Wall clock time and date at job start Tue Mar 31 2020 08:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99776 * 2 1 4 4 C 1.50699 * 109.46816 * 125.00728 * 3 2 1 5 5 C 1.38175 * 120.02390 * 265.01642 * 4 3 2 6 6 C 1.38241 * 120.05189 * 179.97438 * 5 4 3 7 7 C 1.38282 * 120.11445 * 0.02976 * 6 5 4 8 8 C 1.38121 * 120.05501 * 359.67564 * 7 6 5 9 9 C 1.38705 * 120.03260 * 85.00181 * 4 3 2 10 10 O 1.35902 * 120.05507 * 0.02562 * 9 4 3 11 11 C 1.42895 * 117.00317 * 180.02562 * 10 9 4 12 12 C 1.52998 * 109.47498 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46897 * 305.00109 * 12 11 10 14 14 O 1.42905 * 109.47092 * 64.99609 * 12 11 10 15 15 C 1.52998 * 109.47473 * 184.99797 * 12 11 10 16 16 N 1.46498 * 109.47503 * 179.97438 * 15 12 11 17 17 C 1.36932 * 120.00341 * 270.00231 * 16 15 12 18 18 H 1.07998 * 120.00457 * 146.01060 * 17 16 15 19 19 C 1.38814 * 119.99882 * 326.02009 * 17 16 15 20 20 N 1.31621 * 119.99646 * 336.65331 * 19 17 16 21 21 Si 1.86798 * 120.00088 * 156.66000 * 19 17 16 22 22 H 1.48498 * 109.47629 * 89.99591 * 21 19 17 23 23 H 1.48506 * 109.47064 * 209.99585 * 21 19 17 24 24 H 1.48505 * 109.47145 * 329.99084 * 21 19 17 25 25 C 1.46501 * 119.99690 * 90.00043 * 16 15 12 26 26 C 1.53002 * 109.47251 * 90.89147 * 25 16 15 27 27 H 1.08000 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99801 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00146 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47086 * 5.00368 * 3 2 1 31 31 H 1.09003 * 109.47049 * 245.00363 * 3 2 1 32 32 H 1.07999 * 119.96961 * 0.02562 * 5 4 3 33 33 H 1.08005 * 119.94366 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.97353 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.03096 * 180.32520 * 8 7 6 36 36 H 1.08999 * 109.47288 * 59.99599 * 11 10 9 37 37 H 1.09009 * 109.47127 * 300.00335 * 11 10 9 38 38 H 0.96702 * 113.99742 * 60.00550 * 14 12 11 39 39 H 1.09002 * 109.47023 * 300.00484 * 15 12 11 40 40 H 1.09008 * 109.47156 * 59.99716 * 15 12 11 41 41 H 0.97008 * 119.99614 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46787 * 210.89148 * 25 16 15 43 43 H 1.09000 * 109.47373 * 330.89062 * 25 16 15 44 44 H 1.09000 * 109.47001 * 59.99687 * 26 25 16 45 45 H 1.08993 * 109.47280 * 180.02562 * 26 25 16 46 46 H 1.09004 * 109.46523 * 299.99897 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0205 1.3326 1.1638 5 6 2.6459 1.9280 2.3530 6 6 3.5232 1.9531 3.4211 7 6 4.7775 1.3832 3.3023 8 6 5.1544 0.7814 2.1176 9 6 4.2779 0.7599 1.0422 10 8 4.6488 0.1738 -0.1266 11 6 5.9581 -0.3960 -0.1798 12 6 6.1940 -1.0039 -1.5638 13 1 5.4003 -1.7167 -1.7877 14 8 6.1931 0.0339 -2.5463 15 6 7.5447 -1.7223 -1.5820 16 7 7.7703 -2.3048 -2.9071 17 6 7.3475 -3.5792 -3.1758 18 1 6.9958 -3.8343 -4.1646 19 6 7.3707 -4.5432 -2.1773 20 7 8.1853 -4.4093 -1.1522 21 14 6.2461 -6.0306 -2.2887 22 1 6.9408 -7.1233 -3.0157 23 1 5.8967 -6.4904 -0.9205 24 1 5.0066 -5.6605 -3.0181 25 6 8.4483 -1.5239 -3.9448 26 6 9.9544 -1.7847 -3.8771 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.6667 2.3735 2.4484 33 1 3.2284 2.4186 4.3501 34 1 5.4612 1.4044 4.1381 35 1 6.1322 0.3318 2.0269 36 1 6.0471 -1.1736 0.5789 37 1 6.7002 0.3803 0.0070 38 1 6.8754 0.7054 -2.4096 39 1 8.3384 -1.0094 -1.3581 40 1 7.5454 -2.5139 -0.8326 41 1 8.2018 -5.0832 -0.4546 42 1 8.0723 -1.8180 -4.9247 43 1 8.2558 -0.4630 -3.7851 44 1 10.1469 -2.8456 -4.0367 45 1 10.4589 -1.2034 -4.6488 46 1 10.3303 -1.4906 -2.8971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118001754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:01 Heat of formation + Delta-G solvation = -47.805101 kcal Electronic energy + Delta-G solvation = -25304.889218 eV Core-core repulsion = 21774.122653 eV Total energy + Delta-G solvation = -3530.766564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27045 -39.31726 -38.06883 -36.58539 -36.05861 -33.76858 -32.41066 -31.94938 -30.91681 -29.99854 -27.47568 -27.14952 -25.42722 -23.56759 -22.76808 -22.22441 -21.85810 -20.67638 -19.21357 -18.58893 -17.52082 -17.39365 -16.88071 -16.73321 -16.31070 -15.97728 -15.67739 -15.63840 -15.45192 -15.12341 -14.83369 -14.48288 -14.16535 -14.05590 -13.86948 -13.51083 -13.31770 -13.14290 -12.87983 -12.80907 -12.49619 -12.41837 -12.32500 -12.16690 -12.06717 -11.97918 -11.88981 -11.85056 -11.57707 -11.52746 -10.93355 -10.56205 -10.24591 -9.77817 -9.05749 -8.59210 -7.85483 -5.41473 0.37253 0.51514 1.41025 1.41504 1.45338 1.54306 2.17902 2.49986 2.82753 3.20288 3.53898 3.65755 3.85222 3.88350 3.99986 4.04957 4.15212 4.24429 4.30597 4.34204 4.45090 4.46217 4.51659 4.52997 4.56616 4.71050 4.76085 4.87322 4.89261 4.94528 5.06624 5.09428 5.14802 5.29358 5.31365 5.43300 5.51961 5.53497 5.60563 5.60708 5.73196 5.73952 5.87437 5.92869 6.42922 6.48731 6.93759 7.14864 7.85493 8.35188 9.09597 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.003840 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.780770 B = 7289.244272 C = 7851.759305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C -0.041 4.041 4 C -0.128 4.128 5 C -0.081 4.081 6 C -0.159 4.159 7 C -0.089 4.089 8 C -0.223 4.223 9 C 0.108 3.892 10 O -0.319 6.319 11 C 0.043 3.957 12 C 0.107 3.893 13 H 0.065 0.935 14 O -0.560 6.560 15 C 0.126 3.874 16 N -0.590 5.590 17 C -0.265 4.265 18 H 0.050 0.950 19 C -0.033 4.033 20 N -0.912 5.912 21 Si 0.946 3.054 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.142 3.858 26 C -0.152 4.152 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.376 0.624 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.252 0.748 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.024 0.976 45 H 0.067 0.933 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 14.952 8.641 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.177 4.177 3 C -0.077 4.077 4 C -0.129 4.129 5 C -0.099 4.099 6 C -0.177 4.177 7 C -0.107 4.107 8 C -0.242 4.242 9 C 0.062 3.938 10 O -0.233 6.233 11 C -0.033 4.033 12 C 0.045 3.955 13 H 0.083 0.917 14 O -0.366 6.366 15 C -0.001 4.001 16 N -0.310 5.310 17 C -0.395 4.395 18 H 0.068 0.932 19 C -0.230 4.230 20 N -0.556 5.556 21 Si 0.774 3.226 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.204 1.204 25 C 0.017 3.983 26 C -0.211 4.211 27 H 0.135 0.865 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.146 0.854 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.224 0.776 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.486 14.470 8.316 19.197 hybrid contribution 0.520 -1.208 0.275 1.344 sum -8.966 13.262 8.591 18.168 Atomic orbital electron populations 1.23983 0.94975 1.02940 1.00277 1.22813 0.96456 0.97760 1.00702 1.19532 0.96435 0.96082 0.95692 1.19391 0.92683 1.02992 0.97827 1.21188 1.00453 0.97263 0.90999 1.21383 0.93973 1.02377 0.99971 1.21267 0.97198 0.95547 0.96651 1.21482 1.00922 1.07011 0.94786 1.19303 0.94430 0.94402 0.85635 1.86147 1.34125 1.70280 1.32705 1.23528 0.82688 0.97636 0.99471 1.22493 1.00114 0.88213 0.84656 0.91702 1.86582 1.59139 1.38351 1.52502 1.21350 0.91734 0.96829 0.90216 1.43830 1.65530 1.11619 1.10059 1.19241 1.35680 0.87174 0.97427 0.93181 1.25582 0.99227 0.99379 0.98808 1.70069 1.36213 1.36092 1.13254 0.85623 0.79779 0.80429 0.76775 1.20886 1.21441 1.20409 1.21001 0.90769 0.94948 0.91597 1.22158 0.98766 0.99968 1.00255 0.86511 0.88011 0.89974 0.88501 0.91554 0.83106 0.83104 0.83670 0.85361 0.91873 0.90195 0.77648 0.93681 0.90283 0.93823 0.94799 0.91864 0.95693 0.91462 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.75 14.32 67.78 0.97 -2.78 16 2 C -0.16 -4.09 9.50 25.65 0.24 -3.84 16 3 C -0.04 -0.99 5.51 29.10 0.16 -0.83 16 4 C -0.13 -3.33 5.13 -19.77 -0.10 -3.43 16 5 C -0.08 -1.65 9.68 22.26 0.22 -1.43 16 6 C -0.16 -2.95 10.04 22.28 0.22 -2.73 16 7 C -0.09 -1.86 10.04 22.25 0.22 -1.63 16 8 C -0.22 -5.87 9.04 22.36 0.20 -5.67 16 9 C 0.11 3.22 6.66 22.50 0.15 3.37 16 10 O -0.32 -10.96 9.24 -87.81 -0.81 -11.77 16 11 C 0.04 1.41 4.37 71.98 0.31 1.73 16 12 C 0.11 4.23 3.52 30.59 0.11 4.34 16 13 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 14 O -0.56 -20.71 12.04 -144.34 -1.74 -22.45 16 15 C 0.13 5.55 4.99 86.38 0.43 5.98 16 16 N -0.59 -28.77 2.37 -701.99 -1.67 -30.44 16 17 C -0.26 -14.55 9.48 84.03 0.80 -13.76 16 18 H 0.05 2.82 7.93 -2.91 -0.02 2.79 16 19 C -0.03 -1.79 4.94 84.86 0.42 -1.37 16 20 N -0.91 -51.54 11.34 21.65 0.25 -51.29 16 21 Si 0.95 44.74 29.61 68.60 2.03 46.78 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 C 0.14 5.86 6.12 86.38 0.53 6.39 16 26 C -0.15 -5.85 10.24 71.98 0.74 -5.11 16 27 H 0.12 1.82 7.84 -2.91 -0.02 1.80 16 28 H 0.10 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.08 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.10 1.80 7.70 -2.39 -0.02 1.78 16 31 H 0.07 1.90 7.69 -2.39 -0.02 1.88 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 35 H 0.13 3.24 6.30 -2.91 -0.02 3.22 16 36 H 0.06 2.12 7.65 -2.39 -0.02 2.11 16 37 H 0.08 2.24 7.67 -2.38 -0.02 2.22 16 38 H 0.38 10.67 8.79 -74.06 -0.65 10.02 16 39 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 40 H 0.08 4.02 5.33 -2.38 -0.01 4.01 16 41 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 42 H 0.03 1.43 8.05 -2.39 -0.02 1.41 16 43 H 0.06 2.27 6.90 -2.39 -0.02 2.26 16 44 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -65.14 380.60 3.98 -61.16 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.30 Total: 28.79 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 5.62 Total: -20.78 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.42 Total: -81.73 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -2.55 Total: -34.22 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.14 3.98 -61.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118001754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.356 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds