Wall clock time and date at job start Tue Mar 31 2020 10:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45204 * 109.46948 * 2 1 4 4 C 1.34222 * 116.99892 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00258 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00185 * 180.02562 * 4 3 2 7 7 N 1.46896 * 109.47450 * 188.79410 * 6 4 3 8 8 C 1.46903 * 111.00071 * 201.25476 * 7 6 4 9 9 C 1.52999 * 109.47056 * 149.14649 * 8 7 6 10 10 C 1.50697 * 109.47007 * 183.22113 * 9 8 7 11 11 H 1.07993 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00097 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99767 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00140 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47107 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47091 * 119.99973 * 14 12 10 17 17 H 1.48498 * 109.47046 * 239.99826 * 14 12 10 18 18 C 1.46902 * 111.00188 * 77.30102 * 7 6 4 19 19 H 1.08997 * 109.47168 * 38.35209 * 18 7 6 20 20 C 1.52993 * 109.47319 * 158.35450 * 18 7 6 21 21 C 1.50708 * 109.46948 * 278.35357 * 18 7 6 22 22 C 1.38237 * 119.99691 * 304.53730 * 21 18 7 23 23 C 1.38231 * 119.99779 * 179.81127 * 22 21 18 24 24 C 1.38241 * 120.00021 * 0.39551 * 23 22 21 25 25 C 1.38231 * 119.99619 * 359.85423 * 24 23 22 26 26 C 1.38230 * 120.00395 * 359.95667 * 25 24 23 27 27 H 1.09003 * 109.47545 * 300.00290 * 1 2 3 28 28 H 1.09005 * 109.46945 * 60.00150 * 1 2 3 29 29 H 1.08994 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47123 * 240.00264 * 2 1 3 31 31 H 1.08995 * 109.46968 * 119.99731 * 2 1 3 32 32 H 1.08999 * 109.47326 * 68.78807 * 6 4 3 33 33 H 1.09002 * 109.46958 * 308.79576 * 6 4 3 34 34 H 1.08994 * 109.47006 * 29.14616 * 8 7 6 35 35 H 1.09000 * 109.46984 * 269.14307 * 8 7 6 36 36 H 1.09001 * 109.47252 * 303.22501 * 9 8 7 37 37 H 1.09005 * 109.47037 * 63.22441 * 9 8 7 38 38 H 0.97007 * 119.99717 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.47108 * 60.78637 * 20 18 7 40 40 H 1.09003 * 109.47228 * 180.78454 * 20 18 7 41 41 H 1.09005 * 109.47381 * 300.78353 * 20 18 7 42 42 H 1.08001 * 120.00281 * 0.02562 * 22 21 18 43 43 H 1.07998 * 120.00263 * 180.23124 * 23 22 21 44 44 H 1.08002 * 120.00211 * 179.84083 * 24 23 22 45 45 H 1.08007 * 119.99861 * 179.97438 * 25 24 23 46 46 H 1.08008 * 119.99820 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 7 5.3726 2.8669 -0.2101 8 6 6.0345 4.0869 0.2711 9 6 7.4434 3.7441 0.7593 10 6 8.0934 4.9801 1.3257 11 1 7.5553 5.9163 1.3368 12 6 9.3751 4.9156 1.8298 13 7 10.0302 3.7753 1.8168 14 14 10.1806 6.4476 2.5326 15 1 9.2395 7.5919 2.4324 16 1 10.5267 6.2153 3.9579 17 1 11.4156 6.7531 1.7667 18 6 5.6877 2.6196 -1.6234 19 1 4.9937 3.1763 -2.2532 20 6 7.1187 3.0758 -1.9144 21 6 5.5607 1.1467 -1.9161 22 6 6.2773 0.2296 -1.1702 23 6 6.1578 -1.1217 -1.4360 24 6 5.3281 -1.5553 -2.4532 25 6 4.6156 -0.6379 -3.2023 26 6 4.7320 0.7131 -2.9340 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7156 3.4151 0.9592 33 1 3.4648 3.5196 -0.7998 34 1 5.4588 4.5126 1.0929 35 1 6.0977 4.8106 -0.5415 36 1 7.3837 2.9781 1.5325 37 1 8.0368 3.3718 -0.0758 38 1 10.9318 3.7298 2.1718 39 1 7.8138 2.5093 -1.2947 40 1 7.3477 2.9052 -2.9664 41 1 7.2143 4.1382 -1.6895 42 1 6.9278 0.5685 -0.3775 43 1 6.7148 -1.8385 -0.8509 44 1 5.2368 -2.6109 -2.6626 45 1 3.9676 -0.9766 -3.9973 46 1 4.1755 1.4300 -3.5197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119082902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:48 Heat of formation + Delta-G solvation = -56.304027 kcal Electronic energy + Delta-G solvation = -26220.928419 eV Core-core repulsion = 22689.793313 eV Total energy + Delta-G solvation = -3531.135105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55470 -40.26984 -38.68627 -37.27354 -35.16585 -33.41147 -32.69233 -32.02577 -31.58548 -29.91960 -28.02508 -26.31700 -24.23987 -23.76297 -23.32545 -22.29477 -21.91649 -20.73757 -18.53290 -18.41859 -17.95192 -17.48059 -17.35880 -16.62579 -16.44360 -16.13279 -15.87001 -15.37892 -15.02901 -14.66000 -14.34731 -14.20864 -14.07042 -13.90430 -13.62646 -13.59472 -13.44268 -13.17939 -12.94500 -12.77904 -12.65538 -12.54707 -12.44465 -12.38584 -12.30495 -11.86428 -11.76432 -11.51189 -11.40243 -11.38003 -11.10010 -10.93585 -10.38028 -9.60742 -9.28893 -9.18601 -8.12899 -6.22087 0.61897 0.73830 1.41904 1.42671 1.45204 1.54884 1.71056 2.44213 2.92975 3.20109 3.21194 3.83688 3.91525 4.04349 4.05166 4.16543 4.17657 4.24727 4.29669 4.32279 4.40044 4.41316 4.43116 4.57072 4.64377 4.72830 4.79173 4.88953 4.90352 4.96043 5.05010 5.18519 5.21300 5.27434 5.32600 5.35864 5.59603 5.61527 5.69593 5.73160 5.79116 5.90081 5.96226 6.16864 6.24418 6.31831 6.39139 6.97309 7.04528 7.45674 8.98833 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.004110 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.183848 B = 6810.428491 C = 7746.238481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.448 3.552 5 O -0.488 6.488 6 C 0.064 3.936 7 N -0.537 5.537 8 C 0.081 3.919 9 C 0.022 3.978 10 C -0.535 4.535 11 H 0.061 0.939 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.959 3.041 15 H -0.259 1.259 16 H -0.284 1.284 17 H -0.281 1.281 18 C 0.125 3.875 19 H 0.067 0.933 20 C -0.147 4.147 21 C -0.061 4.061 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.132 4.132 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.048 0.952 36 H -0.022 1.022 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.606 -6.776 -9.805 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.013 4.013 3 O -0.286 6.286 4 C 0.289 3.711 5 O -0.373 6.373 6 C -0.065 4.065 7 N -0.263 5.263 8 C -0.045 4.045 9 C -0.016 4.016 10 C -0.573 4.573 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.784 3.216 15 H -0.183 1.183 16 H -0.210 1.210 17 H -0.207 1.207 18 C 0.018 3.982 19 H 0.085 0.915 20 C -0.204 4.204 21 C -0.062 4.062 22 C -0.083 4.083 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.066 0.934 36 H -0.004 1.004 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.154 0.846 45 H 0.159 0.841 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.077 -7.550 -9.482 21.764 hybrid contribution 0.822 0.915 0.532 1.341 sum -17.255 -6.635 -8.950 20.539 Atomic orbital electron populations 1.21794 0.90435 1.04117 1.03634 1.23091 0.96807 0.79642 1.01740 1.86461 1.24298 1.33199 1.84596 1.23893 0.80516 0.93296 0.73348 1.90769 1.60101 1.43323 1.43151 1.21736 0.88559 0.90444 1.05749 1.61516 1.06918 1.38994 1.18827 1.22120 0.95923 0.88305 0.98147 1.19399 0.91614 0.94775 0.95787 1.21693 0.99623 0.96588 1.39434 0.92065 1.25880 0.98237 0.98912 0.96589 1.70136 1.12427 1.27012 1.47695 0.85489 0.78455 0.79863 0.77750 1.18329 1.21002 1.20682 1.20683 0.97335 0.92559 0.87663 0.91536 1.22254 0.95285 1.01786 1.01078 1.19657 0.96505 0.94387 0.95604 1.20637 0.97418 0.93393 0.96811 1.21178 1.00077 0.95331 0.98819 1.21236 0.97038 1.00233 0.95925 1.21217 1.00270 0.92744 1.00392 1.21125 0.99273 0.96669 0.97977 0.91426 0.91113 0.88509 0.91950 0.92527 0.85999 0.88639 0.91683 0.93433 1.00375 0.95366 0.93143 0.93189 0.91466 0.91638 0.89726 0.86739 0.84630 0.84132 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.06 1.28 6.19 71.98 0.45 1.73 16 3 O -0.37 -9.34 10.22 -51.34 -0.52 -9.86 16 4 C 0.45 13.35 7.32 71.24 0.52 13.87 16 5 O -0.49 -17.31 11.43 21.97 0.25 -17.06 16 6 C 0.06 1.77 5.60 85.56 0.48 2.25 16 7 N -0.54 -18.83 3.72 -879.93 -3.28 -22.10 16 8 C 0.08 3.19 4.56 86.30 0.39 3.58 16 9 C 0.02 1.12 4.67 29.85 0.14 1.26 16 10 C -0.53 -29.70 9.11 25.60 0.23 -29.47 16 11 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 12 C 0.00 0.08 5.46 84.65 0.46 0.54 16 13 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 14 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 C 0.13 4.03 2.36 44.17 0.10 4.13 16 19 H 0.07 1.81 7.33 -2.39 -0.02 1.79 16 20 C -0.15 -5.25 7.33 71.98 0.53 -4.72 16 21 C -0.06 -1.97 2.55 -19.86 -0.05 -2.02 16 22 C -0.06 -2.35 6.84 22.27 0.15 -2.20 16 23 C -0.14 -4.35 9.94 22.27 0.22 -4.13 16 24 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 25 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 26 C -0.13 -3.55 9.43 22.27 0.21 -3.34 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.12 3.12 7.47 -2.39 -0.02 3.10 16 33 H 0.10 2.12 7.63 -2.39 -0.02 2.10 16 34 H 0.06 2.44 7.37 -2.39 -0.02 2.42 16 35 H 0.05 1.75 6.37 -2.39 -0.02 1.73 16 36 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 37 H 0.03 1.54 4.28 -2.38 -0.01 1.52 16 38 H 0.26 15.07 8.31 -92.70 -0.77 14.29 16 39 H 0.05 2.15 5.61 -2.39 -0.01 2.14 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.43 5.58 -2.38 -0.01 2.42 16 42 H 0.08 3.72 7.85 -2.91 -0.02 3.70 16 43 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 46 H 0.13 2.85 7.95 -2.91 -0.02 2.83 16 Total: -1.00 -69.10 365.90 4.74 -64.36 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.95 Total: 21.07 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 5.03 Total: -25.72 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -2.99 Total: -79.01 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.27 Total: -26.93 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.10 4.74 -64.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119082902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.051 kcal (2) G-P(sol) polarization free energy of solvation -69.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds