Wall clock time and date at job start Tue Mar 31 2020 10:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45195 * 109.47643 * 2 1 4 4 C 1.34228 * 117.00251 * 184.79203 * 3 2 1 5 5 O 1.20827 * 120.00096 * 5.13882 * 4 3 2 6 6 C 1.50696 * 120.00313 * 185.14231 * 4 3 2 7 7 N 1.46893 * 109.47681 * 187.03012 * 6 4 3 8 8 C 1.46898 * 111.00488 * 208.87736 * 7 6 4 9 9 C 1.53003 * 109.47055 * 158.43014 * 8 7 6 10 10 C 1.50704 * 109.47025 * 184.89852 * 9 8 7 11 11 H 1.08005 * 119.99642 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00135 * 180.02562 * 10 9 8 13 13 N 1.31521 * 120.00090 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00171 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47084 * 89.99804 * 14 12 10 16 16 H 1.48499 * 109.47007 * 209.99694 * 14 12 10 17 17 H 1.48496 * 109.47077 * 329.99872 * 14 12 10 18 18 C 1.46908 * 111.00052 * 84.92549 * 7 6 4 19 19 H 1.08992 * 109.47012 * 77.67572 * 18 7 6 20 20 C 1.53006 * 109.47025 * 317.67955 * 18 7 6 21 21 C 1.50700 * 109.47330 * 197.68014 * 18 7 6 22 22 C 1.38229 * 120.00285 * 225.28114 * 21 18 7 23 23 C 1.38230 * 120.00559 * 179.97438 * 22 21 18 24 24 C 1.38240 * 119.99598 * 359.97369 * 23 22 21 25 25 C 1.38235 * 119.99960 * 0.03003 * 24 23 22 26 26 C 1.38234 * 120.00132 * 359.97279 * 25 24 23 27 27 H 1.08999 * 109.47488 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46597 * 300.00125 * 1 2 3 29 29 H 1.09001 * 109.47501 * 59.99741 * 1 2 3 30 30 H 1.09008 * 109.46597 * 239.99875 * 2 1 3 31 31 H 1.09002 * 109.47259 * 120.00749 * 2 1 3 32 32 H 1.09001 * 109.47047 * 67.02993 * 6 4 3 33 33 H 1.09006 * 109.46812 * 307.03387 * 6 4 3 34 34 H 1.08993 * 109.47604 * 278.43033 * 8 7 6 35 35 H 1.09002 * 109.46546 * 38.43103 * 8 7 6 36 36 H 1.09002 * 109.46825 * 304.89391 * 9 8 7 37 37 H 1.08999 * 109.47153 * 64.89911 * 9 8 7 38 38 H 0.96994 * 119.99795 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.46965 * 297.23615 * 20 18 7 40 40 H 1.09005 * 109.47124 * 57.22977 * 20 18 7 41 41 H 1.08993 * 109.47041 * 177.23110 * 20 18 7 42 42 H 1.08009 * 119.99880 * 359.97438 * 22 21 18 43 43 H 1.07993 * 120.00323 * 179.70191 * 23 22 21 44 44 H 1.07997 * 119.99946 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00000 * 180.02562 * 25 24 23 46 46 H 1.08000 * 119.99869 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3408 1.5461 -0.0999 5 8 4.0656 0.5958 -0.2778 6 6 3.9266 2.9302 0.0099 7 7 5.3620 2.8804 -0.2981 8 6 6.0902 3.9396 0.4131 9 6 7.5684 3.5594 0.5193 10 6 8.2926 4.5858 1.3518 11 1 7.7525 5.4256 1.7637 12 6 9.6446 4.4535 1.5869 13 7 10.3024 3.4311 1.0849 14 14 10.5424 5.7262 2.6183 15 1 10.5067 5.3205 4.0464 16 1 11.9536 5.8234 2.1664 17 1 9.8804 7.0462 2.4620 18 6 5.5930 2.9641 -1.7464 19 1 5.4826 3.9981 -2.0728 20 6 4.5739 2.0872 -2.4769 21 6 6.9863 2.4839 -2.0616 22 6 7.7846 3.2021 -2.9319 23 6 9.0628 2.7620 -3.2206 24 6 9.5428 1.6037 -2.6384 25 6 8.7444 0.8853 -1.7681 26 6 7.4662 1.3255 -1.4795 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 3.7853 3.3052 1.0235 33 1 3.4264 3.5934 -0.6959 34 1 5.9946 4.8770 -0.1346 35 1 5.6730 4.0588 1.4131 36 1 7.6589 2.5804 0.9899 37 1 8.0073 3.5252 -0.4779 38 1 11.2535 3.3379 1.2506 39 1 4.7167 1.0461 -2.1874 40 1 3.5653 2.4033 -2.2104 41 1 4.7136 2.1875 -3.5532 42 1 7.4097 4.1073 -3.3865 43 1 9.6847 3.3205 -3.9043 44 1 10.5413 1.2595 -2.8643 45 1 9.1196 -0.0193 -1.3130 46 1 6.8427 0.7645 -0.7992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119083024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:53 Heat of formation + Delta-G solvation = -67.084366 kcal Electronic energy + Delta-G solvation = -26148.312671 eV Core-core repulsion = 22616.710095 eV Total energy + Delta-G solvation = -3531.602576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69110 -40.44451 -38.48048 -37.24498 -35.21083 -33.39254 -32.73230 -31.94861 -31.56026 -29.61498 -28.57008 -25.81167 -24.55153 -23.63474 -23.36424 -22.30071 -21.91407 -20.68701 -18.61738 -18.44608 -17.99502 -17.59562 -17.28164 -16.46858 -16.41555 -16.06628 -15.94726 -15.42554 -14.96884 -14.74758 -14.40122 -14.11920 -14.06251 -13.93154 -13.64042 -13.50712 -13.36742 -13.22167 -12.96585 -12.92599 -12.74435 -12.64524 -12.44191 -12.37096 -12.25394 -11.80826 -11.67820 -11.54236 -11.51147 -11.34319 -11.14196 -11.07696 -10.42689 -9.54777 -9.26375 -9.18610 -8.05385 -6.15478 0.67483 0.77287 1.31915 1.41910 1.42262 1.52335 1.65205 2.46038 2.94687 3.19672 3.26544 3.78371 3.91162 4.04347 4.09879 4.14693 4.15808 4.21226 4.30859 4.31540 4.38676 4.40732 4.46199 4.57995 4.65212 4.74479 4.80283 4.87403 4.89506 4.95842 4.96520 5.17354 5.22931 5.29057 5.31323 5.36857 5.57211 5.61197 5.71645 5.75108 5.84160 5.94573 5.95063 6.22011 6.22617 6.36633 6.43330 6.95515 7.02680 7.50702 9.03728 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.004540 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.014105 B = 6166.110235 C = 7413.880337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.364 6.364 4 C 0.463 3.537 5 O -0.514 6.514 6 C 0.060 3.940 7 N -0.536 5.536 8 C 0.079 3.921 9 C 0.036 3.964 10 C -0.544 4.544 11 H 0.055 0.945 12 C 0.010 3.990 13 N -0.914 5.914 14 Si 0.952 3.048 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.128 3.872 19 H 0.060 0.940 20 C -0.147 4.147 21 C -0.066 4.066 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.133 4.133 26 C -0.086 4.086 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.035 0.965 35 H 0.065 0.935 36 H -0.020 1.020 37 H 0.027 0.973 38 H 0.257 0.743 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 -3.079 -7.588 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.282 6.282 4 C 0.305 3.695 5 O -0.401 6.401 6 C -0.069 4.069 7 N -0.261 5.261 8 C -0.047 4.047 9 C -0.001 4.001 10 C -0.583 4.583 11 H 0.073 0.927 12 C -0.189 4.189 13 N -0.554 5.554 14 Si 0.778 3.222 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.189 1.189 18 C 0.021 3.979 19 H 0.077 0.923 20 C -0.204 4.204 21 C -0.067 4.067 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.151 4.151 26 C -0.104 4.104 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.053 0.947 35 H 0.084 0.916 36 H -0.002 1.002 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.144 0.856 45 H 0.131 0.869 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.309 -3.922 -7.505 18.377 hybrid contribution 0.897 0.816 0.664 1.382 sum -15.413 -3.106 -6.841 17.146 Atomic orbital electron populations 1.21805 0.90304 1.04215 1.03746 1.23215 0.97050 0.79534 1.02171 1.86485 1.24246 1.33383 1.84058 1.23912 0.80358 0.92924 0.72278 1.90638 1.61294 1.44027 1.44144 1.21703 0.89052 0.90347 1.05750 1.61441 1.07022 1.49565 1.08095 1.22178 0.95667 0.90260 0.96630 1.19109 0.90216 0.93984 0.96788 1.21642 0.94301 1.09755 1.32568 0.92724 1.25762 0.98593 0.97400 0.97153 1.70151 1.08595 1.30812 1.45838 0.85657 0.77717 0.79940 0.78916 1.20406 1.21194 1.18887 1.20612 0.92343 0.98147 0.86814 0.92261 1.22224 0.97105 1.00534 1.00523 1.19621 0.95732 0.94791 0.96552 1.21126 0.94629 0.99715 0.99240 1.21210 0.95989 0.96613 1.00903 1.21187 0.99507 0.96077 0.97699 1.21179 0.94803 1.00628 0.98477 1.20815 0.95470 0.96562 0.97569 0.88451 0.91174 0.91181 0.91791 0.91833 0.85730 0.87737 0.94692 0.91608 1.00208 0.95503 0.93424 0.92044 0.91666 0.90797 0.85041 0.84706 0.85556 0.86908 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 10.29 71.98 0.74 -1.03 16 2 C 0.05 1.05 6.28 71.98 0.45 1.51 16 3 O -0.36 -8.66 10.22 -51.40 -0.53 -9.19 16 4 C 0.46 13.21 5.84 71.23 0.42 13.62 16 5 O -0.51 -18.25 13.72 21.96 0.30 -17.94 16 6 C 0.06 1.60 5.23 85.56 0.45 2.05 16 7 N -0.54 -18.83 3.31 -879.92 -2.91 -21.74 16 8 C 0.08 3.21 4.94 86.30 0.43 3.64 16 9 C 0.04 1.91 3.76 29.85 0.11 2.03 16 10 C -0.54 -30.88 9.11 25.60 0.23 -30.64 16 11 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 12 C 0.01 0.56 5.46 84.65 0.46 1.03 16 13 N -0.91 -55.70 13.29 21.45 0.28 -55.42 16 14 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 18 C 0.13 4.19 2.23 44.17 0.10 4.29 16 19 H 0.06 1.79 7.56 -2.39 -0.02 1.77 16 20 C -0.15 -4.06 7.65 71.98 0.55 -3.51 16 21 C -0.07 -2.53 2.59 -19.87 -0.05 -2.58 16 22 C -0.13 -4.63 9.01 22.27 0.20 -4.43 16 23 C -0.13 -4.64 10.05 22.27 0.22 -4.42 16 24 C -0.13 -4.82 10.05 22.27 0.22 -4.60 16 25 C -0.13 -5.47 10.05 22.27 0.22 -5.25 16 26 C -0.09 -3.62 7.56 22.27 0.17 -3.45 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.06 1.31 7.97 -2.38 -0.02 1.29 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.12 2.97 7.40 -2.39 -0.02 2.95 16 33 H 0.10 2.17 7.03 -2.38 -0.02 2.15 16 34 H 0.03 1.35 7.72 -2.39 -0.02 1.33 16 35 H 0.07 2.56 7.47 -2.39 -0.02 2.54 16 36 H -0.02 -1.25 7.95 -2.39 -0.02 -1.27 16 37 H 0.03 1.47 4.77 -2.39 -0.01 1.46 16 38 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.06 2.01 5.97 -2.39 -0.01 2.00 16 40 H 0.06 1.55 5.44 -2.38 -0.01 1.53 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.13 4.00 8.00 -2.91 -0.02 3.98 16 43 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 44 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 45 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 46 H 0.11 4.79 7.88 -2.91 -0.02 4.76 16 Total: -1.00 -70.55 367.59 5.05 -65.49 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.95 Total: 23.77 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.93 Total: -31.77 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -2.62 Total: -77.16 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.22 Total: -27.13 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -70.55 5.05 -65.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119083024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.592 kcal (2) G-P(sol) polarization free energy of solvation -70.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds