Wall clock time and date at job start Tue Mar 31 2020 08:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99776 * 2 1 4 4 C 1.50699 * 109.46816 * 125.00728 * 3 2 1 5 5 C 1.38175 * 120.02390 * 265.01642 * 4 3 2 6 6 C 1.38241 * 120.05189 * 179.97438 * 5 4 3 7 7 C 1.38282 * 120.11445 * 0.02976 * 6 5 4 8 8 C 1.38121 * 120.05501 * 359.67564 * 7 6 5 9 9 C 1.38705 * 120.03260 * 85.00181 * 4 3 2 10 10 O 1.35902 * 120.05507 * 0.02562 * 9 4 3 11 11 C 1.42895 * 117.00317 * 180.02562 * 10 9 4 12 12 C 1.52998 * 109.47498 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46897 * 305.00109 * 12 11 10 14 14 O 1.42905 * 109.47092 * 64.99609 * 12 11 10 15 15 C 1.52998 * 109.47473 * 184.99797 * 12 11 10 16 16 N 1.46498 * 109.47503 * 179.97438 * 15 12 11 17 17 C 1.36932 * 120.00341 * 270.00231 * 16 15 12 18 18 H 1.07998 * 120.00457 * 146.01060 * 17 16 15 19 19 C 1.38814 * 119.99882 * 326.02009 * 17 16 15 20 20 N 1.31621 * 119.99646 * 336.65331 * 19 17 16 21 21 Si 1.86798 * 120.00088 * 156.66000 * 19 17 16 22 22 H 1.48498 * 109.47629 * 89.99591 * 21 19 17 23 23 H 1.48506 * 109.47064 * 209.99585 * 21 19 17 24 24 H 1.48505 * 109.47145 * 329.99084 * 21 19 17 25 25 C 1.46501 * 119.99690 * 90.00043 * 16 15 12 26 26 C 1.53002 * 109.47251 * 90.89147 * 25 16 15 27 27 H 1.08000 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99801 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00146 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47086 * 5.00368 * 3 2 1 31 31 H 1.09003 * 109.47049 * 245.00363 * 3 2 1 32 32 H 1.07999 * 119.96961 * 0.02562 * 5 4 3 33 33 H 1.08005 * 119.94366 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.97353 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.03096 * 180.32520 * 8 7 6 36 36 H 1.08999 * 109.47288 * 59.99599 * 11 10 9 37 37 H 1.09009 * 109.47127 * 300.00335 * 11 10 9 38 38 H 0.96702 * 113.99742 * 60.00550 * 14 12 11 39 39 H 1.09002 * 109.47023 * 300.00484 * 15 12 11 40 40 H 1.09008 * 109.47156 * 59.99716 * 15 12 11 41 41 H 0.97008 * 119.99614 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46787 * 210.89148 * 25 16 15 43 43 H 1.09000 * 109.47373 * 330.89062 * 25 16 15 44 44 H 1.09000 * 109.47001 * 59.99687 * 26 25 16 45 45 H 1.08993 * 109.47280 * 180.02562 * 26 25 16 46 46 H 1.09004 * 109.46523 * 299.99897 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0205 1.3326 1.1638 5 6 2.6459 1.9280 2.3530 6 6 3.5232 1.9531 3.4211 7 6 4.7775 1.3832 3.3023 8 6 5.1544 0.7814 2.1176 9 6 4.2779 0.7599 1.0422 10 8 4.6488 0.1738 -0.1266 11 6 5.9581 -0.3960 -0.1798 12 6 6.1940 -1.0039 -1.5638 13 1 5.4003 -1.7167 -1.7877 14 8 6.1931 0.0339 -2.5463 15 6 7.5447 -1.7223 -1.5820 16 7 7.7703 -2.3048 -2.9071 17 6 7.3475 -3.5792 -3.1758 18 1 6.9958 -3.8343 -4.1646 19 6 7.3707 -4.5432 -2.1773 20 7 8.1853 -4.4093 -1.1522 21 14 6.2461 -6.0306 -2.2887 22 1 6.9408 -7.1233 -3.0157 23 1 5.8967 -6.4904 -0.9205 24 1 5.0066 -5.6605 -3.0181 25 6 8.4483 -1.5239 -3.9448 26 6 9.9544 -1.7847 -3.8771 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.6667 2.3735 2.4484 33 1 3.2284 2.4186 4.3501 34 1 5.4612 1.4044 4.1381 35 1 6.1322 0.3318 2.0269 36 1 6.0471 -1.1736 0.5789 37 1 6.7002 0.3803 0.0070 38 1 6.8754 0.7054 -2.4096 39 1 8.3384 -1.0094 -1.3581 40 1 7.5454 -2.5139 -0.8326 41 1 8.2018 -5.0832 -0.4546 42 1 8.0723 -1.8180 -4.9247 43 1 8.2558 -0.4630 -3.7851 44 1 10.1469 -2.8456 -4.0367 45 1 10.4589 -1.2034 -4.6488 46 1 10.3303 -1.4906 -2.8971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118001754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:02 Heat of formation + Delta-G solvation = -31.807310 kcal Electronic energy + Delta-G solvation = -25304.195501 eV Core-core repulsion = 21774.122653 eV Total energy + Delta-G solvation = -3530.072848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -40.20646 -37.96048 -36.68728 -35.13195 -34.90442 -31.83548 -31.33761 -30.61306 -29.75074 -28.39199 -26.34326 -25.67136 -23.70387 -22.26636 -21.76190 -20.91088 -20.14072 -19.71379 -17.93054 -16.96912 -16.19788 -16.01546 -15.82977 -15.10421 -14.85627 -14.78721 -14.41125 -14.28581 -13.96149 -13.68347 -13.38140 -13.30883 -13.11546 -12.69271 -12.33746 -12.25270 -11.93217 -11.86207 -11.50709 -11.22807 -11.15335 -11.09344 -10.89480 -10.78463 -10.68646 -10.45399 -10.23966 -10.13976 -10.06321 -9.78149 -9.35569 -9.30148 -8.85308 -8.55251 -8.03891 -6.63964 -5.84355 -3.36508 1.29825 1.47567 2.34668 3.31444 3.39232 3.41925 3.46593 3.76265 4.45827 4.76966 4.79309 4.97399 5.00054 5.09077 5.16641 5.20493 5.27271 5.31613 5.36408 5.42378 5.55150 5.63591 5.69705 5.83357 5.84731 5.98026 6.06301 6.13222 6.18035 6.21099 6.36553 6.42785 6.46712 6.51829 6.54442 6.65790 6.69651 6.80696 6.85080 6.95259 6.99248 7.24259 7.43246 7.59618 7.78597 8.28092 8.44306 9.12665 9.76923 10.33346 11.15496 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.003840 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.780770 B = 7289.244272 C = 7851.759305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.046 4.046 4 C -0.115 4.115 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.084 4.084 8 C -0.210 4.210 9 C 0.140 3.860 10 O -0.299 6.299 11 C 0.029 3.971 12 C 0.089 3.911 13 H 0.103 0.897 14 O -0.551 6.551 15 C 0.121 3.879 16 N -0.573 5.573 17 C -0.252 4.252 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.146 3.854 26 C -0.164 4.164 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.357 0.643 39 H 0.028 0.972 40 H 0.108 0.892 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 12.900 7.369 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.149 4.149 3 C -0.083 4.083 4 C -0.116 4.116 5 C -0.098 4.098 6 C -0.184 4.184 7 C -0.102 4.102 8 C -0.229 4.229 9 C 0.094 3.906 10 O -0.212 6.212 11 C -0.047 4.047 12 C 0.028 3.972 13 H 0.121 0.879 14 O -0.354 6.354 15 C -0.007 4.007 16 N -0.293 5.293 17 C -0.382 4.382 18 H 0.080 0.920 19 C -0.193 4.193 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.020 3.980 26 C -0.224 4.224 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.202 0.798 39 H 0.046 0.954 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.405 12.393 7.046 16.549 hybrid contribution 0.245 -0.670 0.655 0.968 sum -8.160 11.723 7.701 16.227 Atomic orbital electron populations 1.23757 0.95759 1.01517 1.03349 1.22914 0.95682 0.98526 0.97798 1.19582 0.96346 0.95497 0.96887 1.19112 0.93058 1.02789 0.96656 1.20828 0.99157 0.98049 0.91796 1.20955 0.94678 1.03693 0.99034 1.20916 0.96232 0.96278 0.96767 1.21329 1.00943 1.06385 0.94238 1.18993 0.93081 0.92781 0.85763 1.86216 1.34308 1.69483 1.31178 1.23856 0.81695 0.97187 1.01957 1.23054 1.02920 0.88457 0.82810 0.87886 1.86633 1.58129 1.38126 1.52511 1.21462 0.89994 0.97337 0.91888 1.43609 1.64807 1.11989 1.08866 1.19109 1.35708 0.85676 0.97734 0.91952 1.25053 0.98174 0.97238 0.98839 1.69971 1.35182 1.35391 1.12802 0.86441 0.81394 0.82874 0.77036 1.21226 1.21480 1.20259 1.20870 0.90304 0.94036 0.92745 1.22310 0.99400 1.01386 0.99295 0.88854 0.88647 0.87204 0.91020 0.89254 0.85823 0.86258 0.86087 0.85337 0.91279 0.92447 0.79788 0.95381 0.87432 0.93567 0.94103 0.94335 0.92749 0.95055 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.27 14.32 29.01 0.42 -1.86 16 2 C -0.13 -1.68 9.50 -36.03 -0.34 -2.03 16 3 C -0.05 -0.58 5.51 -29.04 -0.16 -0.74 16 4 C -0.12 -1.54 5.13 -104.47 -0.54 -2.08 16 5 C -0.08 -0.92 9.68 -39.60 -0.38 -1.30 16 6 C -0.17 -1.80 10.04 -39.56 -0.40 -2.20 16 7 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 8 C -0.21 -2.83 9.04 -39.43 -0.36 -3.18 16 9 C 0.14 2.09 6.66 -39.22 -0.26 1.83 16 10 O -0.30 -4.97 9.24 -24.28 -0.22 -5.19 16 11 C 0.03 0.47 4.37 37.16 0.16 0.63 16 12 C 0.09 1.72 3.52 -26.73 -0.09 1.62 16 13 H 0.10 2.29 8.14 -51.93 -0.42 1.86 16 14 O -0.55 -10.22 12.04 -40.08 -0.48 -10.70 16 15 C 0.12 2.62 4.99 -4.04 -0.02 2.60 16 16 N -0.57 -13.75 2.37 -173.24 -0.41 -14.16 16 17 C -0.25 -6.76 9.48 -15.06 -0.14 -6.90 16 18 H 0.06 1.69 7.93 -52.49 -0.42 1.28 16 19 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 20 N -0.89 -24.55 11.34 55.49 0.63 -23.92 16 21 Si 0.89 21.24 29.61 -169.99 -5.03 16.21 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.15 3.06 6.12 -4.04 -0.02 3.03 16 26 C -0.16 -3.23 10.24 37.16 0.38 -2.85 16 27 H 0.09 0.88 7.84 -52.49 -0.41 0.47 16 28 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 31 H 0.09 1.24 7.69 -51.93 -0.40 0.84 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.13 1.63 6.30 -52.48 -0.33 1.30 16 36 H 0.07 1.11 7.65 -51.93 -0.40 0.71 16 37 H 0.06 0.82 7.67 -51.92 -0.40 0.42 16 38 H 0.36 5.31 8.79 45.56 0.40 5.71 16 39 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 40 H 0.11 2.65 5.33 -51.92 -0.28 2.37 16 41 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 43 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 44 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -29.35 380.60 -8.80 -38.14 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.77 Total: 8.60 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.24 Total: -14.71 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.22 Total: -38.08 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.71 Total: -15.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.35 -8.80 -38.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118001754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.334 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds