Wall clock time and date at job start Tue Mar 31 2020 09:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47072 * 2 1 4 4 C 1.37099 * 119.99869 * 263.55490 * 3 2 1 5 5 H 1.07998 * 119.99852 * 188.38773 * 4 3 2 6 6 C 1.38948 * 120.00031 * 8.38922 * 4 3 2 7 7 N 1.31411 * 119.99964 * 25.16963 * 6 4 3 8 8 Si 1.86796 * 119.99885 * 205.16950 * 6 4 3 9 9 H 1.48499 * 109.47211 * 84.99068 * 8 6 4 10 10 H 1.48506 * 109.47382 * 204.98647 * 8 6 4 11 11 H 1.48497 * 109.47532 * 324.98844 * 8 6 4 12 12 C 1.34775 * 120.00079 * 83.55393 * 3 2 1 13 13 O 1.21290 * 120.00035 * 180.02562 * 12 3 2 14 14 C 1.50697 * 120.00050 * 0.02562 * 12 3 2 15 15 C 1.52996 * 109.47150 * 180.02562 * 14 12 3 16 16 O 1.42905 * 109.47416 * 180.02562 * 15 14 12 17 17 C 1.35899 * 117.00164 * 180.02562 * 16 15 14 18 18 C 1.38748 * 120.05762 * 359.97076 * 17 16 15 19 19 C 1.38120 * 119.94434 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.97259 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.05510 * 359.73127 * 19 18 17 22 22 C 1.38238 * 120.11215 * 0.54401 * 21 19 18 23 23 C 1.50707 * 119.97501 * 179.72342 * 22 21 19 24 24 C 1.38171 * 120.05689 * 359.45381 * 22 21 19 25 25 C 1.50696 * 120.03114 * 180.29681 * 24 22 21 26 26 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47489 * 299.99853 * 1 2 3 28 28 H 1.09004 * 109.47145 * 60.00290 * 1 2 3 29 29 H 1.09003 * 109.47127 * 239.99850 * 2 1 3 30 30 H 1.09004 * 109.47145 * 119.99710 * 2 1 3 31 31 H 0.97001 * 119.99942 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47207 * 59.99813 * 14 12 3 33 33 H 1.09003 * 109.47393 * 300.00039 * 14 12 3 34 34 H 1.08995 * 109.47600 * 60.00104 * 15 14 12 35 35 H 1.09003 * 109.47183 * 299.99745 * 15 14 12 36 36 H 1.08007 * 120.02898 * 0.02562 * 18 17 16 37 37 H 1.08998 * 109.47580 * 90.00057 * 20 19 18 38 38 H 1.08999 * 109.47234 * 210.00949 * 20 19 18 39 39 H 1.09004 * 109.46946 * 329.99988 * 20 19 18 40 40 H 1.08002 * 119.94301 * 180.28637 * 21 19 18 41 41 H 1.09001 * 109.47228 * 269.72963 * 23 22 21 42 42 H 1.09001 * 109.46693 * 29.72964 * 23 22 21 43 43 H 1.08993 * 109.46762 * 149.72777 * 23 22 21 44 44 H 1.08997 * 109.47505 * 89.99534 * 25 24 22 45 45 H 1.09002 * 109.47123 * 210.00200 * 25 24 22 46 46 H 1.09006 * 109.47128 * 329.99472 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9830 -1.1798 5 1 2.8579 2.9477 -1.1695 6 6 2.1068 1.3519 -2.3888 7 7 1.1283 0.4788 -2.4732 8 14 3.1406 1.7445 -3.8943 9 1 4.3647 0.9038 -3.8872 10 1 2.3540 1.4630 -5.1221 11 1 3.5249 3.1787 -3.8707 12 6 2.1194 2.0602 1.1598 13 8 2.5233 3.2039 1.1597 14 6 1.7307 1.3985 2.4567 15 6 1.9383 2.3796 3.6121 16 8 1.5702 1.7520 4.8421 17 6 1.6953 2.4929 5.9745 18 6 2.1634 3.7971 5.9035 19 6 2.2901 4.5478 7.0559 20 6 2.7989 5.9642 6.9796 21 6 1.9457 4.0024 8.2791 22 6 1.4845 2.7013 8.3532 23 6 1.1160 2.1080 9.6887 24 6 1.3559 1.9461 7.2033 25 6 0.8467 0.5301 7.2840 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.9426 0.0385 -3.3173 32 1 2.3498 0.5153 2.6138 33 1 0.6820 1.1042 2.4144 34 1 1.3188 3.2626 3.4549 35 1 2.9868 2.6743 3.6547 36 1 2.4284 4.2250 4.9479 37 1 1.9587 6.6455 6.8459 38 1 3.3242 6.2118 7.9020 39 1 3.4822 6.0599 6.1357 40 1 2.0412 4.5926 9.1786 41 1 1.9903 1.6256 10.1257 42 1 0.7668 2.8981 10.3533 43 1 0.3244 1.3712 9.5528 44 1 -0.2390 0.5283 7.1882 45 1 1.2836 -0.0596 6.4780 46 1 1.1275 0.0972 8.2442 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107133248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:00 Heat of formation + Delta-G solvation = -72.296928 kcal Electronic energy + Delta-G solvation = -24916.793451 eV Core-core repulsion = 21384.964841 eV Total energy + Delta-G solvation = -3531.828610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.42383 -40.53260 -38.86254 -37.09465 -35.26210 -34.03470 -33.10606 -31.64252 -31.13331 -30.12256 -28.02998 -27.33563 -25.82863 -24.83398 -23.85981 -22.55591 -21.24498 -20.37334 -18.91823 -18.59142 -17.64379 -17.39653 -17.29267 -16.49053 -16.27575 -16.01649 -15.82682 -15.04291 -14.87925 -14.58093 -14.51088 -14.25575 -14.19038 -13.95516 -13.77594 -13.68854 -13.62169 -13.42355 -13.09316 -12.92990 -12.77822 -12.75147 -12.65904 -12.49516 -12.27881 -12.16908 -12.12111 -11.99858 -11.68734 -11.61242 -11.47922 -10.85425 -10.41601 -9.75234 -9.45350 -9.01449 -8.36598 -5.86709 0.32743 0.47481 1.35046 1.42658 1.52493 1.93688 1.99683 2.32095 2.71203 3.02689 3.17119 3.71931 3.81996 3.89243 3.91118 4.04793 4.07923 4.21543 4.26967 4.32554 4.45056 4.55053 4.63879 4.66392 4.71935 4.77081 4.80227 4.82183 4.86339 4.87782 4.89421 4.93152 4.95207 5.11302 5.13949 5.20948 5.40532 5.41550 5.46214 5.47864 5.59634 5.68276 5.89191 5.92478 6.04824 6.41265 6.50165 7.14952 7.46148 8.00692 8.61740 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024831 B = 0.002882 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.360774 B = 9711.982247 C =10666.041351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.117 3.883 3 N -0.446 5.446 4 C -0.354 4.354 5 H 0.072 0.928 6 C 0.007 3.993 7 N -0.865 5.865 8 Si 0.981 3.019 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.431 3.569 13 O -0.641 6.641 14 C -0.112 4.112 15 C 0.096 3.904 16 O -0.319 6.319 17 C 0.113 3.887 18 C -0.233 4.233 19 C -0.059 4.059 20 C -0.114 4.114 21 C -0.160 4.160 22 C -0.052 4.052 23 C -0.112 4.112 24 C -0.142 4.142 25 C -0.101 4.101 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.275 0.725 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.194 -1.050 20.896 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.005 4.005 3 N -0.164 5.164 4 C -0.481 4.481 5 H 0.090 0.910 6 C -0.196 4.196 7 N -0.502 5.502 8 Si 0.805 3.195 9 H -0.194 1.194 10 H -0.197 1.197 11 H -0.205 1.205 12 C 0.221 3.779 13 O -0.531 6.531 14 C -0.152 4.152 15 C 0.020 3.980 16 O -0.233 6.233 17 C 0.068 3.932 18 C -0.252 4.252 19 C -0.059 4.059 20 C -0.170 4.170 21 C -0.178 4.178 22 C -0.052 4.052 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.158 4.158 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.166 0.834 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.179 -0.876 20.676 20.728 hybrid contribution 0.513 0.607 -1.578 1.767 sum -0.666 -0.270 19.098 19.111 Atomic orbital electron populations 1.21974 0.95481 1.01404 1.00854 1.21590 0.95473 0.81946 1.01536 1.44025 1.54766 1.12435 1.05152 1.19582 1.38798 1.05770 0.83969 0.90970 1.25855 0.96252 0.96771 1.00757 1.70186 1.24262 1.28072 1.27717 0.85151 0.78701 0.78430 0.77231 1.19439 1.19676 1.20517 1.20379 0.84908 0.86541 0.86121 1.90474 1.54318 1.20473 1.87804 1.21258 1.04721 0.99277 0.89962 1.22146 0.99799 0.95177 0.80888 1.85926 1.82248 1.41436 1.13667 1.19143 0.96881 0.90534 0.86645 1.21292 1.09095 0.94840 0.99977 1.19999 0.96592 0.96957 0.92379 1.20851 1.01388 0.91195 1.03597 1.21110 1.03550 0.95628 0.97531 1.19979 0.96344 0.93574 0.95339 1.20887 1.02597 1.01781 0.91514 1.19419 1.06204 0.98984 0.89667 1.20631 1.01013 0.90919 1.03218 0.91367 0.94707 0.92253 0.89763 0.91595 0.91487 0.87543 0.87830 0.92855 0.92566 0.86700 0.90248 0.89312 0.92101 0.83382 0.89735 0.89845 0.90360 0.91042 0.92381 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 9.64 71.98 0.69 -4.88 16 2 C 0.12 5.07 5.07 86.38 0.44 5.51 16 3 N -0.45 -22.98 2.64 -635.54 -1.68 -24.66 16 4 C -0.35 -20.05 9.43 84.04 0.79 -19.26 16 5 H 0.07 4.46 7.31 -2.91 -0.02 4.44 16 6 C 0.01 0.38 4.90 84.93 0.42 0.79 16 7 N -0.86 -43.29 8.65 21.66 0.19 -43.11 16 8 Si 0.98 41.68 29.62 68.60 2.03 43.72 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.43 21.45 7.58 87.66 0.66 22.11 16 13 O -0.64 -36.86 15.57 -3.06 -0.05 -36.91 16 14 C -0.11 -4.25 4.68 29.85 0.14 -4.11 16 15 C 0.10 3.51 4.03 71.98 0.29 3.80 16 16 O -0.32 -10.74 9.18 -92.41 -0.85 -11.59 16 17 C 0.11 3.54 6.66 22.51 0.15 3.69 16 18 C -0.23 -7.14 8.69 22.36 0.19 -6.94 16 19 C -0.06 -1.46 5.88 -19.88 -0.12 -1.58 16 20 C -0.11 -2.17 10.01 71.24 0.71 -1.46 16 21 C -0.16 -3.35 9.35 22.28 0.21 -3.14 16 22 C -0.05 -1.10 5.88 -19.88 -0.12 -1.22 16 23 C -0.11 -1.43 9.19 71.24 0.66 -0.78 16 24 C -0.14 -3.66 5.89 -19.77 -0.12 -3.78 16 25 C -0.10 -2.12 8.97 71.23 0.64 -1.48 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.03 1.30 6.45 -2.39 -0.02 1.28 16 28 H 0.06 2.79 6.38 -2.38 -0.02 2.77 16 29 H 0.08 3.94 5.83 -2.39 -0.01 3.93 16 30 H 0.07 2.40 6.71 -2.38 -0.02 2.38 16 31 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 32 H 0.11 3.57 7.42 -2.39 -0.02 3.55 16 33 H 0.10 3.64 6.41 -2.39 -0.02 3.62 16 34 H 0.05 2.08 7.62 -2.39 -0.02 2.06 16 35 H 0.06 2.16 7.62 -2.39 -0.02 2.14 16 36 H 0.12 3.78 6.30 -2.91 -0.02 3.76 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 39 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.81 8.08 -2.39 -0.02 0.80 16 43 H 0.08 0.90 6.70 -2.39 -0.02 0.89 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.35 7.53 -2.39 -0.02 1.34 16 46 H 0.09 1.36 6.70 -2.38 -0.02 1.34 16 Total: -1.00 -66.77 365.00 6.26 -60.51 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.97 Total: 24.75 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 5.64 Total: -12.72 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.49 Total: -67.76 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.90 Total: -48.50 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.72 kcal Total: -66.77 6.26 -60.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107133248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.787 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds