677 -12.05639 -11.92361 -11.82289 -11.64366 -11.27573 -11.20956 -11.13670 -10.96628 -10.86709 -10.65484 -10.53398 -10.41263 -10.36858 -10.06947 -9.55753 -8.93521 -8.68277 -8.38637 -8.18521 -7.55635 -5.99307 -4.03474 1.23802 1.36963 3.22058 3.33046 3.39538 3.44016 3.56678 3.66923 4.04657 4.49003 4.64606 4.70943 4.91367 4.95015 5.00540 5.16086 5.19757 5.33748 5.34706 5.36217 5.38244 5.40908 5.46877 5.56396 5.68336 5.72051 5.82140 5.91726 5.99806 6.02900 6.10750 6.23039 6.25380 6.29595 6.35184 6.42666 6.55340 6.71546 6.73662 6.75208 7.15641 7.34024 7.52161 7.64903 7.98124 8.30393 8.53999 8.97183 9.22226 9.61622 11.08708 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.003730 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.765129 B = 7505.601428 C = 8440.458059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.538 6.538 15 C -0.130 4.130 16 C -0.031 4.031 17 H 0.094 0.906 18 C -0.145 4.145 19 C -0.099 4.099 20 C -0.078 4.078 21 C -0.157 4.157 22 C -0.090 4.090 23 C -0.209 4.209 24 C 0.129 3.871 25 O -0.309 6.309 26 C 0.028 3.972 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 -8.045 21.103 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.416 6.416 15 C -0.171 4.171 16 C -0.050 4.050 17 H 0.112 0.888 18 C -0.202 4.202 19 C -0.099 4.099 20 C -0.096 4.096 21 C -0.175 4.175 22 C -0.108 4.108 23 C -0.228 4.228 24 C 0.084 3.916 25 O -0.222 6.222 26 C -0.067 4.067 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.118 0.882 45 H 0.071 0.929 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.107 -7.211 20.727 22.327 hybrid contribution 1.084 -0.481 -0.085 1.188 sum -3.024 -7.692 20.642 22.235 Atomic orbital electron populations 1.22216 0.96925 1.01280 1.02254 1.21392 0.93415 0.84406 1.02554 1.48259 1.63877 1.13163 1.07820 1.19230 0.96090 0.93637 0.78310 1.21458 0.97028 1.31658 1.06111 0.92534 1.24932 0.97769 0.94988 0.96448 1.69933 1.35650 1.33590 1.14327 0.86517 0.84853 0.77617 0.78563 1.20704 1.21121 1.19910 1.20297 0.78324 0.86968 0.85086 1.90625 1.45733 1.18109 1.87137 1.21785 1.02736 0.99409 0.93127 1.19735 1.02531 0.94141 0.88589 0.88786 1.21938 0.97283 0.97483 1.03503 1.19408 0.91466 1.02004 0.97068 1.20893 0.96410 0.95980 0.96342 1.21018 0.98892 1.02181 0.95451 1.20866 0.92358 0.98439 0.99164 1.21192 0.99496 1.04533 0.97585 1.18900 0.85766 0.93729 0.93207 1.86161 1.17122 1.72507 1.46402 1.23052 0.88657 1.01585 0.93451 0.93054 0.92128 0.92302 0.90164 0.91753 0.95222 0.93937 0.92803 0.89750 0.89769 0.93318 0.89794 0.93600 0.85386 0.86100 0.86169 0.85732 0.88177 0.92876 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.76 5.93 -4.04 -0.02 1.73 16 3 N -0.60 -12.88 2.46 -175.06 -0.43 -13.31 16 4 C 0.25 6.55 5.16 -5.20 -0.03 6.52 16 5 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.67 7.39 -10.99 -0.08 10.59 16 14 O -0.54 -13.52 13.54 5.56 0.08 -13.44 16 15 C -0.13 -2.05 3.47 -27.88 -0.10 -2.15 16 16 C -0.03 -0.49 2.17 -91.77 -0.20 -0.69 16 17 H 0.09 1.72 6.81 -51.93 -0.35 1.37 16 18 C -0.15 -2.21 8.74 37.16 0.32 -1.88 16 19 C -0.10 -1.32 4.79 -104.48 -0.50 -1.82 16 20 C -0.08 -0.88 8.76 -39.61 -0.35 -1.23 16 21 C -0.16 -1.54 10.04 -39.56 -0.40 -1.94 16 22 C -0.09 -0.86 10.04 -39.61 -0.40 -1.26 16 23 C -0.21 -2.23 9.04 -39.43 -0.36 -2.59 16 24 C 0.13 1.69 6.66 -39.21 -0.26 1.43 16 25 O -0.31 -4.20 9.26 -19.41 -0.18 -4.38 16 26 C 0.03 0.25 9.81 101.05 0.99 1.24 16 27 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 1.26 7.40 -51.93 -0.38 0.88 16 36 H 0.08 1.12 6.63 -51.93 -0.34 0.77 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.53 5.95 -51.93 -0.31 1.22 16 39 H 0.04 0.60 7.38 -51.93 -0.38 0.21 16 40 H 0.13 1.27 7.16 -52.49 -0.38 0.89 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 46 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -34.01 371.50 -7.92 -41.93 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.29 Total: 0.40 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.41 Total: -7.75 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.31 Total: -39.56 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.10 Total: -17.82 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.01 -7.92 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.524 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds