Wall clock time and date at job start Tue Mar 31 2020 08:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00259 * 2 1 4 4 C 1.50707 * 109.47104 * 124.99442 * 3 2 1 5 5 C 1.38159 * 120.02781 * 265.01796 * 4 3 2 6 6 C 1.38248 * 120.05703 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.10473 * 359.75385 * 6 5 4 8 8 C 1.38123 * 120.05788 * 0.50184 * 7 6 5 9 9 C 1.38707 * 120.02359 * 84.99992 * 4 3 2 10 10 O 1.35895 * 120.05904 * 0.02562 * 9 4 3 11 11 C 1.42900 * 117.00230 * 180.02562 * 10 9 4 12 12 C 1.52998 * 109.47377 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47244 * 55.00113 * 12 11 10 14 14 O 1.42896 * 109.47519 * 295.00378 * 12 11 10 15 15 C 1.53000 * 109.47197 * 175.00103 * 12 11 10 16 16 N 1.46499 * 109.47139 * 186.22633 * 15 12 11 17 17 C 1.36937 * 119.99978 * 84.38804 * 16 15 12 18 18 H 1.08000 * 120.00135 * 348.47958 * 17 16 15 19 19 C 1.38823 * 119.99696 * 168.47448 * 17 16 15 20 20 N 1.31607 * 119.99980 * 8.69391 * 19 17 16 21 21 Si 1.86804 * 119.99529 * 188.68820 * 19 17 16 22 22 H 1.48498 * 109.47094 * 60.00353 * 21 19 17 23 23 H 1.48502 * 109.46551 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47105 * 300.00336 * 21 19 17 25 25 C 1.46501 * 120.00348 * 264.39079 * 16 15 12 26 26 C 1.52996 * 109.47384 * 263.21437 * 25 16 15 27 27 H 1.08002 * 120.00366 * 180.02562 * 1 2 3 28 28 H 1.08007 * 119.99709 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99282 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.47359 * 4.99981 * 3 2 1 31 31 H 1.08996 * 109.47598 * 244.99524 * 3 2 1 32 32 H 1.08004 * 119.97627 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.94930 * 180.02562 * 6 5 4 34 34 H 1.08005 * 119.96947 * 180.27289 * 7 6 5 35 35 H 1.08000 * 120.02629 * 179.76822 * 8 7 6 36 36 H 1.09000 * 109.47456 * 300.00396 * 11 10 9 37 37 H 1.09005 * 109.47015 * 59.99848 * 11 10 9 38 38 H 0.96706 * 113.99651 * 300.00347 * 14 12 11 39 39 H 1.08994 * 109.47183 * 306.22411 * 15 12 11 40 40 H 1.08999 * 109.47043 * 66.22654 * 15 12 11 41 41 H 0.97007 * 119.99793 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.46481 * 23.20989 * 25 16 15 43 43 H 1.08998 * 109.47485 * 143.20622 * 25 16 15 44 44 H 1.09003 * 109.46820 * 307.30985 * 26 25 16 45 45 H 1.08995 * 109.47683 * 67.30737 * 26 25 16 46 46 H 1.08998 * 109.47549 * 187.31725 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0204 1.3326 1.1640 5 6 2.6458 1.9281 2.3530 6 6 3.5229 1.9533 3.4214 7 6 4.7751 1.3782 3.3044 8 6 5.1563 0.7863 2.1161 9 6 4.2778 0.7597 1.0425 10 8 4.6487 0.1735 -0.1260 11 6 5.9580 -0.3966 -0.1790 12 6 6.1935 -1.0058 -1.5626 13 1 6.0176 -0.2493 -2.3274 14 8 5.2964 -2.1003 -1.7602 15 6 7.6364 -1.5048 -1.6612 16 7 7.9061 -1.9517 -3.0301 17 6 8.2805 -1.0447 -3.9852 18 1 8.1988 0.0137 -3.7864 19 6 8.7654 -1.4857 -5.2090 20 7 8.7064 -2.7635 -5.5184 21 14 9.5014 -0.2652 -6.4166 22 1 10.6672 0.4087 -5.7906 23 1 9.9420 -0.9834 -7.6394 24 1 8.4796 0.7492 -6.7799 25 6 7.7750 -3.3690 -3.3773 26 6 9.1499 -4.0376 -3.3191 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 1.6666 2.3737 2.4484 33 1 3.2281 2.4189 4.3501 34 1 5.4569 1.3953 4.1419 35 1 6.1358 0.3406 2.0242 36 1 6.7001 0.3797 0.0077 37 1 6.0467 -1.1740 0.5798 38 1 5.3967 -2.8126 -1.1139 39 1 8.3192 -0.6958 -1.4021 40 1 7.7810 -2.3370 -0.9723 41 1 9.0449 -3.0716 -6.3737 42 1 7.1040 -3.8558 -2.6695 43 1 7.3689 -3.4603 -4.3846 44 1 9.8551 -3.4717 -3.9279 45 1 9.4990 -4.0616 -2.2868 46 1 9.0754 -5.0556 -3.7013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118001757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:11 Heat of formation + Delta-G solvation = -31.041712 kcal Electronic energy + Delta-G solvation = -25082.459759 eV Core-core repulsion = 21552.420110 eV Total energy + Delta-G solvation = -3530.039649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.26027 -39.31656 -38.09133 -36.83912 -36.04289 -33.34109 -32.28644 -31.86873 -31.01102 -30.08533 -27.38583 -27.10233 -25.22653 -23.50437 -22.76273 -22.23696 -21.93476 -20.66026 -19.07809 -18.62577 -17.69254 -17.32649 -16.92765 -16.75132 -16.39094 -15.81373 -15.65231 -15.50446 -15.41405 -15.06733 -14.76258 -14.40729 -14.11803 -13.85802 -13.78148 -13.37723 -13.29964 -13.10021 -12.80491 -12.71234 -12.49028 -12.41845 -12.39380 -12.08931 -12.00391 -11.89010 -11.80357 -11.64198 -11.57048 -11.43084 -11.02523 -10.29874 -10.22692 -9.76294 -9.04201 -8.70947 -7.63088 -5.14699 0.38834 0.52935 1.43791 1.49047 1.49480 1.55885 2.19788 2.55083 2.84233 3.36401 3.56764 3.63108 3.86209 3.89207 4.02922 4.04102 4.17011 4.25499 4.28773 4.33307 4.41809 4.47216 4.49702 4.55250 4.71573 4.76964 4.78982 4.93817 4.95113 5.08122 5.12617 5.15549 5.20054 5.28562 5.38436 5.43914 5.53393 5.59673 5.62356 5.75259 5.89301 5.93755 5.98296 6.18169 6.50193 6.52252 6.94818 7.27242 7.97881 8.34619 9.25129 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003120 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.138760 B = 8973.180749 C = 9209.284946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C -0.043 4.043 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.161 4.161 7 C -0.088 4.088 8 C -0.220 4.220 9 C 0.109 3.891 10 O -0.322 6.322 11 C 0.040 3.960 12 C 0.099 3.901 13 H 0.068 0.932 14 O -0.565 6.565 15 C 0.128 3.872 16 N -0.608 5.608 17 C -0.255 4.255 18 H 0.071 0.929 19 C -0.055 4.055 20 N -0.922 5.922 21 Si 0.963 3.037 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.285 1.285 25 C 0.173 3.827 26 C -0.120 4.120 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.377 0.623 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.242 0.758 42 H 0.019 0.981 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 7.040 19.404 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.173 4.173 3 C -0.079 4.079 4 C -0.131 4.131 5 C -0.101 4.101 6 C -0.179 4.179 7 C -0.106 4.106 8 C -0.238 4.238 9 C 0.064 3.936 10 O -0.236 6.236 11 C -0.036 4.036 12 C 0.037 3.963 13 H 0.086 0.914 14 O -0.370 6.370 15 C 0.001 3.999 16 N -0.329 5.329 17 C -0.385 4.385 18 H 0.089 0.911 19 C -0.248 4.248 20 N -0.571 5.571 21 Si 0.793 3.207 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.211 1.211 25 C 0.049 3.951 26 C -0.180 4.180 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.303 7.303 18.546 22.914 hybrid contribution 1.042 -0.023 -0.595 1.200 sum -10.261 7.280 17.951 21.921 Atomic orbital electron populations 1.23981 0.95104 1.02857 1.00574 1.22801 0.96324 0.97757 1.00399 1.19531 0.96489 0.96264 0.95664 1.19375 0.92964 1.03105 0.97631 1.21159 1.00414 0.97336 0.91147 1.21381 0.94233 1.02379 0.99875 1.21284 0.96990 0.95501 0.96837 1.21494 1.00831 1.07106 0.94408 1.19259 0.94270 0.94368 0.85706 1.86162 1.34371 1.70242 1.32795 1.23606 0.82631 0.98284 0.99124 1.22670 0.91805 0.88105 0.93762 0.91394 1.86636 1.60643 1.31662 1.58098 1.21413 0.92863 0.99019 0.86642 1.44185 1.78965 1.04439 1.05339 1.19516 1.34434 0.89274 0.95240 0.91070 1.25483 1.01900 0.97539 0.99920 1.70403 1.51219 1.13580 1.21918 0.85393 0.78581 0.78321 0.78414 1.20654 1.22196 1.21101 1.20823 0.93849 0.81599 0.98852 1.22138 1.00806 0.98256 0.96777 0.87776 0.86977 0.89280 0.88955 0.91912 0.83499 0.83323 0.83508 0.84606 0.90360 0.90022 0.77571 0.92307 0.91154 0.94797 0.96260 0.91530 0.93505 0.96499 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.58 14.32 67.78 0.97 -2.61 16 2 C -0.15 -3.69 9.50 25.64 0.24 -3.44 16 3 C -0.04 -1.00 5.51 29.10 0.16 -0.84 16 4 C -0.13 -3.14 5.13 -19.77 -0.10 -3.24 16 5 C -0.08 -1.55 9.68 22.25 0.22 -1.34 16 6 C -0.16 -2.66 10.04 22.28 0.22 -2.44 16 7 C -0.09 -1.57 10.04 22.25 0.22 -1.35 16 8 C -0.22 -4.87 9.04 22.37 0.20 -4.67 16 9 C 0.11 2.92 6.66 22.50 0.15 3.07 16 10 O -0.32 -9.92 9.24 -87.73 -0.81 -10.73 16 11 C 0.04 1.07 4.37 71.98 0.31 1.39 16 12 C 0.10 3.46 3.45 30.59 0.11 3.57 16 13 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 14 O -0.56 -20.82 13.09 -144.35 -1.89 -22.71 16 15 C 0.13 4.75 5.28 86.38 0.46 5.21 16 16 N -0.61 -29.50 2.52 -702.00 -1.77 -31.27 16 17 C -0.25 -13.75 9.75 84.04 0.82 -12.93 16 18 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 19 C -0.05 -3.02 5.07 84.87 0.43 -2.59 16 20 N -0.92 -52.64 7.51 21.65 0.16 -52.48 16 21 Si 0.96 45.25 29.56 68.60 2.03 47.27 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 C 0.17 8.48 5.68 86.38 0.49 8.98 16 26 C -0.12 -5.64 9.30 71.98 0.67 -4.97 16 27 H 0.10 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.11 1.70 7.84 -2.91 -0.02 1.67 16 29 H 0.09 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.09 1.71 7.70 -2.38 -0.02 1.69 16 31 H 0.06 1.77 7.69 -2.39 -0.02 1.75 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 35 H 0.14 2.64 6.30 -2.91 -0.02 2.62 16 36 H 0.08 1.92 7.66 -2.39 -0.02 1.90 16 37 H 0.08 1.83 7.66 -2.38 -0.02 1.81 16 38 H 0.38 10.63 9.05 -74.05 -0.67 9.96 16 39 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 40 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 41 H 0.24 13.63 8.31 -92.70 -0.77 12.86 16 42 H 0.02 0.84 7.85 -2.38 -0.02 0.83 16 43 H 0.07 3.80 5.85 -2.39 -0.01 3.79 16 44 H 0.05 2.50 6.13 -2.39 -0.01 2.48 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -65.92 376.78 3.58 -62.34 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.28 Total: 25.78 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 5.57 Total: -18.21 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.61 Total: -83.74 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -2.70 Total: -33.44 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.92 3.58 -62.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118001757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.295 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds