Wall clock time and date at job start Tue Mar 31 2020 10:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45204 * 109.46948 * 2 1 4 4 C 1.34222 * 116.99892 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00258 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00185 * 180.02562 * 4 3 2 7 7 N 1.46896 * 109.47450 * 188.79410 * 6 4 3 8 8 C 1.46903 * 111.00071 * 201.25476 * 7 6 4 9 9 C 1.52999 * 109.47056 * 149.14649 * 8 7 6 10 10 C 1.50697 * 109.47007 * 183.22113 * 9 8 7 11 11 H 1.07993 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00097 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99767 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00140 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47107 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47091 * 119.99973 * 14 12 10 17 17 H 1.48498 * 109.47046 * 239.99826 * 14 12 10 18 18 C 1.46902 * 111.00188 * 77.30102 * 7 6 4 19 19 H 1.08997 * 109.47168 * 38.35209 * 18 7 6 20 20 C 1.52993 * 109.47319 * 158.35450 * 18 7 6 21 21 C 1.50708 * 109.46948 * 278.35357 * 18 7 6 22 22 C 1.38237 * 119.99691 * 304.53730 * 21 18 7 23 23 C 1.38231 * 119.99779 * 179.81127 * 22 21 18 24 24 C 1.38241 * 120.00021 * 0.39551 * 23 22 21 25 25 C 1.38231 * 119.99619 * 359.85423 * 24 23 22 26 26 C 1.38230 * 120.00395 * 359.95667 * 25 24 23 27 27 H 1.09003 * 109.47545 * 300.00290 * 1 2 3 28 28 H 1.09005 * 109.46945 * 60.00150 * 1 2 3 29 29 H 1.08994 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47123 * 240.00264 * 2 1 3 31 31 H 1.08995 * 109.46968 * 119.99731 * 2 1 3 32 32 H 1.08999 * 109.47326 * 68.78807 * 6 4 3 33 33 H 1.09002 * 109.46958 * 308.79576 * 6 4 3 34 34 H 1.08994 * 109.47006 * 29.14616 * 8 7 6 35 35 H 1.09000 * 109.46984 * 269.14307 * 8 7 6 36 36 H 1.09001 * 109.47252 * 303.22501 * 9 8 7 37 37 H 1.09005 * 109.47037 * 63.22441 * 9 8 7 38 38 H 0.97007 * 119.99717 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47108 * 60.78637 * 20 18 7 40 40 H 1.09003 * 109.47228 * 180.78454 * 20 18 7 41 41 H 1.09005 * 109.47381 * 300.78353 * 20 18 7 42 42 H 1.08001 * 120.00281 * 0.02562 * 22 21 18 43 43 H 1.07998 * 120.00263 * 180.23124 * 23 22 21 44 44 H 1.08002 * 120.00211 * 179.84083 * 24 23 22 45 45 H 1.08007 * 119.99861 * 179.97438 * 25 24 23 46 46 H 1.08008 * 119.99820 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 7 5.3726 2.8669 -0.2101 8 6 6.0345 4.0869 0.2711 9 6 7.4434 3.7441 0.7593 10 6 8.0934 4.9801 1.3257 11 1 7.5553 5.9163 1.3368 12 6 9.3751 4.9156 1.8298 13 7 10.0302 3.7753 1.8168 14 14 10.1806 6.4476 2.5326 15 1 9.2395 7.5919 2.4324 16 1 10.5267 6.2153 3.9579 17 1 11.4156 6.7531 1.7667 18 6 5.6877 2.6196 -1.6234 19 1 4.9937 3.1763 -2.2532 20 6 7.1187 3.0758 -1.9144 21 6 5.5607 1.1467 -1.9161 22 6 6.2773 0.2296 -1.1702 23 6 6.1578 -1.1217 -1.4360 24 6 5.3281 -1.5553 -2.4532 25 6 4.6156 -0.6379 -3.2023 26 6 4.7320 0.7131 -2.9340 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7156 3.4151 0.9592 33 1 3.4648 3.5196 -0.7998 34 1 5.4588 4.5126 1.0929 35 1 6.0977 4.8106 -0.5415 36 1 7.3837 2.9781 1.5325 37 1 8.0368 3.3718 -0.0758 38 1 10.9318 3.7298 2.1718 39 1 7.8138 2.5093 -1.2947 40 1 7.3477 2.9052 -2.9664 41 1 7.2143 4.1382 -1.6895 42 1 6.9278 0.5685 -0.3775 43 1 6.7148 -1.8385 -0.8509 44 1 5.2368 -2.6109 -2.6626 45 1 3.9676 -0.9766 -3.9973 46 1 4.1755 1.4300 -3.5197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119082902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:49 Heat of formation + Delta-G solvation = -40.117339 kcal Electronic energy + Delta-G solvation = -26220.226511 eV Core-core repulsion = 22689.793313 eV Total energy + Delta-G solvation = -3530.433198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36421 -39.07662 -37.39764 -36.09379 -33.15757 -32.20723 -31.65863 -30.55869 -30.30283 -28.50989 -26.59407 -24.59978 -23.18928 -22.51385 -22.07565 -20.86091 -20.58566 -19.42419 -17.37357 -16.77819 -16.43281 -16.36644 -16.03522 -15.40056 -14.94936 -14.64294 -14.43644 -14.09958 -13.85834 -13.44403 -13.16658 -12.91649 -12.88819 -12.58100 -12.38475 -12.29399 -12.07063 -11.74091 -11.66228 -11.54858 -11.29911 -11.10232 -10.93847 -10.89570 -10.68340 -10.53730 -10.38870 -10.35318 -10.06785 -9.70286 -9.42279 -8.94969 -8.43569 -8.26329 -8.09428 -7.84162 -5.97926 -3.99586 1.78755 1.91613 2.62401 2.78280 3.31461 3.39498 3.42350 4.14637 4.39402 4.52020 4.85214 4.86143 5.00342 5.09664 5.21540 5.22443 5.32316 5.34114 5.38183 5.42750 5.47858 5.60193 5.63735 5.67266 5.72679 5.83380 5.88450 6.05131 6.08047 6.16916 6.22203 6.39315 6.51244 6.56986 6.67874 6.81604 6.85288 6.95475 7.01838 7.11095 7.39277 7.46192 7.51299 7.79183 7.95247 8.12000 8.18779 8.44267 9.08024 9.63368 11.13051 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.004110 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.183848 B = 6810.428491 C = 7746.238481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.370 6.370 4 C 0.447 3.553 5 O -0.461 6.461 6 C 0.065 3.935 7 N -0.517 5.517 8 C 0.063 3.937 9 C 0.015 3.985 10 C -0.521 4.521 11 H 0.052 0.948 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.122 3.878 19 H 0.042 0.958 20 C -0.157 4.157 21 C -0.054 4.054 22 C -0.042 4.042 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.133 4.133 26 C -0.130 4.130 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.023 0.977 37 H 0.041 0.959 38 H 0.259 0.741 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.028 -7.442 -8.224 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.008 4.008 3 O -0.288 6.288 4 C 0.287 3.713 5 O -0.344 6.344 6 C -0.064 4.064 7 N -0.243 5.243 8 C -0.062 4.062 9 C -0.023 4.023 10 C -0.560 4.560 11 H 0.071 0.929 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.717 3.283 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.211 1.211 18 C 0.014 3.986 19 H 0.060 0.940 20 C -0.213 4.213 21 C -0.055 4.055 22 C -0.060 4.060 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.151 4.151 26 C -0.149 4.149 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.143 0.857 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.464 -8.225 -7.896 19.212 hybrid contribution 0.070 1.236 0.055 1.240 sum -15.394 -6.989 -7.840 18.636 Atomic orbital electron populations 1.21787 0.93187 1.02580 1.03237 1.22857 0.94736 0.80860 1.02355 1.86463 1.25504 1.31809 1.85070 1.23789 0.80064 0.93402 0.74050 1.90755 1.59360 1.42453 1.41799 1.21662 0.90471 0.90178 1.04094 1.61776 1.04813 1.39975 1.17714 1.22537 0.98781 0.87315 0.97585 1.19547 0.88218 0.96863 0.97630 1.21230 0.99280 0.95598 1.39925 0.92933 1.24956 0.97370 0.95780 0.96071 1.69980 1.12046 1.24569 1.46408 0.86600 0.79397 0.83532 0.78816 1.19854 1.21103 1.21097 1.20667 0.97994 0.91965 0.87983 0.94016 1.22421 0.94868 1.03275 1.00768 1.19683 0.95967 0.94896 0.94950 1.20862 0.96526 0.91988 0.96632 1.21037 0.99202 0.96006 0.97770 1.20928 0.98092 0.98553 0.96974 1.20817 1.00775 0.93267 1.00278 1.20865 0.99854 0.95532 0.98624 0.91650 0.91735 0.90614 0.91540 0.91614 0.87026 0.91573 0.92340 0.94644 0.95903 0.94062 0.93111 0.89458 0.93307 0.90564 0.85655 0.86998 0.87362 0.87398 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.07 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -5.03 10.22 -39.24 -0.40 -5.43 16 4 C 0.45 6.87 7.32 36.01 0.26 7.13 16 5 O -0.46 -8.12 11.43 -18.75 -0.21 -8.33 16 6 C 0.07 0.96 5.60 -4.98 -0.03 0.93 16 7 N -0.52 -9.00 3.72 -229.48 -0.85 -9.85 16 8 C 0.06 1.23 4.56 -3.82 -0.02 1.21 16 9 C 0.01 0.36 4.67 -27.89 -0.13 0.23 16 10 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 11 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.12 1.98 2.36 -68.86 -0.16 1.82 16 19 H 0.04 0.62 7.33 -51.93 -0.38 0.24 16 20 C -0.16 -2.71 7.33 37.15 0.27 -2.44 16 21 C -0.05 -0.88 2.55 -104.62 -0.27 -1.15 16 22 C -0.04 -0.73 6.84 -39.58 -0.27 -1.00 16 23 C -0.12 -1.91 9.94 -39.58 -0.39 -2.30 16 24 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 25 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 26 C -0.13 -1.91 9.43 -39.59 -0.37 -2.28 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 32 H 0.11 1.51 7.47 -51.93 -0.39 1.12 16 33 H 0.07 0.84 7.63 -51.93 -0.40 0.44 16 34 H 0.06 1.10 7.37 -51.93 -0.38 0.72 16 35 H 0.04 0.66 6.37 -51.93 -0.33 0.33 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.04 1.04 4.28 -51.93 -0.22 0.82 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.09 1.74 5.61 -51.93 -0.29 1.45 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.39 5.58 -51.93 -0.29 1.10 16 42 H 0.13 2.46 7.85 -52.49 -0.41 2.05 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.11 1.22 8.06 -52.48 -0.42 0.79 16 46 H 0.11 1.38 7.95 -52.48 -0.42 0.96 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -30.56 365.90 -9.22 -39.78 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.28 Total: 2.58 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.70 Total: -15.02 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.12 Total: -35.36 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.62 Total: -13.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.56 -9.22 -39.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119082902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.338 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds