Wall clock time and date at job start Tue Mar 31 2020 08:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00259 * 2 1 4 4 C 1.50707 * 109.47104 * 124.99442 * 3 2 1 5 5 C 1.38159 * 120.02781 * 265.01796 * 4 3 2 6 6 C 1.38248 * 120.05703 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.10473 * 359.75385 * 6 5 4 8 8 C 1.38123 * 120.05788 * 0.50184 * 7 6 5 9 9 C 1.38707 * 120.02359 * 84.99992 * 4 3 2 10 10 O 1.35895 * 120.05904 * 0.02562 * 9 4 3 11 11 C 1.42900 * 117.00230 * 180.02562 * 10 9 4 12 12 C 1.52998 * 109.47377 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47244 * 55.00113 * 12 11 10 14 14 O 1.42896 * 109.47519 * 295.00378 * 12 11 10 15 15 C 1.53000 * 109.47197 * 175.00103 * 12 11 10 16 16 N 1.46499 * 109.47139 * 186.22633 * 15 12 11 17 17 C 1.36937 * 119.99978 * 84.38804 * 16 15 12 18 18 H 1.08000 * 120.00135 * 348.47958 * 17 16 15 19 19 C 1.38823 * 119.99696 * 168.47448 * 17 16 15 20 20 N 1.31607 * 119.99980 * 8.69391 * 19 17 16 21 21 Si 1.86804 * 119.99529 * 188.68820 * 19 17 16 22 22 H 1.48498 * 109.47094 * 60.00353 * 21 19 17 23 23 H 1.48502 * 109.46551 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47105 * 300.00336 * 21 19 17 25 25 C 1.46501 * 120.00348 * 264.39079 * 16 15 12 26 26 C 1.52996 * 109.47384 * 263.21437 * 25 16 15 27 27 H 1.08002 * 120.00366 * 180.02562 * 1 2 3 28 28 H 1.08007 * 119.99709 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99282 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.47359 * 4.99981 * 3 2 1 31 31 H 1.08996 * 109.47598 * 244.99524 * 3 2 1 32 32 H 1.08004 * 119.97627 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.94930 * 180.02562 * 6 5 4 34 34 H 1.08005 * 119.96947 * 180.27289 * 7 6 5 35 35 H 1.08000 * 120.02629 * 179.76822 * 8 7 6 36 36 H 1.09000 * 109.47456 * 300.00396 * 11 10 9 37 37 H 1.09005 * 109.47015 * 59.99848 * 11 10 9 38 38 H 0.96706 * 113.99651 * 300.00347 * 14 12 11 39 39 H 1.08994 * 109.47183 * 306.22411 * 15 12 11 40 40 H 1.08999 * 109.47043 * 66.22654 * 15 12 11 41 41 H 0.97007 * 119.99793 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.46481 * 23.20989 * 25 16 15 43 43 H 1.08998 * 109.47485 * 143.20622 * 25 16 15 44 44 H 1.09003 * 109.46820 * 307.30985 * 26 25 16 45 45 H 1.08995 * 109.47683 * 67.30737 * 26 25 16 46 46 H 1.08998 * 109.47549 * 187.31725 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0204 1.3326 1.1640 5 6 2.6458 1.9281 2.3530 6 6 3.5229 1.9533 3.4214 7 6 4.7751 1.3782 3.3044 8 6 5.1563 0.7863 2.1161 9 6 4.2778 0.7597 1.0425 10 8 4.6487 0.1735 -0.1260 11 6 5.9580 -0.3966 -0.1790 12 6 6.1935 -1.0058 -1.5626 13 1 6.0176 -0.2493 -2.3274 14 8 5.2964 -2.1003 -1.7602 15 6 7.6364 -1.5048 -1.6612 16 7 7.9061 -1.9517 -3.0301 17 6 8.2805 -1.0447 -3.9852 18 1 8.1988 0.0137 -3.7864 19 6 8.7654 -1.4857 -5.2090 20 7 8.7064 -2.7635 -5.5184 21 14 9.5014 -0.2652 -6.4166 22 1 10.6672 0.4087 -5.7906 23 1 9.9420 -0.9834 -7.6394 24 1 8.4796 0.7492 -6.7799 25 6 7.7750 -3.3690 -3.3773 26 6 9.1499 -4.0376 -3.3191 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 1.6666 2.3737 2.4484 33 1 3.2281 2.4189 4.3501 34 1 5.4569 1.3953 4.1419 35 1 6.1358 0.3406 2.0242 36 1 6.7001 0.3797 0.0077 37 1 6.0467 -1.1740 0.5798 38 1 5.3967 -2.8126 -1.1139 39 1 8.3192 -0.6958 -1.4021 40 1 7.7810 -2.3370 -0.9723 41 1 9.0449 -3.0716 -6.3737 42 1 7.1040 -3.8558 -2.6695 43 1 7.3689 -3.4603 -4.3846 44 1 9.8551 -3.4717 -3.9279 45 1 9.4990 -4.0616 -2.2868 46 1 9.0754 -5.0556 -3.7013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118001757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:14 Heat of formation + Delta-G solvation = -14.554277 kcal Electronic energy + Delta-G solvation = -25081.744810 eV Core-core repulsion = 21552.420110 eV Total energy + Delta-G solvation = -3529.324700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.31322 -38.06835 -36.76630 -35.20000 -35.14424 -31.61046 -31.30262 -30.41835 -29.77840 -28.56819 -26.40290 -25.64169 -23.52455 -22.21289 -21.85923 -20.98527 -20.18659 -19.77125 -17.99776 -16.94062 -16.34502 -16.10385 -15.96913 -15.29520 -14.95818 -14.82114 -14.55072 -14.33659 -13.88382 -13.60855 -13.43007 -13.25839 -12.95269 -12.79025 -12.37596 -11.96819 -11.92758 -11.65247 -11.55798 -11.22827 -11.17480 -10.96919 -10.95224 -10.84827 -10.64965 -10.52686 -10.30590 -9.90118 -9.79655 -9.64476 -9.36076 -9.34006 -8.93946 -8.30909 -8.13659 -6.79155 -5.59441 -3.11223 1.21226 1.38427 2.30358 3.24227 3.40103 3.45370 3.45796 3.67434 4.48311 4.68269 4.70696 4.85441 4.89191 5.03305 5.05621 5.15036 5.20487 5.27295 5.28741 5.40377 5.45601 5.56466 5.59517 5.72368 5.76641 5.90900 5.93344 5.97426 6.00901 6.26579 6.34636 6.43410 6.45428 6.60608 6.65613 6.68146 6.74559 6.78102 7.04003 7.13022 7.29728 7.47946 7.66460 7.99248 8.13167 8.19427 8.52444 9.30086 9.89496 10.31760 11.30986 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003120 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.138760 B = 8973.180749 C = 9209.284946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.047 4.047 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.164 4.164 7 C -0.084 4.084 8 C -0.211 4.211 9 C 0.139 3.861 10 O -0.298 6.298 11 C 0.028 3.972 12 C 0.086 3.914 13 H 0.105 0.895 14 O -0.543 6.543 15 C 0.129 3.871 16 N -0.591 5.591 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.004 4.004 20 N -0.904 5.904 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.169 3.831 26 C -0.134 4.134 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.359 0.641 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.250 0.750 42 H -0.001 1.001 43 H 0.105 0.895 44 H 0.078 0.922 45 H -0.003 1.003 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 6.002 16.651 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.148 4.148 3 C -0.084 4.084 4 C -0.114 4.114 5 C -0.097 4.097 6 C -0.182 4.182 7 C -0.102 4.102 8 C -0.230 4.230 9 C 0.093 3.907 10 O -0.210 6.210 11 C -0.049 4.049 12 C 0.023 3.977 13 H 0.123 0.877 14 O -0.346 6.346 15 C 0.000 4.000 16 N -0.311 5.311 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.200 4.200 20 N -0.552 5.552 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.045 3.955 26 C -0.193 4.193 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.205 0.795 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.016 0.984 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.561 6.254 15.746 19.965 hybrid contribution 0.941 0.278 0.143 0.992 sum -9.620 6.532 15.889 19.690 Atomic orbital electron populations 1.23764 0.95774 1.01542 1.03291 1.22890 0.95640 0.98457 0.97841 1.19590 0.96384 0.95624 0.96795 1.19130 0.93076 1.02575 0.96665 1.20845 0.99212 0.97924 0.91768 1.20974 0.94720 1.03458 0.99094 1.20916 0.96241 0.96343 0.96742 1.21293 1.00663 1.06768 0.94234 1.18984 0.93118 0.92901 0.85741 1.86231 1.34133 1.69385 1.31297 1.23874 0.82337 0.97426 1.01240 1.23121 0.93087 0.88911 0.92584 0.87680 1.86685 1.60326 1.30710 1.56831 1.21231 0.92118 0.97884 0.88763 1.44029 1.78491 1.04852 1.03741 1.19238 1.35090 0.88712 0.94482 0.91082 1.24830 1.00867 0.96066 0.98255 1.70183 1.50461 1.12431 1.22101 0.86279 0.79312 0.80187 0.80462 1.21282 1.21626 1.21160 1.21054 0.93293 0.80829 1.00370 1.22349 1.02076 0.98555 0.96366 0.88628 0.88860 0.87143 0.90958 0.89316 0.85742 0.86194 0.86076 0.85445 0.91505 0.92308 0.79542 0.93112 0.93599 0.93914 0.98317 0.87717 0.90341 0.98369 0.95972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.12 14.32 29.01 0.42 -1.70 16 2 C -0.13 -1.56 9.50 -36.03 -0.34 -1.90 16 3 C -0.05 -0.56 5.51 -29.03 -0.16 -0.72 16 4 C -0.11 -1.42 5.13 -104.47 -0.54 -1.95 16 5 C -0.08 -0.84 9.68 -39.61 -0.38 -1.22 16 6 C -0.16 -1.62 10.04 -39.56 -0.40 -2.02 16 7 C -0.08 -0.87 10.04 -39.60 -0.40 -1.27 16 8 C -0.21 -2.52 9.04 -39.43 -0.36 -2.87 16 9 C 0.14 1.89 6.66 -39.22 -0.26 1.63 16 10 O -0.30 -4.53 9.24 -24.26 -0.22 -4.75 16 11 C 0.03 0.38 4.37 37.16 0.16 0.55 16 12 C 0.09 1.50 3.45 -26.73 -0.09 1.41 16 13 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 14 O -0.54 -9.97 13.09 -40.08 -0.52 -10.50 16 15 C 0.13 2.46 5.28 -4.04 -0.02 2.44 16 16 N -0.59 -14.28 2.52 -173.24 -0.44 -14.72 16 17 C -0.25 -6.55 9.75 -15.06 -0.15 -6.70 16 18 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 19 C 0.00 -0.11 5.07 -17.43 -0.09 -0.20 16 20 N -0.90 -25.12 7.51 55.49 0.42 -24.71 16 21 Si 0.91 21.60 29.56 -169.99 -5.03 16.58 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 C 0.17 4.11 5.68 -4.04 -0.02 4.09 16 26 C -0.13 -3.16 9.30 37.16 0.35 -2.82 16 27 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.09 0.83 7.84 -52.48 -0.41 0.41 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.07 0.71 7.70 -51.92 -0.40 0.31 16 31 H 0.09 1.18 7.69 -51.93 -0.40 0.78 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 36 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 37 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 38 H 0.36 5.23 9.05 45.56 0.41 5.65 16 39 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.05 0.79 8.03 -51.93 -0.42 0.37 16 41 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.00 -0.03 7.85 -51.93 -0.41 -0.44 16 43 H 0.11 2.91 5.85 -51.93 -0.30 2.61 16 44 H 0.08 2.08 6.13 -51.93 -0.32 1.76 16 45 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -29.76 376.78 -9.12 -38.88 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.72 Total: 6.80 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.28 Total: -13.26 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.02 Total: -39.43 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.75 Total: -15.25 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.76 -9.12 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118001757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.328 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds